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***  TLR_3_simulation  ***

<R2> analysis for 2608260325273940753

---  normal mode 58  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.1476
THR 260.0101
LYS 270.0083
CYS 280.0057
THR 290.0050
VAL 300.0050
SER 310.0057
HIS 320.0073
GLU 330.0049
VAL 340.0036
ALA 350.0017
ASP 360.0030
CYS 370.0047
SER 380.0063
HIS 390.0086
LEU 400.0088
LYS 410.0084
LEU 420.0071
THR 430.0065
GLN 440.0054
VAL 450.0044
PRO 460.0043
ASP 470.0041
ASP 480.0047
LEU 490.0037
PRO 500.0037
THR 510.0031
ASN 520.0036
ILE 530.0026
THR 540.0035
VAL 550.0035
LEU 560.0032
ASN 570.0045
LEU 580.0053
THR 590.0069
HIS 600.0084
ASN 610.0072
GLN 620.0072
LEU 630.0053
ARG 640.0049
ARG 650.0032
LEU 660.0032
PRO 670.0027
ALA 680.0022
ALA 690.0028
ASN 700.0030
PHE 710.0023
THR 720.0026
ARG 730.0029
TYR 740.0023
SER 750.0026
GLN 760.0032
LEU 770.0031
THR 780.0039
SER 790.0043
LEU 800.0043
ASP 810.0051
VAL 820.0051
GLY 830.0062
PHE 840.0070
ASN 850.0064
THR 860.0054
ILE 870.0042
SER 880.0037
LYS 890.0027
LEU 900.0025
GLU 910.0019
PRO 920.0020
GLU 930.0019
LEU 940.0018
CYS 950.0023
GLN 960.0025
LYS 970.0021
LEU 980.0022
PRO 990.0030
MET 1000.0033
LEU 1010.0044
LYS 1020.0055
VAL 1030.0058
LEU 1040.0050
ASN 1050.0056
LEU 1060.0049
GLN 1070.0059
HIS 1080.0061
ASN 1090.0052
GLU 1100.0047
LEU 1110.0034
SER 1120.0028
GLN 1130.0017
LEU 1140.0017
SER 1150.0016
ASP 1160.0022
LYS 1170.0020
THR 1180.0020
PHE 1190.0030
ALA 1200.0032
PHE 1210.0032
CYS 1220.0038
THR 1230.0049
ASN 1240.0055
LEU 1250.0055
THR 1260.0071
GLU 1270.0068
LEU 1280.0057
HIS 1290.0058
LEU 1300.0049
MET 1310.0054
SER 1320.0053
ASN 1330.0043
SER 1340.0039
ILE 1350.0025
GLN 1360.0022
LYS 1370.0014
ILE 1380.0010
LYS 1390.0020
ASN 1400.0029
ASN 1410.0031
PRO 1420.0025
PHE 1430.0035
VAL 1440.0046
LYS 1450.0050
GLN 1460.0056
LYS 1470.0070
ASN 1480.0077
LEU 1490.0067
ILE 1500.0074
THR 1510.0068
LEU 1520.0054
ASP 1530.0052
LEU 1540.0039
SER 1550.0048
HIS 1560.0051
ASN 1570.0040
GLY 1580.0038
LEU 1590.0021
SER 1600.0028
SER 1610.0024
THR 1620.0014
LYS 1630.0023
LEU 1640.0022
GLY 1650.0037
THR 1660.0053
GLN 1670.0062
VAL 1680.0065
GLN 1690.0059
LEU 1700.0058
GLU 1710.0074
ASN 1720.0080
LEU 1730.0064
GLN 1740.0068
GLU 1750.0059
LEU 1760.0041
LEU 1770.0040
