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***  TLR_3_simulation  ***

<R2> analysis for 2608260325273940753

---  normal mode 59  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0934
THR 260.0175
LYS 270.0155
CYS 280.0124
THR 290.0131
VAL 300.0133
SER 310.0146
HIS 320.0150
GLU 330.0100
VAL 340.0092
ALA 350.0065
ASP 360.0072
CYS 370.0075
SER 380.0069
HIS 390.0094
LEU 400.0109
LYS 410.0102
LEU 420.0078
THR 430.0087
GLN 440.0066
VAL 450.0045
PRO 460.0042
ASP 470.0042
ASP 480.0029
LEU 490.0030
PRO 500.0051
THR 510.0055
ASN 520.0081
ILE 530.0070
THR 540.0093
VAL 550.0077
LEU 560.0034
ASN 570.0035
LEU 580.0034
THR 590.0043
HIS 600.0063
ASN 610.0077
GLN 620.0091
LEU 630.0073
ARG 640.0099
ARG 650.0093
LEU 660.0085
PRO 670.0113
ALA 680.0126
ALA 690.0132
ASN 700.0096
PHE 710.0094
THR 720.0123
ARG 730.0099
TYR 740.0090
SER 750.0128
GLN 760.0125
LEU 770.0104
THR 780.0119
SER 790.0091
LEU 800.0060
ASP 810.0035
VAL 820.0023
GLY 830.0033
PHE 840.0055
ASN 850.0059
THR 860.0082
ILE 870.0069
SER 880.0089
LYS 890.0094
LEU 900.0084
GLU 910.0116
PRO 920.0130
GLU 930.0151
LEU 940.0122
CYS 950.0131
GLN 960.0169
LYS 970.0153
LEU 980.0136
PRO 990.0167
MET 1000.0160
LEU 1010.0120
LYS 1020.0121
VAL 1030.0094
LEU 1040.0066
ASN 1050.0043
LEU 1060.0021
GLN 1070.0031
HIS 1080.0046
ASN 1090.0044
GLU 1100.0057
LEU 1110.0027
SER 1120.0030
GLN 1130.0035
LEU 1140.0036
SER 1150.0055
ASP 1160.0076
LYS 1170.0096
THR 1180.0076
PHE 1190.0082
ALA 1200.0109
PHE 1210.0130
CYS 1220.0114
THR 1230.0137
ASN 1240.0137
LEU 1250.0110
THR 1260.0109
GLU 1270.0088
LEU 1280.0064
HIS 1290.0048
LEU 1300.0029
MET 1310.0042
SER 1320.0045
ASN 1330.0026
SER 1340.0036
ILE 1350.0026
GLN 1360.0042
LYS 1370.0040
ILE 1380.0043
LYS 1390.0040
ASN 1400.0048
ASN 1410.0058
PRO 1420.0055
PHE 1430.0074
VAL 1440.0092
LYS 1450.0104
GLN 1460.0088
LYS 1470.0107
ASN 1480.0111
LEU 1490.0094
ILE 1500.0101
THR 1510.0078
LEU 1520.0066
ASP 1530.0057
LEU 1540.0053
SER 1550.0060
HIS 1560.0065
ASN 1570.0060
GLY 1580.0069
LEU 1590.0077
SER 1600.0095
SER 1610.0098
THR 1620.0096
LYS 1630.0095
LEU 1640.0082
GLY 1650.0089
THR 1660.0094
GLN 1670.0101
VAL 1680.0108
GLN 1690.0097
LEU 1700.0091
GLU 1710.0101
ASN 1720.0095
LEU 1730.0081
GLN 1740.0084
GLU 1750.0070
LEU 1760.0068
LEU 1770.0062
