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***  TLR_3_simulation  ***

<R2> analysis for 2608260325273940753

---  normal mode 68  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.1250
THR 260.0027
LYS 270.0028
CYS 280.0027
THR 290.0030
VAL 300.0039
SER 310.0038
HIS 320.0051
GLU 330.0055
VAL 340.0042
ALA 350.0036
ASP 360.0028
CYS 370.0020
SER 380.0014
HIS 390.0010
LEU 400.0016
LYS 410.0034
LEU 420.0039
THR 430.0052
GLN 440.0052
VAL 450.0042
PRO 460.0054
ASP 470.0066
ASP 480.0074
LEU 490.0063
PRO 500.0072
THR 510.0066
ASN 520.0067
ILE 530.0052
THR 540.0046
VAL 550.0035
LEU 560.0022
ASN 570.0017
LEU 580.0011
THR 590.0012
HIS 600.0016
ASN 610.0029
GLN 620.0042
LEU 630.0037
ARG 640.0047
ARG 650.0039
LEU 660.0039
PRO 670.0044
ALA 680.0035
ALA 690.0044
ASN 700.0043
PHE 710.0034
THR 720.0040
ARG 730.0049
TYR 740.0038
SER 750.0033
GLN 760.0036
LEU 770.0025
THR 780.0033
SER 790.0029
LEU 800.0020
ASP 810.0019
VAL 820.0021
GLY 830.0027
PHE 840.0031
ASN 850.0034
THR 860.0040
ILE 870.0038
SER 880.0043
LYS 890.0041
LEU 900.0037
GLU 910.0041
PRO 920.0042
GLU 930.0035
LEU 940.0029
CYS 950.0034
GLN 960.0030
LYS 970.0023
LEU 980.0025
PRO 990.0032
MET 1000.0037
LEU 1010.0038
LYS 1020.0044
VAL 1030.0039
LEU 1040.0037
ASN 1050.0034
LEU 1060.0032
GLN 1070.0032
HIS 1080.0033
ASN 1090.0033
GLU 1100.0036
LEU 1110.0035
SER 1120.0033
GLN 1130.0037
LEU 1140.0039
SER 1150.0046
ASP 1160.0054
LYS 1170.0054
THR 1180.0048
PHE 1190.0049
ALA 1200.0056
PHE 1210.0055
CYS 1220.0052
THR 1230.0059
ASN 1240.0056
LEU 1250.0051
THR 1260.0046
GLU 1270.0041
LEU 1280.0036
HIS 1290.0032
LEU 1300.0028
MET 1310.0026
SER 1320.0024
ASN 1330.0024
SER 1340.0023
ILE 1350.0025
GLN 1360.0025
LYS 1370.0027
ILE 1380.0028
LYS 1390.0036
ASN 1400.0041
ASN 1410.0044
PRO 1420.0043
PHE 1430.0042
VAL 1440.0047
LYS 1450.0055
GLN 1460.0048
LYS 1470.0051
ASN 1480.0053
LEU 1490.0045
ILE 1500.0045
THR 1510.0033
LEU 1520.0026
ASP 1530.0022
LEU 1540.0017
SER 1550.0018
HIS 1560.0018
ASN 1570.0015
GLY 1580.0017
LEU 1590.0016
SER 1600.0020
SER 1610.0020
THR 1620.0017
LYS 1630.0013
LEU 1640.0018
GLY 1650.0023
THR 1660.0027
GLN 1670.0027
VAL 1680.0026
GLN 1690.0031
LEU 1700.0034
GLU 1710.0032
ASN 1720.0040
LEU 1730.0031
GLN 1740.0035
GLU 1750.0029
LEU 1760.0022
LEU 1770.0022
