CNRS Nantes University US2B US2B
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***  TLR_3_simulation  ***

<R2> analysis for 2608260325273940753

---  normal mode 69  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0607
THR 260.0058
LYS 270.0063
CYS 280.0062
THR 290.0056
VAL 300.0061
SER 310.0051
HIS 320.0051
GLU 330.0058
VAL 340.0056
ALA 350.0059
ASP 360.0051
CYS 370.0053
SER 380.0042
HIS 390.0032
LEU 400.0041
LYS 410.0044
LEU 420.0056
THR 430.0067
GLN 440.0075
VAL 450.0074
PRO 460.0081
ASP 470.0086
ASP 480.0081
LEU 490.0074
PRO 500.0073
THR 510.0071
ASN 520.0065
ILE 530.0060
THR 540.0058
VAL 550.0056
LEU 560.0057
ASN 570.0050
LEU 580.0053
THR 590.0048
HIS 600.0044
ASN 610.0049
GLN 620.0059
LEU 630.0064
ARG 640.0075
ARG 650.0078
LEU 660.0079
PRO 670.0086
ALA 680.0089
ALA 690.0092
ASN 700.0081
PHE 710.0080
THR 720.0083
ARG 730.0078
TYR 740.0071
SER 750.0072
GLN 760.0059
LEU 770.0054
THR 780.0052
SER 790.0050
LEU 800.0052
ASP 810.0047
VAL 820.0051
GLY 830.0054
PHE 840.0056
ASN 850.0058
THR 860.0067
ILE 870.0068
SER 880.0082
LYS 890.0082
LEU 900.0072
GLU 910.0084
PRO 920.0082
GLU 930.0081
LEU 940.0073
CYS 950.0069
GLN 960.0076
LYS 970.0074
LEU 980.0065
PRO 990.0062
MET 1000.0057
LEU 1010.0050
LYS 1020.0047
VAL 1030.0048
LEU 1040.0049
ASN 1050.0055
LEU 1060.0054
GLN 1070.0066
HIS 1080.0075
ASN 1090.0071
GLU 1100.0082
LEU 1110.0073
SER 1120.0084
GLN 1130.0082
LEU 1140.0073
SER 1150.0073
ASP 1160.0080
LYS 1170.0076
THR 1180.0065
PHE 1190.0058
ALA 1200.0064
PHE 1210.0066
CYS 1220.0054
THR 1230.0052
ASN 1240.0047
LEU 1250.0047
THR 1260.0049
GLU 1270.0054
LEU 1280.0054
HIS 1290.0064
LEU 1300.0068
MET 1310.0079
SER 1320.0089
ASN 1330.0081
SER 1340.0093
ILE 1350.0086
GLN 1360.0084
LYS 1370.0084
ILE 1380.0074
LYS 1390.0081
ASN 1400.0083
ASN 1410.0067
PRO 1420.0057
PHE 1430.0052
VAL 1440.0053
LYS 1450.0049
GLN 1460.0046
LYS 1470.0044
ASN 1480.0043
LEU 1490.0048
ILE 1500.0057
THR 1510.0059
LEU 1520.0059
ASP 1530.0072
LEU 1540.0076
SER 1550.0091
HIS 1560.0103
ASN 1570.0100
GLY 1580.0105
LEU 1590.0093
SER 1600.0096
SER 1610.0091
THR 1620.0079
LYS 1630.0071
LEU 1640.0061
GLY 1650.0058
THR 1660.0070
GLN 1670.0059
VAL 1680.0051
GLN 1690.0043
LEU 1700.0042
GLU 1710.0045
ASN 1720.0046
LEU 1730.0051
GLN 1740.0059
GLU 1750.0067