LEU 1780.0071
SER 1790.0073
ASN 1800.0077
ASN 1810.0083
LYS 1820.0100
ILE 1830.0108
GLN 1840.0128
ALA 1850.0136
LEU 1860.0125
LYS 1870.0138
SER 1880.0141
GLU 1890.0144
GLU 1900.0124
LEU 1910.0114
ASP 1920.0125
ILE 1930.0110
PHE 1940.0106
ALA 1950.0125
ASN 1960.0114
SER 1970.0094
SER 1980.0083
LEU 1990.0069
LYS 2000.0054
LYS 2010.0050
LEU 2020.0060
GLU 2030.0057
LEU 2040.0072
SER 2050.0073
SER 2060.0087
ASN 2070.0098
GLN 2080.0118
ILE 2090.0120
LYS 2100.0140
GLU 2110.0141
PHE 2120.0127
SER 2130.0145
PRO 2140.0148
GLY 2150.0137
CYS 2160.0122
PHE 2170.0105
HIS 2180.0118
ALA 2190.0119
ILE 2200.0099
GLY 2210.0104
ARG 2220.0080
LEU 2230.0062
PHE 2240.0039
GLY 2250.0032
LEU 2260.0043
PHE 2270.0046
LEU 2280.0065
ASN 2290.0070
ASN 2300.0087
VAL 2310.0086
GLN 2320.0095
LEU 2330.0088
GLY 2340.0088
PRO 2350.0079
SER 2360.0107
LEU 2370.0096
THR 2380.0075
GLU 2390.0076
LYS 2400.0085
LEU 2410.0083
CYS 2420.0065
LEU 2430.0079
GLU 2440.0083
LEU 2450.0059
ALA 2460.0057
ASN 2470.0060
THR 2480.0057
SER 2490.0045
ILE 2500.0032
ARG 2510.0028
ASN 2520.0036
LEU 2530.0043
SER 2540.0053
LEU 2550.0064
SER 2560.0078
ASN 2570.0086
SER 2580.0084
GLN 2590.0089
LEU 2600.0081
SER 2610.0082
THR 2620.0079
THR 2630.0073
SER 2640.0070
ASN 2650.0064
THR 2660.0063
THR 2670.0062
PHE 2680.0054
LEU 2690.0050
GLY 2700.0042
LEU 2710.0042
LYS 2720.0040
TRP 2730.0034
THR 2740.0035
ASN 2750.0040
LEU 2760.0053
THR 2770.0061
MET 2780.0067
LEU 2790.0071
ASP 2800.0078
LEU 2810.0088
SER 2820.0094
TYR 2830.0102
ASN 2840.0099
ASN 2850.0096
LEU 2860.0114
ASN 2870.0104
VAL 2880.0096
VAL 2890.0086
GLY 2900.0084
ASN 2910.0073
ASP 2920.0077
SER 2930.0077
PHE 2940.0078
ALA 2950.0081
TRP 2960.0071
LEU 2970.0071
PRO 2980.0073
GLN 2990.0072
LEU 3000.0072
GLU 3010.0080
TYR 3020.0078
PHE 3030.0077
PHE 3040.0076
LEU 3050.0074
GLU 3060.0088
TYR 3070.0087
ASN 3080.0085
ASN 3090.0077
ILE 3100.0068
GLN 3110.0085
HIS 3120.0072
LEU 3130.0056
PHE 3140.0061
SER 3150.0049
HIS 3160.0071
SER 3170.0069
LEU 3180.0069
HIS 3190.0076
GLY 3200.0083
LEU 3210.0078
PHE 3220.0081
ASN 3230.0083
VAL 3240.0075
ARG 3250.0072
TYR 3260.0065
LEU 3270.0059
ASN 3280.0058
LEU 3290.0050
LYS 3300.0054
ARG 3310.0049
SER 3320.0059
PHE 3330.0038
THR 3340.0066
LYS 3350.0059
GLN 3360.0164
SER 3370.0265
ILE 3380.0364
SER 3390.0476