LEU 1780.0019
SER 1790.0023
ASN 1800.0023
ASN 1810.0020
LYS 1820.0024
ILE 1830.0026
GLN 1840.0032
ALA 1850.0035
LEU 1860.0035
LYS 1870.0034
SER 1880.0034
GLU 1890.0025
GLU 1900.0021
LEU 1910.0021
ASP 1920.0021
ILE 1930.0017
PHE 1940.0026
ALA 1950.0031
ASN 1960.0031
SER 1970.0030
SER 1980.0036
LEU 1990.0032
LYS 2000.0037
LYS 2010.0033
LEU 2020.0031
GLU 2030.0029
LEU 2040.0029
SER 2050.0030
SER 2060.0027
ASN 2070.0028
GLN 2080.0032
ILE 2090.0035
LYS 2100.0039
GLU 2110.0042
PHE 2120.0043
SER 2130.0046
PRO 2140.0050
GLY 2150.0050
CYS 2160.0042
PHE 2170.0043
HIS 2180.0048
ALA 2190.0040
ILE 2200.0039
GLY 2210.0044
ARG 2220.0044
LEU 2230.0040
PHE 2240.0041
GLY 2250.0037
LEU 2260.0035
PHE 2270.0031
LEU 2280.0030
ASN 2290.0027
ASN 2300.0027
VAL 2310.0030
GLN 2320.0029
LEU 2330.0031
GLY 2340.0029
PRO 2350.0029
SER 2360.0037
LEU 2370.0037
THR 2380.0034
GLU 2390.0037
LYS 2400.0043
LEU 2410.0040
CYS 2420.0039
LEU 2430.0045
GLU 2440.0047
LEU 2450.0045
ALA 2460.0049
ASN 2470.0052
THR 2480.0048
SER 2490.0046
ILE 2500.0041
ARG 2510.0032
ASN 2520.0030
LEU 2530.0027
SER 2540.0025
LEU 2550.0023
SER 2560.0024
ASN 2570.0022
SER 2580.0024
GLN 2590.0022
LEU 2600.0021
SER 2610.0020
THR 2620.0021
THR 2630.0021
SER 2640.0021
ASN 2650.0023
THR 2660.0026
THR 2670.0025
PHE 2680.0027
LEU 2690.0028
GLY 2700.0033
LEU 2710.0030
LYS 2720.0031
TRP 2730.0036
THR 2740.0036
ASN 2750.0038
LEU 2760.0028
THR 2770.0032
MET 2780.0030
LEU 2790.0025
ASP 2800.0025
LEU 2810.0026
SER 2820.0025
TYR 2830.0021
ASN 2840.0020
ASN 2850.0020
LEU 2860.0022
ASN 2870.0024
VAL 2880.0027
VAL 2890.0031
GLY 2900.0033
ASN 2910.0034
ASP 2920.0038
SER 2930.0033
PHE 2940.0037
ALA 2950.0044
TRP 2960.0031
LEU 2970.0034
PRO 2980.0039
GLN 2990.0042
LEU 3000.0037
GLU 3010.0041
TYR 3020.0038
PHE 3030.0035
PHE 3040.0032
LEU 3050.0030
GLU 3060.0029
TYR 3070.0023
ASN 3080.0023
ASN 3090.0024
ILE 3100.0029
GLN 3110.0033
HIS 3120.0038
LEU 3130.0041
PHE 3140.0046
SER 3150.0053
HIS 3160.0049
SER 3170.0043
LEU 3180.0045
HIS 3190.0051
GLY 3200.0054
LEU 3210.0048
PHE 3220.0054
ASN 3230.0053
VAL 3240.0045
ARG 3250.0043
TYR 3260.0039
LEU 3270.0038
ASN 3280.0035
LEU 3290.0033
LYS 3300.0030
ARG 3310.0024
SER 3320.0027
PHE 3330.0029
THR 3340.0028
LYS 3350.0029
GLN 3360.0033
SER 3370.0042
ILE 3380.0056
SER 3390.0068