LEU 1780.0028
SER 1790.0042
ASN 1800.0052
ASN 1810.0044
LYS 1820.0049
ILE 1830.0037
GLN 1840.0051
ALA 1850.0046
LEU 1860.0039
LYS 1870.0046
SER 1880.0049
GLU 1890.0055
GLU 1900.0039
LEU 1910.0033
ASP 1920.0051
ILE 1930.0050
PHE 1940.0048
ALA 1950.0061
ASN 1960.0072
SER 1970.0060
SER 1980.0059
LEU 1990.0047
LYS 2000.0055
LYS 2010.0040
LEU 2020.0024
GLU 2030.0032
LEU 2040.0029
SER 2050.0048
SER 2060.0059
ASN 2070.0051
GLN 2080.0062
ILE 2090.0053
LYS 2100.0067
GLU 2110.0063
PHE 2120.0051
SER 2130.0058
PRO 2140.0060
GLY 2150.0051
CYS 2160.0040
PHE 2170.0029
HIS 2180.0040
ALA 2190.0045
ILE 2200.0038
GLY 2210.0049
ARG 2220.0039
LEU 2230.0025
PHE 2240.0030
GLY 2250.0032
LEU 2260.0024
PHE 2270.0035
LEU 2280.0042
ASN 2290.0054
ASN 2300.0064
VAL 2310.0059
GLN 2320.0065
LEU 2330.0060
GLY 2340.0062
PRO 2350.0058
SER 2360.0066
LEU 2370.0060
THR 2380.0053
GLU 2390.0053
LYS 2400.0053
LEU 2410.0046
CYS 2420.0042
LEU 2430.0044
GLU 2440.0040
LEU 2450.0031
ALA 2460.0032
ASN 2470.0027
THR 2480.0022
SER 2490.0019
ILE 2500.0021
ARG 2510.0030
ASN 2520.0034
LEU 2530.0037
SER 2540.0044
LEU 2550.0050
SER 2560.0051
ASN 2570.0055
SER 2580.0054
GLN 2590.0056
LEU 2600.0053
SER 2610.0043
THR 2620.0043
THR 2630.0044
SER 2640.0044
ASN 2650.0045
THR 2660.0050
THR 2670.0050
PHE 2680.0046
LEU 2690.0045
GLY 2700.0044
LEU 2710.0040
LYS 2720.0040
TRP 2730.0034
THR 2740.0034
ASN 2750.0035
LEU 2760.0044
THR 2770.0045
MET 2780.0045
LEU 2790.0046
ASP 2800.0046
LEU 2810.0045
SER 2820.0043
TYR 2830.0042
ASN 2840.0039
ASN 2850.0034
LEU 2860.0033
ASN 2870.0028
VAL 2880.0029
VAL 2890.0035
GLY 2900.0037
ASN 2910.0040
ASP 2920.0044
SER 2930.0044
PHE 2940.0047
ALA 2950.0049
TRP 2960.0049
LEU 2970.0049
PRO 2980.0050
GLN 2990.0049
LEU 3000.0049
GLU 3010.0050
TYR 3020.0047
PHE 3030.0044
PHE 3040.0041
LEU 3050.0037
GLU 3060.0034
TYR 3070.0032
ASN 3080.0028
ASN 3090.0024
ILE 3100.0023
GLN 3110.0023
HIS 3120.0023
LEU 3130.0026
PHE 3140.0029
SER 3150.0033
HIS 3160.0038
SER 3170.0037
LEU 3180.0040
HIS 3190.0043
GLY 3200.0048
LEU 3210.0046
PHE 3220.0048
ASN 3230.0050
VAL 3240.0047
ARG 3250.0048
TYR 3260.0044
LEU 3270.0037
ASN 3280.0034
LEU 3290.0027
LYS 3300.0027
ARG 3310.0028
SER 3320.0025
PHE 3330.0020
THR 3340.0021
LYS 3350.0025
GLN 3360.0029
SER 3370.0045
ILE 3380.0044
SER 3390.0061