LEU 3400.0472
ALA 3410.0309
SER 3420.0241
LEU 3430.0156
PRO 3440.0066
LYS 3450.0051
ILE 3460.0030
ASP 3470.0040
ASP 3480.0032
PHE 3490.0036
SER 3500.0044
PHE 3510.0044
GLN 3520.0053
TRP 3530.0064
LEU 3540.0061
LYS 3550.0068
CYS 3560.0073
LEU 3570.0060
GLU 3580.0061
HIS 3590.0053
LEU 3600.0038
ASN 3610.0053
MET 3620.0035
GLU 3630.0046
ASP 3640.0041
ASN 3650.0025
ASP 3660.0063
ILE 3670.0051
PRO 3680.0070
GLY 3690.0064
ILE 3700.0048
LYS 3710.0023
SER 3720.0017
ASN 3730.0013
MET 3740.0011
PHE 3750.0021
THR 3760.0028
GLY 3770.0041
LEU 3780.0041
ILE 3790.0051
ASN 3800.0057
LEU 3810.0045
LYS 3820.0055
TYR 3830.0055
LEU 3840.0043
SER 3850.0051
LEU 3860.0061
SER 3870.0073
ASN 3880.0069
SER 3890.0054
PHE 3900.0058
THR 3910.0087
SER 3920.0076
LEU 3930.0062
ARG 3940.0057
THR 3950.0043
LEU 3960.0036
THR 3970.0028
ASN 3980.0017
GLU 3990.0017
THR 4000.0027
PHE 4010.0021
VAL 4020.0012
SER 4030.0012
LEU 4040.0021
ALA 4050.0019
HIS 4060.0028
SER 4070.0030
PRO 4080.0040
LEU 4090.0039
HIS 4100.0048
ILE 4110.0059
LEU 4120.0053
ASN 4130.0063
LEU 4140.0062
THR 4150.0077
LYS 4160.0082
ASN 4170.0074
LYS 4180.0077
ILE 4190.0065
SER 4200.0067
LYS 4210.0047
ILE 4220.0034
GLU 4230.0030
SER 4240.0022
ASP 4250.0012
ALA 4260.0017
PHE 4270.0016
SER 4280.0008
TRP 4290.0012
LEU 4300.0021
GLY 4310.0023
HIS 4320.0034
LEU 4330.0034
GLU 4340.0046
VAL 4350.0050
LEU 4360.0046
ASP 4370.0058
LEU 4380.0055
GLY 4390.0069
LEU 4400.0083
ASN 4410.0081
GLU 4420.0082
ILE 4430.0063
GLY 4440.0068
GLN 4450.0056
GLU 4460.0056
LEU 4470.0039
THR 4480.0047
GLY 4490.0035
GLN 4500.0034
GLU 4510.0017
TRP 4520.0008
ARG 4530.0018
GLY 4540.0022
LEU 4550.0020
GLU 4560.0036
ASN 4570.0043
ILE 4580.0035
PHE 4590.0048
GLU 4600.0043
ILE 4610.0031
TYR 4620.0042
LEU 4630.0039
SER 4640.0054
TYR 4650.0070
ASN 4660.0067
LYS 4670.0078
TYR 4680.0066
LEU 4690.0048
GLN 4700.0054
LEU 4710.0049
THR 4720.0063
ARG 4730.0072
ASN 4740.0064
SER 4750.0042
PHE 4760.0035
ALA 4770.0053
LEU 4780.0048
VAL 4790.0043
PRO 4800.0058
SER 4810.0061
LEU 4820.0046
GLN 4830.0055
ARG 4840.0043
LEU 4850.0023
MET 4860.0025
LEU 4870.0019
ARG 4880.0036
ARG 4890.0050
VAL 4900.0047
ALA 4910.0056
LEU 4920.0042
LYS 4930.0056
ASN 4940.0064
VAL 4950.0050
ASP 4960.0067
SER 4970.0078
SER 4980.0093
PRO 4990.0089
SER 5000.0069