LEU 3400.0062
ALA 3410.0051
SER 3420.0039
LEU 3430.0039
PRO 3440.0034
LYS 3450.0046
ILE 3460.0043
ASP 3470.0049
ASP 3480.0051
PHE 3490.0052
SER 3500.0049
PHE 3510.0045
GLN 3520.0051
TRP 3530.0055
LEU 3540.0049
LYS 3550.0052
CYS 3560.0048
LEU 3570.0042
GLU 3580.0036
HIS 3590.0035
LEU 3600.0033
ASN 3610.0031
MET 3620.0030
GLU 3630.0027
ASP 3640.0026
ASN 3650.0028
ASP 3660.0029
ILE 3670.0029
PRO 3680.0030
GLY 3690.0029
ILE 3700.0029
LYS 3710.0038
SER 3720.0038
ASN 3730.0039
MET 3740.0035
PHE 3750.0030
THR 3760.0036
GLY 3770.0039
LEU 3780.0033
ILE 3790.0032
ASN 3800.0033
LEU 3810.0026
LYS 3820.0029
TYR 3830.0030
LEU 3840.0022
SER 3850.0023
LEU 3860.0020
SER 3870.0020
ASN 3880.0020
SER 3890.0023
PHE 3900.0022
THR 3910.0034
SER 3920.0028
LEU 3930.0020
ARG 3940.0031
THR 3950.0037
LEU 3960.0040
THR 3970.0052
ASN 3980.0056
GLU 3990.0041
THR 4000.0026
PHE 4010.0023
VAL 4020.0024
SER 4030.0016
LEU 4040.0018
ALA 4050.0024
HIS 4060.0018
SER 4070.0019
PRO 4080.0031
LEU 4090.0029
HIS 4100.0042
ILE 4110.0039
LEU 4120.0028
ASN 4130.0024
LEU 4140.0017
THR 4150.0016
LYS 4160.0013
ASN 4170.0014
LYS 4180.0023
ILE 4190.0025
SER 4200.0039
LYS 4210.0050
ILE 4220.0052
GLU 4230.0064
SER 4240.0075
ASP 4250.0071
ALA 4260.0054
PHE 4270.0052
SER 4280.0061
TRP 4290.0049
LEU 4300.0050
GLY 4310.0065
HIS 4320.0063
LEU 4330.0056
GLU 4340.0063
VAL 4350.0053
LEU 4360.0045
ASP 4370.0034
LEU 4380.0029
GLY 4390.0023
LEU 4400.0013
ASN 4410.0019
GLU 4420.0030
ILE 4430.0037
GLY 4440.0049
GLN 4450.0059
GLU 4460.0063
LEU 4470.0064
THR 4480.0079
GLY 4490.0080
GLN 4500.0088
GLU 4510.0071
TRP 4520.0072
ARG 4530.0084
GLY 4540.0085
LEU 4550.0078
GLU 4560.0086
ASN 4570.0082
ILE 4580.0070
PHE 4590.0069
GLU 4600.0055
ILE 4610.0049
TYR 4620.0037
LEU 4630.0032
SER 4640.0022
TYR 4650.0013
ASN 4660.0023
LYS 4670.0032
TYR 4680.0039
LEU 4690.0043
GLN 4700.0053
LEU 4710.0055
THR 4720.0067
ARG 4730.0073
ASN 4740.0081
SER 4750.0070
PHE 4760.0069
ALA 4770.0083
LEU 4780.0087
VAL 4790.0081
PRO 4800.0086
SER 4810.0081
LEU 4820.0068
GLN 4830.0065
ARG 4840.0053
LEU 4850.0043
MET 4860.0031
LEU 4870.0026
ARG 4880.0016
ARG 4890.0012
VAL 4900.0021
ALA 4910.0027
LEU 4920.0031
LYS 4930.0038
ASN 4940.0044
VAL 4950.0039
ASP 4960.0031
SER 4970.0045
SER 4980.0051
PRO 4990.0056
SER 5000.0048