LEU 3400.0063
ALA 3410.0044
SER 3420.0037
LEU 3430.0026
PRO 3440.0018
LYS 3450.0024
ILE 3460.0020
ASP 3470.0022
ASP 3480.0023
PHE 3490.0028
SER 3500.0029
PHE 3510.0031
GLN 3520.0035
TRP 3530.0039
LEU 3540.0039
LYS 3550.0042
CYS 3560.0041
LEU 3570.0037
GLU 3580.0037
HIS 3590.0036
LEU 3600.0030
ASN 3610.0026
MET 3620.0023
GLU 3630.0021
ASP 3640.0018
ASN 3650.0015
ASP 3660.0017
ILE 3670.0019
PRO 3680.0022
GLY 3690.0023
ILE 3700.0024
LYS 3710.0019
SER 3720.0022
ASN 3730.0022
MET 3740.0022
PHE 3750.0025
THR 3760.0025
GLY 3770.0027
LEU 3780.0029
ILE 3790.0029
ASN 3800.0032
LEU 3810.0024
LYS 3820.0026
TYR 3830.0024
LEU 3840.0020
SER 3850.0019
LEU 3860.0017
SER 3870.0017
ASN 3880.0019
SER 3890.0017
PHE 3900.0022
THR 3910.0033
SER 3920.0042
LEU 3930.0042
ARG 3940.0054
THR 3950.0058
LEU 3960.0048
THR 3970.0056
ASN 3980.0058
GLU 3990.0052
THR 4000.0042
PHE 4010.0031
VAL 4020.0035
SER 4030.0028
LEU 4040.0027
ALA 4050.0035
HIS 4060.0027
SER 4070.0022
PRO 4080.0023
LEU 4090.0018
HIS 4100.0017
ILE 4110.0012
LEU 4120.0013
ASN 4130.0014
LEU 4140.0022
THR 4150.0026
LYS 4160.0038
ASN 4170.0038
LYS 4180.0050
ILE 4190.0050
SER 4200.0061
LYS 4210.0061
ILE 4220.0052
GLU 4230.0061
SER 4240.0060
ASP 4250.0056
ALA 4260.0045
PHE 4270.0035
SER 4280.0044
TRP 4290.0040
LEU 4300.0031
GLY 4310.0033
HIS 4320.0028
LEU 4330.0016
GLU 4340.0014
VAL 4350.0007
LEU 4360.0006
ASP 4370.0018
LEU 4380.0028
GLY 4390.0038
LEU 4400.0049
ASN 4410.0054
GLU 4420.0065
ILE 4430.0060
GLY 4440.0071
GLN 4450.0069
GLU 4460.0066
LEU 4470.0052
THR 4480.0058
GLY 4490.0046
GLN 4500.0054
GLU 4510.0045
TRP 4520.0034
ARG 4530.0044
GLY 4540.0043
LEU 4550.0029
GLU 4560.0032
ASN 4570.0028
ILE 4580.0014
PHE 4590.0020
GLU 4600.0020
ILE 4610.0016
TYR 4620.0031
LEU 4630.0038
SER 4640.0052
TYR 4650.0065
ASN 4660.0062
LYS 4670.0077
TYR 4680.0074
LEU 4690.0060
GLN 4700.0061
LEU 4710.0046
THR 4720.0047
ARG 4730.0040
ASN 4740.0041
SER 4750.0035
PHE 4760.0022
ALA 4770.0029
LEU 4780.0033
VAL 4790.0022
PRO 4800.0025
SER 4810.0028
LEU 4820.0020
GLN 4830.0031
ARG 4840.0033
LEU 4850.0030
MET 4860.0043
LEU 4870.0047
ARG 4880.0061
ARG 4890.0072
VAL 4900.0065
ALA 4910.0073
LEU 4920.0058
LYS 4930.0062
ASN 4940.0055
VAL 4950.0045
ASP 4960.0041
SER 4970.0037
SER 4980.0034
PRO 4990.0027
SER 5000.0026