PRO 5010.0054
PHE 5020.0049
GLN 5030.0068
PRO 5040.0072
LEU 5050.0062
ARG 5060.0079
ASN 5070.0077
LEU 5080.0059
THR 5090.0059
ILE 5100.0043
LEU 5110.0027
ASP 5120.0015
LEU 5130.0002
SER 5140.0013
ASN 5150.0029
ASN 5160.0028
ASN 5170.0035
ILE 5180.0035
ALA 5190.0046
ASN 5200.0050
ILE 5210.0048
ASN 5220.0060
ASP 5230.0061
ASP 5240.0068
MET 5250.0056
LEU 5260.0054
GLU 5270.0069
GLY 5280.0076
LEU 5290.0065
GLU 5300.0072
LYS 5310.0066
LEU 5320.0053
GLU 5330.0048
ILE 5340.0038
LEU 5350.0027
ASP 5360.0016
LEU 5370.0011
GLN 5380.0002
HIS 5390.0010
ASN 5400.0016
ASN 5410.0021
LEU 5420.0022
ALA 5430.0019
ARG 5440.0028
LEU 5450.0030
TRP 5460.0019
LYS 5470.0021
HIS 5480.0024
ALA 5490.0032
ASN 5500.0035
PRO 5510.0049
GLY 5520.0050
GLY 5530.0039
PRO 5540.0032
ILE 5550.0037
TYR 5560.0032
PHE 5570.0034
LEU 5580.0031
LYS 5590.0036
GLY 5600.0042
LEU 5610.0037
SER 5620.0038
HIS 5630.0043
LEU 5640.0035
HIS 5650.0037
ILE 5660.0029
LEU 5670.0022
ASN 5680.0019
LEU 5690.0012
GLU 5700.0009
SER 5710.0005
ASN 5720.0008
GLY 5730.0004
PHE 5740.0006
ASP 5750.0004
GLU 5760.0003
ILE 5770.0003
PRO 5780.0004
VAL 5790.0004
GLU 5800.0004
VAL 5810.0008
PHE 5820.0010
LYS 5830.0008
ASP 5840.0013
LEU 5850.0019
PHE 5860.0016
GLU 5870.0027
LEU 5880.0026
LYS 5890.0037
ILE 5900.0036
ILE 5910.0022
ASP 5920.0021
LEU 5930.0016
GLY 5940.0019
LEU 5950.0021
ASN 5960.0017
ASN 5970.0024
LEU 5980.0024
ASN 5990.0032
THR 6000.0040
LEU 6010.0029
PRO 6020.0039
ALA 6030.0051
SER 6040.0050
VAL 6050.0033
PHE 6060.0036
ASN 6070.0046
ASN 6080.0038
GLN 6090.0041
VAL 6100.0054
SER 6110.0056
LEU 6120.0053
LYS 6130.0062
SER 6140.0056
LEU 6150.0046
ASN 6160.0035
LEU 6170.0023
GLN 6180.0035
LYS 6190.0043
ASN 6200.0035
LEU 6210.0048
ILE 6220.0037
THR 6230.0051
SER 6240.0057
VAL 6250.0052
GLU 6260.0066
LYS 6270.0085
LYS 6280.0093
VAL 6290.0069
PHE 6300.0065
GLY 6310.0084
PRO 6320.0086
ALA 6330.0072
PHE 6340.0081
ARG 6350.0099
ASN 6360.0098
LEU 6370.0086
THR 6380.0093
GLU 6390.0079
LEU 6400.0063
ASP 6410.0055
MET 6420.0037
ARG 6430.0055
PHE 6440.0065
ASN 6450.0050
PRO 6460.0073
PHE 6470.0054
ASP 6480.0071
CYS 6490.0061
THR 6500.0077
CYS 6510.0078
GLU 6520.0102
SER 6530.0075
ILE 6540.0049
ALA 6550.0068
TRP 6560.0082
PHE 6570.0066
VAL 6580.0066
ASN 6590.0092
TRP 6600.0100
ILE 6610.0097