PRO 5010.0048
PHE 5020.0048
GLN 5030.0054
PRO 5040.0062
LEU 5050.0060
ARG 5060.0054
ASN 5070.0058
LEU 5080.0047
THR 5090.0047
ILE 5100.0038
LEU 5110.0027
ASP 5120.0020
LEU 5130.0015
SER 5140.0009
ASN 5150.0002
ASN 5160.0010
ASN 5170.0006
ILE 5180.0006
ALA 5190.0003
ASN 5200.0006
ILE 5210.0010
ASN 5220.0015
ASP 5230.0022
ASP 5240.0030
MET 5250.0029
LEU 5260.0026
GLU 5270.0032
GLY 5280.0039
LEU 5290.0038
GLU 5300.0044
LYS 5310.0034
LEU 5320.0028
GLU 5330.0031
ILE 5340.0026
LEU 5350.0020
ASP 5360.0011
LEU 5370.0009
GLN 5380.0007
HIS 5390.0006
ASN 5400.0005
ASN 5410.0009
LEU 5420.0010
ALA 5430.0016
ARG 5440.0019
LEU 5450.0019
TRP 5460.0022
LYS 5470.0029
HIS 5480.0035
ALA 5490.0039
ASN 5500.0034
PRO 5510.0041
GLY 5520.0043
GLY 5530.0040
PRO 5540.0030
ILE 5550.0024
TYR 5560.0026
PHE 5570.0023
LEU 5580.0024
LYS 5590.0029
GLY 5600.0032
LEU 5610.0029
SER 5620.0026
HIS 5630.0023
LEU 5640.0019
HIS 5650.0013
ILE 5660.0011
LEU 5670.0009
ASN 5680.0005
LEU 5690.0008
GLU 5700.0010
SER 5710.0012
ASN 5720.0011
GLY 5730.0015
PHE 5740.0014
ASP 5750.0017
GLU 5760.0019
ILE 5770.0014
PRO 5780.0019
VAL 5790.0019
GLU 5800.0021
VAL 5810.0020
PHE 5820.0015
LYS 5830.0021
ASP 5840.0023
LEU 5850.0018
PHE 5860.0020
GLU 5870.0028
LEU 5880.0013
LYS 5890.0018
ILE 5900.0013
ILE 5910.0008
ASP 5920.0012
LEU 5930.0013
GLY 5940.0017
LEU 5950.0021
ASN 5960.0022
ASN 5970.0022
LEU 5980.0020
ASN 5990.0020
THR 6000.0020
LEU 6010.0017
PRO 6020.0013
ALA 6030.0012
SER 6040.0009
VAL 6050.0008
PHE 6060.0015
ASN 6070.0015
ASN 6080.0011
GLN 6090.0018
VAL 6100.0025
SER 6110.0028
LEU 6120.0024
LYS 6130.0029
SER 6140.0026
LEU 6150.0024
ASN 6160.0026
LEU 6170.0026
GLN 6180.0030
LYS 6190.0034
ASN 6200.0032
LEU 6210.0034
ILE 6220.0034
THR 6230.0033
SER 6240.0037
VAL 6250.0035
GLU 6260.0029
LYS 6270.0028
LYS 6280.0030
VAL 6290.0031
PHE 6300.0029
GLY 6310.0038
PRO 6320.0036
ALA 6330.0030
PHE 6340.0031
ARG 6350.0036
ASN 6360.0035
LEU 6370.0032
THR 6380.0030
GLU 6390.0028
LEU 6400.0028
ASP 6410.0031
MET 6420.0030
ARG 6430.0032
PHE 6440.0035
ASN 6450.0035
PRO 6460.0044
PHE 6470.0038
ASP 6480.0047
CYS 6490.0043
THR 6500.0054
CYS 6510.0052
GLU 6520.0057
SER 6530.0049
ILE 6540.0035
ALA 6550.0034
TRP 6560.0024
PHE 6570.0022
VAL 6580.0018
ASN 6590.0012
TRP 6600.0011
ILE 6610.0009