LEU 1760.0063
LEU 1770.0076
LEU 1780.0083
SER 1790.0096
ASN 1800.0108
ASN 1810.0106
LYS 1820.0109
ILE 1830.0092
GLN 1840.0093
ALA 1850.0080
LEU 1860.0076
LYS 1870.0073
SER 1880.0064
GLU 1890.0064
GLU 1900.0066
LEU 1910.0060
ASP 1920.0054
ILE 1930.0048
PHE 1940.0047
ALA 1950.0044
ASN 1960.0044
SER 1970.0044
SER 1980.0048
LEU 1990.0057
LYS 2000.0064
LYS 2010.0066
LEU 2020.0070
GLU 2030.0078
LEU 2040.0083
SER 2050.0090
SER 2060.0093
ASN 2070.0094
GLN 2080.0097
ILE 2090.0089
LYS 2100.0095
GLU 2110.0087
PHE 2120.0076
SER 2130.0074
PRO 2140.0070
GLY 2150.0060
CYS 2160.0067
PHE 2170.0057
HIS 2180.0050
ALA 2190.0052
ILE 2200.0049
GLY 2210.0046
ARG 2220.0050
LEU 2230.0058
PHE 2240.0063
GLY 2250.0071
LEU 2260.0070
PHE 2270.0073
LEU 2280.0076
ASN 2290.0077
ASN 2300.0081
VAL 2310.0079
GLN 2320.0072
LEU 2330.0070
GLY 2340.0060
PRO 2350.0057
SER 2360.0065
LEU 2370.0070
THR 2380.0065
GLU 2390.0066
LYS 2400.0075
LEU 2410.0071
CYS 2420.0067
LEU 2430.0069
GLU 2440.0072
LEU 2450.0068
ALA 2460.0070
ASN 2470.0069
THR 2480.0071
SER 2490.0066
ILE 2500.0065
ARG 2510.0075
ASN 2520.0071
LEU 2530.0068
SER 2540.0063
LEU 2550.0059
SER 2560.0051
ASN 2570.0051
SER 2580.0056
GLN 2590.0052
LEU 2600.0049
SER 2610.0043
THR 2620.0049
THR 2630.0059
SER 2640.0069
ASN 2650.0081
THR 2660.0075
THR 2670.0071
PHE 2680.0071
LEU 2690.0077
GLY 2700.0082
LEU 2710.0074
LYS 2720.0075
TRP 2730.0081
THR 2740.0079
ASN 2750.0075
LEU 2760.0080
THR 2770.0076
MET 2780.0070
LEU 2790.0064
ASP 2800.0059
LEU 2810.0044
SER 2820.0043
TYR 2830.0038
ASN 2840.0033
ASN 2850.0030
LEU 2860.0040
ASN 2870.0030
VAL 2880.0044
VAL 2890.0056
GLY 2900.0071
ASN 2910.0083
ASP 2920.0087
SER 2930.0083
PHE 2940.0079
ALA 2950.0090
TRP 2960.0084
LEU 2970.0081
PRO 2980.0082
GLN 2990.0084
LEU 3000.0075
GLU 3010.0076
TYR 3020.0070
PHE 3030.0061
PHE 3040.0054
LEU 3050.0045
GLU 3060.0050
TYR 3070.0045
ASN 3080.0037
ASN 3090.0033
ILE 3100.0031
GLN 3110.0030
HIS 3120.0048
LEU 3130.0058
PHE 3140.0079
SER 3150.0093
HIS 3160.0091
SER 3170.0080
LEU 3180.0072
HIS 3190.0088
GLY 3200.0094
LEU 3210.0081
PHE 3220.0083
ASN 3230.0081
VAL 3240.0066
ARG 3250.0054
TYR 3260.0055
LEU 3270.0049
ASN 3280.0046
LEU 3290.0043
LYS 3300.0041
ARG 3310.0064
SER 3320.0051
PHE 3330.0041
THR 3340.0031
LYS 3350.0039
GLN 3360.0021
SER 3370.0036