PRO 5010.0026
PHE 5020.0023
GLN 5030.0019
PRO 5040.0020
LEU 5050.0022
ARG 5060.0028
ASN 5070.0034
LEU 5080.0036
THR 5090.0045
ILE 5100.0048
LEU 5110.0045
ASP 5120.0053
LEU 5130.0054
SER 5140.0064
ASN 5150.0072
ASN 5160.0066
ASN 5170.0063
ILE 5180.0058
ALA 5190.0054
ASN 5200.0052
ILE 5210.0047
ASN 5220.0042
ASP 5230.0040
ASP 5240.0036
MET 5250.0038
LEU 5260.0038
GLU 5270.0033
GLY 5280.0031
LEU 5290.0036
GLU 5300.0037
LYS 5310.0044
LEU 5320.0046
GLU 5330.0053
ILE 5340.0056
LEU 5350.0055
ASP 5360.0058
LEU 5370.0058
GLN 5380.0063
HIS 5390.0065
ASN 5400.0062
ASN 5410.0056
LEU 5420.0055
ALA 5430.0054
ARG 5440.0054
LEU 5450.0054
TRP 5460.0055
LYS 5470.0055
HIS 5480.0056
ALA 5490.0057
ASN 5500.0058
PRO 5510.0058
GLY 5520.0062
GLY 5530.0057
PRO 5540.0053
ILE 5550.0055
TYR 5560.0051
PHE 5570.0051
LEU 5580.0052
LYS 5590.0051
GLY 5600.0051
LEU 5610.0048
SER 5620.0046
HIS 5630.0050
LEU 5640.0053
HIS 5650.0056
ILE 5660.0060
LEU 5670.0060
ASN 5680.0061
LEU 5690.0060
GLU 5700.0062
SER 5710.0058
ASN 5720.0060
GLY 5730.0058
PHE 5740.0057
ASP 5750.0055
GLU 5760.0053
ILE 5770.0054
PRO 5780.0055
VAL 5790.0054
GLU 5800.0055
VAL 5810.0049
PHE 5820.0049
LYS 5830.0049
ASP 5840.0049
LEU 5850.0049
PHE 5860.0029
GLU 5870.0037
LEU 5880.0045
LYS 5890.0051
ILE 5900.0060
ILE 5910.0057
ASP 5920.0056
LEU 5930.0057
GLY 5940.0054
LEU 5950.0054
ASN 5960.0055
ASN 5970.0057
LEU 5980.0057
ASN 5990.0055
THR 6000.0061
LEU 6010.0053
PRO 6020.0056
ALA 6030.0058
SER 6040.0059
VAL 6050.0057
PHE 6060.0046
ASN 6070.0046
ASN 6080.0047
GLN 6090.0046
VAL 6100.0046
SER 6110.0047
LEU 6120.0050
LYS 6130.0052
SER 6140.0054
LEU 6150.0055
ASN 6160.0051
LEU 6170.0050
GLN 6180.0042
LYS 6190.0042
ASN 6200.0050
LEU 6210.0055
ILE 6220.0057
THR 6230.0061
SER 6240.0068
VAL 6250.0063
GLU 6260.0059
LYS 6270.0066
LYS 6280.0075
VAL 6290.0068
PHE 6300.0061
GLY 6310.0060
PRO 6320.0063
ALA 6330.0060
PHE 6340.0058
ARG 6350.0062
ASN 6360.0063
LEU 6370.0059
THR 6380.0058
GLU 6390.0054
LEU 6400.0051
ASP 6410.0044
MET 6420.0041
ARG 6430.0032
PHE 6440.0034
ASN 6450.0043
PRO 6460.0057
PHE 6470.0056
ASP 6480.0073
CYS 6490.0068
THR 6500.0081
CYS 6510.0073
GLU 6520.0088
SER 6530.0076
ILE 6540.0056
ALA 6550.0056
TRP 6560.0055
PHE 6570.0048
VAL 6580.0041
ASN 6590.0050
TRP 6600.0055
ILE 6610.0048