ASN 6620.0007
GLU 6630.0007
THR 6640.0009
HIS 6650.0012
THR 6660.0024
ASN 6670.0024
ILE 6680.0024
PRO 6690.0025
GLU 6700.0026
LEU 6710.0018
SER 6720.0015
SER 6730.0018
HIS 6740.0025
TYR 6750.0024
LEU 6760.0028
CYS 6770.0041
ASN 6780.0056
THR 6790.0069
PRO 6800.0075
PRO 6810.0086
HIS 6820.0082
TYR 6830.0062
HIS 6840.0061
GLY 6850.0043
PHE 6860.0038
PRO 6870.0025
VAL 6880.0026
ARG 6890.0018
LEU 6900.0032
PHE 6910.0038
ASP 6920.0053
THR 6930.0051
SER 6940.0068
SER 6950.0079
CYS 6960.0069
GLU 10.0081
ALA 20.0075
ALA 30.0070
ALA 40.0059
LYS 50.0049
MET 60.0049
GLN 70.0047
ARG 80.0034
LEU 90.0034
VAL 100.0039
LEU 110.0031
LEU 120.0023
LEU 130.0033
ALA 140.0032
ILE 150.0021
SER 160.0027
LEU 170.0034
LEU 180.0023
LEU 190.0026
TYR 200.0037
GLN 210.0033
ASP 220.0035
LEU 230.0053
PRO 240.0059
VAL 250.0064
ARG 260.0071
SER 270.0082
GLU 280.0067
PHE 290.0107
GLU 300.0099
LEU 310.0047
ASP 320.0037
ARG 330.0043
ILE 340.0027
CYS 350.0003
GLY 360.0035
TYR 370.0052
GLY 380.0030
THR 390.0040
ALA 400.0024
ARG 410.0026
CYS 420.0027
ARG 430.0026
LYS 440.0029
LYS 450.0030
CYS 460.0037
ARG 470.0047
SER 480.0051
GLN 490.0050
GLU 500.0037
TYR 510.0027
ARG 520.0026
ILE 530.0029
GLY 540.0029
ARG 550.0027
CYS 560.0027
PRO 570.0030
ASN 580.0025
THR 590.0029
TYR 600.0024
ALA 610.0030
CYS 620.0023
CYS 630.0030
LEU 640.0033
ARG 650.0045
LYS 660.0066
TRP 670.0068
ASP 680.0063
GLU 690.0058
SER 700.0058
LEU 710.0060
LEU 720.0066
ASN 730.0045
ARG 740.0039
THR 750.0060
LYS 760.0066
PRO 770.0080
GLU 780.0077
ALA 790.0095
ALA 800.0110
ALA 810.0092
LYS 820.0063
LYS 830.0106
GLU 840.0060
MET 850.0109
ASN 860.0059
LEU 870.0069
SER 880.0064
VAL 890.0037
GLY 900.0099
LEU 910.0148
GLY 920.0294
GLY 930.0499
GLY 940.0510
SER 950.0382
ASN 960.0192
LEU 970.0138
SER 980.0095
VAL 990.0092
GLY 1000.0087
LEU 1010.0133
GLY 1020.0072
GLU 1030.0040
ILE 1040.0096
GLY 1050.0180
GLY 1060.0403
GLY 1070.0295
SER 1080.0220
LYS 1090.0083
LEU 1100.0068
LEU 1110.0095
ASP 1120.0139
ILE 1130.0086
ASN 1140.0155
LEU 1150.0098
GLY 1160.0204
ARG 1170.0283
GLY 1180.0312
GLY 1190.0260
GLY 1200.0147
SER 1210.0043
MET 1220.0017
VAL 1230.0060
ASP 1240.0095
LEU 1250.0144
THR 1260.0190
PHE 1270.0234
GLY 1280.0288
GLY 1290.0305
VAL 1300.0355
GLY 1310.0349
GLY 1320.0342
GLY 1330.0244
SER 1340.0315
THR 1350.0275