ILE 3380.0074
SER 3390.0108
LEU 3400.0106
ALA 3410.0048
SER 3420.0022
LEU 3430.0019
PRO 3440.0038
LYS 3450.0055
ILE 3460.0066
ASP 3470.0089
ASP 3480.0099
PHE 3490.0098
SER 3500.0084
PHE 3510.0069
GLN 3520.0083
TRP 3530.0087
LEU 3540.0069
LYS 3550.0069
CYS 3560.0059
LEU 3570.0045
GLU 3580.0025
HIS 3590.0021
LEU 3600.0020
ASN 3610.0025
MET 3620.0030
GLU 3630.0023
ASP 3640.0025
ASN 3650.0037
ASP 3660.0033
ILE 3670.0049
PRO 3680.0062
GLY 3690.0072
ILE 3700.0081
LYS 3710.0097
SER 3720.0110
ASN 3730.0104
MET 3740.0083
PHE 3750.0072
THR 3760.0089
GLY 3770.0087
LEU 3780.0063
ILE 3790.0065
ASN 3800.0042
LEU 3810.0034
LYS 3820.0025
TYR 3830.0020
LEU 3840.0026
SER 3850.0022
LEU 3860.0036
SER 3870.0029
ASN 3880.0028
SER 3890.0035
PHE 3900.0049
THR 3910.0048
SER 3920.0063
LEU 3930.0075
ARG 3940.0090
THR 3950.0106
LEU 3960.0107
THR 3970.0122
ASN 3980.0128
GLU 3990.0121
THR 4000.0103
PHE 4010.0097
VAL 4020.0109
SER 4030.0095
LEU 4040.0082
ALA 4050.0097
HIS 4060.0094
SER 4070.0071
PRO 4080.0063
LEU 4090.0059
HIS 4100.0062
ILE 4110.0060
LEU 4120.0061
ASN 4130.0057
LEU 4140.0063
THR 4150.0060
LYS 4160.0055
ASN 4170.0060
LYS 4180.0071
ILE 4190.0081
SER 4200.0095
LYS 4210.0107
ILE 4220.0108
GLU 4230.0119
SER 4240.0127
ASP 4250.0120
ALA 4260.0118
PHE 4270.0108
SER 4280.0119
TRP 4290.0106
LEU 4300.0094
GLY 4310.0103
HIS 4320.0089
LEU 4330.0087
GLU 4340.0090
VAL 4350.0085
LEU 4360.0083
ASP 4370.0078
LEU 4380.0078
GLY 4390.0076
LEU 4400.0069
ASN 4410.0077
GLU 4420.0080
ILE 4430.0085
GLY 4440.0090
GLN 4450.0095
GLU 4460.0086
LEU 4470.0094
THR 4480.0102
GLY 4490.0108
GLN 4500.0109
GLU 4510.0108
TRP 4520.0108
ARG 4530.0114
GLY 4540.0111
LEU 4550.0106
GLU 4560.0109
ASN 4570.0103
ILE 4580.0099
PHE 4590.0101
GLU 4600.0094
ILE 4610.0083
TYR 4620.0077
LEU 4630.0073
SER 4640.0070
TYR 4650.0064
ASN 4660.0074
LYS 4670.0075
TYR 4680.0075
LEU 4690.0075
GLN 4700.0075
LEU 4710.0075
THR 4720.0073
ARG 4730.0076
ASN 4740.0083
SER 4750.0086
PHE 4760.0093
ALA 4770.0098
LEU 4780.0096
VAL 4790.0093
PRO 4800.0098
SER 4810.0094
LEU 4820.0084
GLN 4830.0086
ARG 4840.0077
LEU 4850.0068
MET 4860.0058
LEU 4870.0056
ARG 4880.0054
ARG 4890.0051
VAL 4900.0050
ALA 4910.0057
LEU 4920.0054
LYS 4930.0059
ASN 4940.0059
VAL 4950.0053
ASP 4960.0045
SER 4970.0050
SER 4980.0055
PRO 4990.0061