ASN 6620.0103
GLU 6630.0116
THR 6640.0123
HIS 6650.0138
THR 6660.0111
ASN 6670.0107
ILE 6680.0082
PRO 6690.0094
GLU 6700.0098
LEU 6710.0100
SER 6720.0116
SER 6730.0124
HIS 6740.0098
TYR 6750.0074
LEU 6760.0096
CYS 6770.0088
ASN 6780.0118
THR 6790.0125
PRO 6800.0133
PRO 6810.0172
HIS 6820.0150
TYR 6830.0118
HIS 6840.0150
GLY 6850.0154
PHE 6860.0119
PRO 6870.0100
VAL 6880.0063
ARG 6890.0081
LEU 6900.0088
PHE 6910.0055
ASP 6920.0048
THR 6930.0072
SER 6940.0089
SER 6950.0078
CYS 6960.0114
GLU 10.0934
ALA 20.0825
ALA 30.0659
ALA 40.0569
LYS 50.0533
MET 60.0402
GLN 70.0298
ARG 80.0237
LEU 90.0283
VAL 100.0200
LEU 110.0120
LEU 120.0143
LEU 130.0172
ALA 140.0108
ILE 150.0098
SER 160.0117
LEU 170.0158
LEU 180.0128
LEU 190.0132
TYR 200.0191
GLN 210.0240
ASP 220.0216
LEU 230.0292
PRO 240.0390
VAL 250.0421
ARG 260.0296
SER 270.0326
GLU 280.0199
PHE 290.0253
GLU 300.0326
LEU 310.0275
ASP 320.0178
ARG 330.0176
ILE 340.0189
CYS 350.0154
GLY 360.0192
TYR 370.0278
GLY 380.0203
THR 390.0082
ALA 400.0024
ARG 410.0063
CYS 420.0074
ARG 430.0112
LYS 440.0140
LYS 450.0162
CYS 460.0176
ARG 470.0222
SER 480.0271
GLN 490.0243
GLU 500.0189
TYR 510.0188
ARG 520.0140
ILE 530.0123
GLY 540.0081
ARG 550.0027
CYS 560.0058
PRO 570.0087
ASN 580.0084
THR 590.0053
TYR 600.0066
ALA 610.0076
CYS 620.0057
CYS 630.0100
LEU 640.0108
ARG 650.0155
LYS 660.0258
TRP 670.0246
ASP 680.0179
GLU 690.0188
SER 700.0202
LEU 710.0225
LEU 720.0308
ASN 730.0300
ARG 740.0287
THR 750.0370
LYS 760.0399
PRO 770.0351
GLU 780.0343
ALA 790.0322
ALA 800.0320
ALA 810.0075
LYS 820.0051
LYS 830.0038
GLU 840.0019
MET 850.0023
ASN 860.0019
LEU 870.0026
SER 880.0026
VAL 890.0034
GLY 900.0044
LEU 910.0047
GLY 920.0071
GLY 930.0076
GLY 940.0070
SER 950.0045
ASN 960.0029
LEU 970.0016
SER 980.0016
VAL 990.0027
GLY 1000.0035
LEU 1010.0035
GLY 1020.0037
GLU 1030.0045
ILE 1040.0062
GLY 1050.0078
GLY 1060.0070
GLY 1070.0050
SER 1080.0029
LYS 1090.0032
LEU 1100.0051
LEU 1110.0047
ASP 1120.0061
ILE 1130.0053
ASN 1140.0068
LEU 1150.0065
GLY 1160.0076
ARG 1170.0093
GLY 1180.0042
GLY 1190.0082
GLY 1200.0119
SER 1210.0065
MET 1220.0057
VAL 1230.0055
ASP 1240.0050
LEU 1250.0048
THR 1260.0049
PHE 1270.0047
GLY 1280.0041
GLY 1290.0042
VAL 1300.0039
GLY 1310.0022
GLY 1320.0025
GLY 1330.0030
SER 1340.0043
THR 1350.0051