ASN 6620.0053
GLU 6630.0063
THR 6640.0064
HIS 6650.0072
THR 6660.0066
ASN 6670.0061
ILE 6680.0048
PRO 6690.0046
GLU 6700.0036
LEU 6710.0036
SER 6720.0042
SER 6730.0044
HIS 6740.0034
TYR 6750.0033
LEU 6760.0049
CYS 6770.0064
ASN 6780.0083
THR 6790.0101
PRO 6800.0112
PRO 6810.0131
HIS 6820.0123
TYR 6830.0095
HIS 6840.0102
GLY 6850.0089
PHE 6860.0075
PRO 6870.0053
VAL 6880.0041
ARG 6890.0035
LEU 6900.0048
PHE 6910.0042
ASP 6920.0044
THR 6930.0050
SER 6940.0054
SER 6950.0074
CYS 6960.0087
GLU 10.0115
ALA 20.0113
ALA 30.0092
ALA 40.0075
LYS 50.0078
MET 60.0073
GLN 70.0060
ARG 80.0048
LEU 90.0056
VAL 100.0061
LEU 110.0046
LEU 120.0044
LEU 130.0055
ALA 140.0055
ILE 150.0048
SER 160.0056
LEU 170.0040
LEU 180.0046
LEU 190.0052
TYR 200.0043
GLN 210.0024
ASP 220.0047
LEU 230.0101
PRO 240.0116
VAL 250.0128
ARG 260.0204
SER 270.0153
GLU 280.0165
PHE 290.0139
GLU 300.0101
LEU 310.0096
ASP 320.0098
ARG 330.0047
ILE 340.0056
CYS 350.0097
GLY 360.0193
TYR 370.0254
GLY 380.0176
THR 390.0206
ALA 400.0109
ARG 410.0051
CYS 420.0030
ARG 430.0050
LYS 440.0065
LYS 450.0073
CYS 460.0089
ARG 470.0113
SER 480.0137
GLN 490.0137
GLU 500.0111
TYR 510.0100
ARG 520.0064
ILE 530.0082
GLY 540.0065
ARG 550.0054
CYS 560.0065
PRO 570.0104
ASN 580.0100
THR 590.0074
TYR 600.0048
ALA 610.0030
CYS 620.0044
CYS 630.0063
LEU 640.0094
ARG 650.0121
LYS 660.0173
TRP 670.0164
ASP 680.0072
GLU 690.0061
SER 700.0048
LEU 710.0096
LEU 720.0210
ASN 730.0219
ARG 740.0157
THR 750.0260
LYS 760.0327
PRO 770.0247
GLU 780.0222
ALA 790.0212
ALA 800.0228
ALA 810.0116
LYS 820.0113
LYS 830.0113
GLU 840.0115
MET 850.0115
ASN 860.0113
LEU 870.0106
SER 880.0088
VAL 890.0074
GLY 900.0064
LEU 910.0045
GLY 920.0056
GLY 930.0077
GLY 940.0080
SER 950.0050
ASN 960.0059
LEU 970.0064
SER 980.0081
VAL 990.0098
GLY 1000.0114
LEU 1010.0126
GLY 1020.0133
GLU 1030.0095
ILE 1040.0209
GLY 1050.0285
GLY 1060.0426
GLY 1070.0314
SER 1080.0235
LYS 1090.0086
LEU 1100.0075
LEU 1110.0100
ASP 1120.0097
ILE 1130.0091
ASN 1140.0093
LEU 1150.0095
GLY 1160.0104
ARG 1170.0194
GLY 1180.0173
GLY 1190.0160
GLY 1200.0090
SER 1210.0043
MET 1220.0057
VAL 1230.0074
ASP 1240.0094
LEU 1250.0116
THR 1260.0148
PHE 1270.0164
GLY 1280.0179
GLY 1290.0193
VAL 1300.0207
GLY 1310.0157
GLY 1320.0148
GLY 1330.0121
SER 1340.0134
THR 1350.0112