SER 5000.0058
PRO 5010.0063
PHE 5020.0068
GLN 5030.0068
PRO 5040.0073
LEU 5050.0076
ARG 5060.0072
ASN 5070.0075
LEU 5080.0058
THR 5090.0060
ILE 5100.0046
LEU 5110.0042
ASP 5120.0038
LEU 5130.0033
SER 5140.0033
ASN 5150.0030
ASN 5160.0031
ASN 5170.0035
ILE 5180.0030
ALA 5190.0034
ASN 5200.0027
ILE 5210.0030
ASN 5220.0033
ASP 5230.0041
ASP 5240.0046
MET 5250.0043
LEU 5260.0037
GLU 5270.0043
GLY 5280.0050
LEU 5290.0046
GLU 5300.0052
LYS 5310.0051
LEU 5320.0037
GLU 5330.0039
ILE 5340.0029
LEU 5350.0022
ASP 5360.0028
LEU 5370.0028
GLN 5380.0032
HIS 5390.0033
ASN 5400.0028
ASN 5410.0035
LEU 5420.0033
ALA 5430.0035
ARG 5440.0033
LEU 5450.0031
TRP 5460.0034
LYS 5470.0034
HIS 5480.0035
ALA 5490.0034
ASN 5500.0031
PRO 5510.0032
GLY 5520.0034
GLY 5530.0035
PRO 5540.0033
ILE 5550.0029
TYR 5560.0024
PHE 5570.0021
LEU 5580.0025
LYS 5590.0027
GLY 5600.0029
LEU 5610.0024
SER 5620.0028
HIS 5630.0020
LEU 5640.0019
HIS 5650.0027
ILE 5660.0033
LEU 5670.0032
ASN 5680.0036
LEU 5690.0035
GLU 5700.0044
SER 5710.0048
ASN 5720.0044
GLY 5730.0045
PHE 5740.0044
ASP 5750.0044
GLU 5760.0044
ILE 5770.0043
PRO 5780.0037
VAL 5790.0040
GLU 5800.0035
VAL 5810.0028
PHE 5820.0031
LYS 5830.0028
ASP 5840.0020
LEU 5850.0024
PHE 5860.0038
GLU 5870.0040
LEU 5880.0041
LYS 5890.0049
ILE 5900.0050
ILE 5910.0054
ASP 5920.0058
LEU 5930.0059
GLY 5940.0065
LEU 5950.0067
ASN 5960.0075
ASN 5970.0075
LEU 5980.0076
ASN 5990.0075
THR 6000.0077
LEU 6010.0064
PRO 6020.0065
ALA 6030.0066
SER 6040.0067
VAL 6050.0067
PHE 6060.0065
ASN 6070.0059
ASN 6080.0053
GLN 6090.0058
VAL 6100.0055
SER 6110.0063
LEU 6120.0070
LYS 6130.0077
SER 6140.0081
LEU 6150.0081
ASN 6160.0083
LEU 6170.0087
GLN 6180.0087
LYS 6190.0092
ASN 6200.0095
LEU 6210.0105
ILE 6220.0112
THR 6230.0108
SER 6240.0126
VAL 6250.0132
GLU 6260.0101
LYS 6270.0104
LYS 6280.0113
VAL 6290.0109
PHE 6300.0101
GLY 6310.0093
PRO 6320.0089
ALA 6330.0093
PHE 6340.0096
ARG 6350.0093
ASN 6360.0091
LEU 6370.0091
THR 6380.0092
GLU 6390.0092
LEU 6400.0092
ASP 6410.0092
MET 6420.0095
ARG 6430.0087
PHE 6440.0089
ASN 6450.0097
PRO 6460.0106
PHE 6470.0111
ASP 6480.0133
CYS 6490.0132
THR 6500.0165
CYS 6510.0186
GLU 6520.0204
SER 6530.0173
ILE 6540.0143
ALA 6550.0159
TRP 6560.0124
PHE 6570.0113
VAL 6580.0103
ASN 6590.0106
TRP 6600.0101
ILE 6610.0096