PHE 1360.0062
THR 1370.0050
PHE 1380.0042
PHE 1390.0029
PRO 1400.0022
LEU 1410.0028
VAL 1420.0050
ILE 1430.0050
GLY 1440.0068
GLY 1450.0081
GLY 1460.0069
SER 1470.0067
ASP 1480.0077
ALA 1490.0059
MET 1500.0051
TYR 1510.0030
LEU 1520.0039
GLY 1530.0041
PHE 1540.0051
ALA 1550.0053
ALA 1560.0045
GLY 1570.0042
GLY 1580.0037
GLY 1590.0034
SER 1600.0033
ALA 1610.0054
GLY 1620.0050
GLY 1630.0049
GLU 1640.0051
ASN 1650.0057
HIS 1660.0046
VAL 1670.0042
ALA 1680.0041
PHE 1690.0042
GLY 1700.0047
PRO 1710.0084
GLY 1720.0120
PRO 1730.0133
GLY 1740.0095
VAL 1750.0048
ASP 1760.0066
LEU 1770.0065
THR 1780.0081
PHE 1790.0094
GLY 1800.0112
GLY 1810.0139
VAL 1820.0144
GLN 1830.0126
PHE 1840.0113
ALA 1850.0111
MET 1860.0080
VAL 1870.0078
ASN 1880.0104
ASN 1890.0108
GLY 1900.0191
PRO 1910.0212
GLY 1920.0201
PRO 1930.0148
GLY 1940.0067
GLU 1950.0068
SER 1960.0117
PHE 1970.0101
THR 1980.0057
ALA 1990.0071
GLN 2000.0020
PRO 2010.0044
ALA 2020.0107
ASP 2030.0126
MET 2040.0118
GLN 2050.0180
ALA 2060.0123
GLY 2070.0234
ILE 2080.0135
LYS 2090.0184
GLY 2100.0173
PRO 2110.0131
GLY 2120.0146
PRO 2130.0098
GLY 2140.0100
GLY 2150.0111
SER 2160.0243
ILE 2170.0180
GLN 2180.0081
VAL 2190.0130
ILE 2200.0109
ASN 2210.0078
GLY 2220.0060
SER 2230.0025
THR 2240.0027
ILE 2250.0026
GLY 2260.0054
THR 2270.0081
GLY 2280.0081
SER 2290.0077
LYS 2300.0049
LYS 2310.0012
THR 2320.0037
ILE 2330.0051
LEU 2340.0080
ILE 2350.0103
TYR 2360.0095
SER 2370.0064
ILE 2380.0039
ILE 2390.0013
GLY 2400.0048
VAL 2410.0115
LYS 2420.0122
LYS 2430.0145
GLY 2440.0095
THR 2450.0051
LEU 2460.0021
ALA 2470.0032
TRP 2480.0057
ALA 2490.0069
ARG 2500.0095
THR 2510.0099
GLY 2520.0077
PHE 2530.0058
SER 2540.0043
PRO 2550.0037
ALA 2560.0037
LYS 2570.0020
LYS 2580.0022
LEU 2590.0054
ASN 2600.0084
ALA 2610.0067
GLY 2620.0040
VAL 2630.0039
VAL 2640.0019
ARG 2650.0039
VAL 2660.0028
PHE 2670.0025
PHE 2680.0027
LEU 2690.0022
ASN 2700.0024
GLN 2710.0024
LYS 2720.0025
LYS 2730.0022
ALA 2740.0019
LYS 2750.0019
ASP 2760.0019
VAL 2770.0014
LEU 2780.0006
ARG 2790.0005
LYS 2800.0005
THR 2810.0014
SER 2820.0018
ARG 2830.0017
PRO 2840.0024
MET 2850.0018
VAL 2860.0043
ASP 2870.0035
LEU 2880.0013
THR 2890.0059
PHE 2900.0054
GLY 2910.0040
GLY 2920.0121

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.