PHE 1360.0313
THR 1370.0319
PHE 1380.0231
PHE 1390.0253
PRO 1400.0208
LEU 1410.0161
VAL 1420.0452
ILE 1430.0632
GLY 1440.0938
GLY 1450.1250
GLY 1460.1121
SER 1470.0844
ASP 1480.0522
ALA 1490.0417
MET 1500.0173
TYR 1510.0145
LEU 1520.0130
GLY 1530.0191
PHE 1540.0280
ALA 1550.0382
ALA 1560.0482
GLY 1570.0423
GLY 1580.0347
GLY 1590.0225
SER 1600.0084
ALA 1610.0091
GLY 1620.0040
GLY 1630.0091
GLU 1640.0129
ASN 1650.0059
HIS 1660.0119
VAL 1670.0079
ALA 1680.0059
PHE 1690.0043
GLY 1700.0049
PRO 1710.0405
GLY 1720.0483
PRO 1730.0510
GLY 1740.0329
VAL 1750.0132
ASP 1760.0133
LEU 1770.0113
THR 1780.0145
PHE 1790.0134
GLY 1800.0183
GLY 1810.0382
VAL 1820.0392
GLN 1830.0329
PHE 1840.0304
ALA 1850.0291
MET 1860.0159
VAL 1870.0218
ASN 1880.0165
ASN 1890.0272
GLY 1900.0198
PRO 1910.0377
GLY 1920.0354
PRO 1930.0247
GLY 1940.0247
GLU 1950.0257
SER 1960.0158
PHE 1970.0166
THR 1980.0060
ALA 1990.0122
GLN 2000.0103
PRO 2010.0055
ALA 2020.0121
ASP 2030.0094
MET 2040.0301
GLN 2050.0385
ALA 2060.0312
GLY 2070.0227
ILE 2080.0232
LYS 2090.0208
GLY 2100.0190
PRO 2110.0106
GLY 2120.0127
PRO 2130.0125
GLY 2140.0245
GLY 2150.0250
SER 2160.0229
ILE 2170.0207
GLN 2180.0254
VAL 2190.0263
ILE 2200.0328
ASN 2210.0369
GLY 2220.0301
SER 2230.0180
THR 2240.0102
ILE 2250.0164
GLY 2260.0278
THR 2270.0227
GLY 2280.0118
SER 2290.0034
LYS 2300.0088
LYS 2310.0039
THR 2320.0060
ILE 2330.0066
LEU 2340.0044
ILE 2350.0110
TYR 2360.0059
SER 2370.0065
ILE 2380.0058
ILE 2390.0069
GLY 2400.0105
VAL 2410.0103
LYS 2420.0137
LYS 2430.0127
GLY 2440.0103
THR 2450.0146
LEU 2460.0101
ALA 2470.0081
TRP 2480.0048
ALA 2490.0042
ARG 2500.0041
THR 2510.0104
GLY 2520.0100
PHE 2530.0101
SER 2540.0104
PRO 2550.0116
ALA 2560.0044
LYS 2570.0040
LYS 2580.0174
LEU 2590.0310
ASN 2600.0446
ALA 2610.0439
GLY 2620.0251
VAL 2630.0107
VAL 2640.0128
ARG 2650.0230
VAL 2660.0127
PHE 2670.0151
PHE 2680.0140
LEU 2690.0181
ASN 2700.0176
GLN 2710.0178
LYS 2720.0113
LYS 2730.0114
ALA 2740.0126
LYS 2750.0084
ASP 2760.0072
VAL 2770.0042
LEU 2780.0174
ARG 2790.0211
LYS 2800.0142
THR 2810.0009
SER 2820.0040
ARG 2830.0059
PRO 2840.0108
MET 2850.0133
VAL 2860.0134
ASP 2870.0123
LEU 2880.0072
THR 2890.0055
PHE 2900.0094
GLY 2910.0086
GLY 2920.0148

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.