ASN 6620.0100
GLU 6630.0108
THR 6640.0102
HIS 6650.0099
THR 6660.0085
ASN 6670.0075
ILE 6680.0074
PRO 6690.0065
GLU 6700.0056
LEU 6710.0055
SER 6720.0045
SER 6730.0039
HIS 6740.0058
TYR 6750.0071
LEU 6760.0069
CYS 6770.0098
ASN 6780.0106
THR 6790.0141
PRO 6800.0152
PRO 6810.0142
HIS 6820.0148
TYR 6830.0124
HIS 6840.0098
GLY 6850.0063
PHE 6860.0081
PRO 6870.0070
VAL 6880.0095
ARG 6890.0087
LEU 6900.0101
PHE 6910.0111
ASP 6920.0173
THR 6930.0203
SER 6940.0257
SER 6950.0281
CYS 6960.0284
GLU 10.0348
ALA 20.0301
ALA 30.0193
ALA 40.0169
LYS 50.0183
MET 60.0129
GLN 70.0068
ARG 80.0058
LEU 90.0112
VAL 100.0097
LEU 110.0058
LEU 120.0080
LEU 130.0117
ALA 140.0113
ILE 150.0114
SER 160.0149
LEU 170.0200
LEU 180.0204
LEU 190.0193
TYR 200.0248
GLN 210.0309
ASP 220.0312
LEU 230.0322
PRO 240.0347
VAL 250.0348
ARG 260.0246
SER 270.0077
GLU 280.0277
PHE 290.0337
GLU 300.0222
LEU 310.0055
ASP 320.0115
ARG 330.0136
ILE 340.0050
CYS 350.0039
GLY 360.0053
TYR 370.0070
GLY 380.0055
THR 390.0053
ALA 400.0010
ARG 410.0018
CYS 420.0022
ARG 430.0008
LYS 440.0024
LYS 450.0036
CYS 460.0053
ARG 470.0075
SER 480.0100
GLN 490.0093
GLU 500.0061
TYR 510.0044
ARG 520.0032
ILE 530.0020
GLY 540.0031
ARG 550.0036
CYS 560.0062
PRO 570.0093
ASN 580.0069
THR 590.0063
TYR 600.0026
ALA 610.0033
CYS 620.0013
CYS 630.0025
LEU 640.0033
ARG 650.0057
LYS 660.0077
TRP 670.0076
ASP 680.0091
GLU 690.0066
SER 700.0097
LEU 710.0102
LEU 720.0080
ASN 730.0060
ARG 740.0079
THR 750.0090
LYS 760.0090
PRO 770.0113
GLU 780.0075
ALA 790.0114
ALA 800.0170
ALA 810.0273
LYS 820.0277
LYS 830.0209
GLU 840.0195
MET 850.0143
ASN 860.0114
LEU 870.0084
SER 880.0092
VAL 890.0089
GLY 900.0136
LEU 910.0202
GLY 920.0373
GLY 930.0607
GLY 940.0603
SER 950.0473
ASN 960.0235
LEU 970.0212
SER 980.0179
VAL 990.0176
GLY 1000.0185
LEU 1010.0171
GLY 1020.0154
GLU 1030.0177
ILE 1040.0125
GLY 1050.0201
GLY 1060.0317
GLY 1070.0261
SER 1080.0239
LYS 1090.0140
LEU 1100.0109
LEU 1110.0111
ASP 1120.0101
ILE 1130.0077
ASN 1140.0077
LEU 1150.0059
GLY 1160.0105
ARG 1170.0135
GLY 1180.0116
GLY 1190.0099
GLY 1200.0089
SER 1210.0060
MET 1220.0083
VAL 1230.0071
ASP 1240.0082
LEU 1250.0079
THR 1260.0100
PHE 1270.0116
GLY 1280.0123
GLY 1290.0155
VAL 1300.0173
GLY 1310.0121
GLY 1320.0103
GLY 1330.0083
SER 1340.0100