PHE 1360.0156
THR 1370.0138
PHE 1380.0120
PHE 1390.0114
PRO 1400.0095
LEU 1410.0147
VAL 1420.0161
ILE 1430.0221
GLY 1440.0295
GLY 1450.0355
GLY 1460.0317
SER 1470.0243
ASP 1480.0152
ALA 1490.0149
MET 1500.0108
TYR 1510.0125
LEU 1520.0107
GLY 1530.0152
PHE 1540.0161
ALA 1550.0192
ALA 1560.0169
GLY 1570.0132
GLY 1580.0106
GLY 1590.0063
SER 1600.0060
ALA 1610.0080
GLY 1620.0105
GLY 1630.0128
GLU 1640.0157
ASN 1650.0151
HIS 1660.0129
VAL 1670.0112
ALA 1680.0090
PHE 1690.0071
GLY 1700.0053
PRO 1710.0163
GLY 1720.0178
PRO 1730.0178
GLY 1740.0139
VAL 1750.0095
ASP 1760.0090
LEU 1770.0109
THR 1780.0120
PHE 1790.0139
GLY 1800.0152
GLY 1810.0157
VAL 1820.0157
GLN 1830.0131
PHE 1840.0131
ALA 1850.0110
MET 1860.0094
VAL 1870.0122
ASN 1880.0160
ASN 1890.0190
GLY 1900.0235
PRO 1910.0267
GLY 1920.0213
PRO 1930.0143
GLY 1940.0083
GLU 1950.0116
SER 1960.0144
PHE 1970.0120
THR 1980.0047
ALA 1990.0079
GLN 2000.0055
PRO 2010.0031
ALA 2020.0107
ASP 2030.0146
MET 2040.0091
GLN 2050.0048
ALA 2060.0036
GLY 2070.0067
ILE 2080.0101
LYS 2090.0127
GLY 2100.0197
PRO 2110.0152
GLY 2120.0087
PRO 2130.0025
GLY 2140.0107
GLY 2150.0169
SER 2160.0377
ILE 2170.0229
GLN 2180.0221
VAL 2190.0186
ILE 2200.0107
ASN 2210.0135
GLY 2220.0111
SER 2230.0104
THR 2240.0116
ILE 2250.0095
GLY 2260.0112
THR 2270.0167
GLY 2280.0151
SER 2290.0140
LYS 2300.0085
LYS 2310.0026
THR 2320.0097
ILE 2330.0139
LEU 2340.0196
ILE 2350.0262
TYR 2360.0204
SER 2370.0143
ILE 2380.0118
ILE 2390.0101
GLY 2400.0176
VAL 2410.0247
LYS 2420.0284
LYS 2430.0240
GLY 2440.0135
THR 2450.0205
LEU 2460.0135
ALA 2470.0179
TRP 2480.0195
ALA 2490.0218
ARG 2500.0240
THR 2510.0256
GLY 2520.0186
PHE 2530.0153
SER 2540.0138
PRO 2550.0137
ALA 2560.0206
LYS 2570.0187
LYS 2580.0032
LEU 2590.0149
ASN 2600.0237
ALA 2610.0318
GLY 2620.0230
VAL 2630.0246
VAL 2640.0190
ARG 2650.0151
VAL 2660.0167
PHE 2670.0116
PHE 2680.0189
LEU 2690.0278
ASN 2700.0370
GLN 2710.0382
LYS 2720.0396
LYS 2730.0356
ALA 2740.0292
LYS 2750.0267
ASP 2760.0213
VAL 2770.0248
LEU 2780.0185
ARG 2790.0099
LYS 2800.0169
THR 2810.0270
SER 2820.0197
ARG 2830.0191
PRO 2840.0223
MET 2850.0152
VAL 2860.0652
ASP 2870.0564
LEU 2880.0152
THR 2890.0725
PHE 2900.0593
GLY 2910.0389
GLY 2920.1476

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.