THR 1350.0089
PHE 1360.0090
THR 1370.0101
PHE 1380.0110
PHE 1390.0137
PRO 1400.0147
LEU 1410.0185
VAL 1420.0233
ILE 1430.0279
GLY 1440.0360
GLY 1450.0478
GLY 1460.0425
SER 1470.0301
ASP 1480.0174
ALA 1490.0167
MET 1500.0137
TYR 1510.0154
LEU 1520.0133
GLY 1530.0141
PHE 1540.0128
ALA 1550.0127
ALA 1560.0107
GLY 1570.0095
GLY 1580.0077
GLY 1590.0065
SER 1600.0055
ALA 1610.0064
GLY 1620.0092
GLY 1630.0102
GLU 1640.0118
ASN 1650.0091
HIS 1660.0099
VAL 1670.0115
ALA 1680.0134
PHE 1690.0155
GLY 1700.0170
PRO 1710.0510
GLY 1720.0560
PRO 1730.0561
GLY 1740.0355
VAL 1750.0153
ASP 1760.0120
LEU 1770.0041
THR 1780.0099
PHE 1790.0075
GLY 1800.0144
GLY 1810.0305
VAL 1820.0312
GLN 1830.0275
PHE 1840.0224
ALA 1850.0234
MET 1860.0139
VAL 1870.0245
ASN 1880.0161
ASN 1890.0087
GLY 1900.0211
PRO 1910.0387
GLY 1920.0268
PRO 1930.0029
GLY 1940.0179
GLU 1950.0152
SER 1960.0249
PHE 1970.0155
THR 1980.0148
ALA 1990.0116
GLN 2000.0039
PRO 2010.0017
ALA 2020.0040
ASP 2030.0105
MET 2040.0119
GLN 2050.0116
ALA 2060.0109
GLY 2070.0137
ILE 2080.0209
LYS 2090.0311
GLY 2100.0326
PRO 2110.0354
GLY 2120.0263
PRO 2130.0175
GLY 2140.0162
GLY 2150.0171
SER 2160.0255
ILE 2170.0176
GLN 2180.0183
VAL 2190.0145
ILE 2200.0221
ASN 2210.0308
GLY 2220.0214
SER 2230.0309
THR 2240.0329
ILE 2250.0243
GLY 2260.0145
THR 2270.0045
GLY 2280.0122
SER 2290.0219
LYS 2300.0182
LYS 2310.0114
THR 2320.0107
ILE 2330.0084
LEU 2340.0054
ILE 2350.0065
TYR 2360.0054
SER 2370.0074
ILE 2380.0073
ILE 2390.0092
GLY 2400.0106
VAL 2410.0124
LYS 2420.0141
LYS 2430.0144
GLY 2440.0145
THR 2450.0143
LEU 2460.0076
ALA 2470.0065
TRP 2480.0043
ALA 2490.0077
ARG 2500.0086
THR 2510.0089
GLY 2520.0111
PHE 2530.0076
SER 2540.0099
PRO 2550.0063
ALA 2560.0118
LYS 2570.0172
LYS 2580.0189
LEU 2590.0181
ASN 2600.0212
ALA 2610.0141
GLY 2620.0108
VAL 2630.0073
VAL 2640.0080
ARG 2650.0052
VAL 2660.0031
PHE 2670.0029
PHE 2680.0025
LEU 2690.0053
ASN 2700.0070
GLN 2710.0089
LYS 2720.0087
LYS 2730.0064
ALA 2740.0033
LYS 2750.0026
ASP 2760.0030
VAL 2770.0031
LEU 2780.0012
ARG 2790.0032
LYS 2800.0047
THR 2810.0031
SER 2820.0018
ARG 2830.0024
PRO 2840.0033
MET 2850.0056
VAL 2860.0064
ASP 2870.0045
LEU 2880.0005
THR 2890.0016
PHE 2900.0065
GLY 2910.0044
GLY 2920.0096

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.