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***  TLR_3_simulation  ***

<R2> analysis for 2608260325273940753

---  normal mode 7  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0441
THR 260.0082
LYS 270.0086
CYS 280.0087
THR 290.0081
VAL 300.0087
SER 310.0082
HIS 320.0089
GLU 330.0097
VAL 340.0091
ALA 350.0092
ASP 360.0084
CYS 370.0089
SER 380.0083
HIS 390.0081
LEU 400.0087
LYS 410.0094
LEU 420.0102
THR 430.0111
GLN 440.0115
VAL 450.0113
PRO 460.0111
ASP 470.0118
ASP 480.0113
LEU 490.0108
PRO 500.0111
THR 510.0118
ASN 520.0114
ILE 530.0107
THR 540.0107
VAL 550.0099
LEU 560.0099
ASN 570.0092
LEU 580.0095
THR 590.0088
HIS 600.0086
ASN 610.0095
GLN 620.0103
LEU 630.0109
ARG 640.0117
ARG 650.0122
LEU 660.0122
PRO 670.0131
ALA 680.0135
ALA 690.0138
ASN 700.0129
PHE 710.0126
THR 720.0134
ARG 730.0129
TYR 740.0122
SER 750.0128
GLN 760.0121
LEU 770.0114
THR 780.0111
SER 790.0103
LEU 800.0104
ASP 810.0096
VAL 820.0099
GLY 830.0092
PHE 840.0090
ASN 850.0099
THR 860.0107
ILE 870.0113
SER 880.0119
LYS 890.0126
LEU 900.0124
GLU 910.0133
PRO 920.0136
GLU 930.0140
LEU 940.0131
CYS 950.0131
GLN 960.0140
LYS 970.0136
LEU 980.0128
PRO 990.0132
MET 1000.0124
LEU 1010.0117
LYS 1020.0111
VAL 1030.0103
LEU 1040.0105
ASN 1050.0097
LEU 1060.0101
GLN 1070.0092
HIS 1080.0092
ASN 1090.0101
GLU 1100.0109
LEU 1110.0112
SER 1120.0113
GLN 1130.0121
LEU 1140.0122
SER 1150.0130
ASP 1160.0134
LYS 1170.0138
THR 1180.0129
PHE 1190.0126
ALA 1200.0135
PHE 1210.0136
CYS 1220.0127
THR 1230.0129
ASN 1240.0123
LEU 1250.0114
THR 1260.0107
GLU 1270.0100
LEU 1280.0101
HIS 1290.0095
LEU 1300.0098
MET 1310.0089
SER 1320.0090
ASN 1330.0100
SER 1340.0101
ILE 1350.0106
GLN 1360.0107
LYS 1370.0112
ILE 1380.0115
LYS 1390.0124
ASN 1400.0130
ASN 1410.0128
PRO 1420.0125
PHE 1430.0120
VAL 1440.0127
LYS 1450.0130
GLN 1460.0121
LYS 1470.0123
ASN 1480.0117
LEU 1490.0110
ILE 1500.0102
THR 1510.0095
LEU 1520.0097
ASP 1530.0090
LEU 1540.0092
SER 1550.0084
HIS 1560.0083
ASN 1570.0092
GLY 1580.0095
LEU 1590.0097
SER 1600.0097
SER 1610.0099
THR 1620.0098
LYS 1630.0107
LEU 1640.0111
GLY 1650.0119
THR 1660.0125
GLN 1670.0126
VAL 1680.0122
GLN 1690.0120
LEU 1700.0114
GLU 1710.0115
ASN 1720.0110
LEU 1730.0103
GLN 1740.0095
GLU 1750.0088
LEU 1760.0089
LEU 1770.0083
LEU 1780.0085
SER 1790.0077
ASN 1800.0076
ASN 1810.0084
LYS 1820.0087
ILE 1830.0086
GLN 1840.0084
ALA 1850.0086
LEU 1860.0088
LYS 1870.0095
SER 1880.0099
GLU 1890.0107
GLU 1900.0104
LEU 1910.0101
ASP 1920.0109
ILE 1930.0112
PHE 1940.0106
ALA 1950.0110
ASN 1960.0113
SER 1970.0106
SER 1980.0099
LEU 1990.0092
LYS 2000.0085
LYS 2010.0080
LEU 2020.0080
GLU 2030.0075
LEU 2040.0075
SER 2050.0068
SER 2060.0067
ASN 2070.0074
GLN 2080.0072
ILE 2090.0075
LYS 2100.0074
GLU 2110.0077
PHE 2120.0079
SER 2130.0086
PRO 2140.0086
GLY 2150.0091
CYS 2160.0090
PHE 2170.0087
HIS 2180.0093
ALA 2190.0100
ILE 2200.0098
GLY 2210.0102
ARG 2220.0095
LEU 2230.0086
PHE 2240.0081
GLY 2250.0074
LEU 2260.0071
PHE 2270.0066
LEU 2280.0063
ASN 2290.0058
ASN 2300.0056
VAL 2310.0061
GLN 2320.0057
LEU 2330.0057
GLY 2340.0050
PRO 2350.0047
SER 2360.0053
LEU 2370.0059
THR 2380.0056
GLU 2390.0057
LYS 2400.0065
LEU 2410.0066
CYS 2420.0064
LEU 2430.0069
GLU 2440.0076
LEU 2450.0074
ALA 2460.0075
ASN 2470.0083
THR 2480.0084
SER 2490.0084
ILE 2500.0076
ARG 2510.0071
ASN 2520.0066
LEU 2530.0061
SER 2540.0056
LEU 2550.0052
SER 2560.0048
ASN 2570.0046
SER 2580.0050
GLN 2590.0045
LEU 2600.0041
SER 2610.0035
THR 2620.0034
THR 2630.0037
SER 2640.0038
ASN 2650.0042
THR 2660.0048
THR 2670.0048
PHE 2680.0053
LEU 2690.0057
GLY 2700.0064
LEU 2710.0064
LYS 2720.0065
TRP 2730.0073
THR 2740.0073
ASN 2750.0073
LEU 2760.0065
THR 2770.0063
MET 2780.0057
LEU 2790.0052
ASP 2800.0048
LEU 2810.0042
SER 2820.0038
TYR 2830.0037
ASN 2840.0037
ASN 2850.0031
LEU 2860.0030
ASN 2870.0025
VAL 2880.0025
VAL 2890.0029
GLY 2900.0031
ASN 2910.0033
ASP 2920.0041
SER 2930.0041
PHE 2940.0046
ALA 2950.0049
TRP 2960.0056
LEU 2970.0057
PRO 2980.0061
GLN 2990.0064
LEU 3000.0057
GLU 3010.0056
TYR 3020.0051
PHE 3030.0045
PHE 3040.0040
LEU 3050.0034
GLU 3060.0031
TYR 3070.0028
ASN 3080.0027
ASN 3090.0022
ILE 3100.0021
GLN 3110.0017
HIS 3120.0018
LEU 3130.0023
PHE 3140.0026
SER 3150.0032
HIS 3160.0035
SER 3170.0033
LEU 3180.0038
HIS 3190.0043
GLY 3200.0050
LEU 3210.0050
PHE 3220.0055
ASN 3230.0057
VAL 3240.0051
ARG 3250.0051
TYR 3260.0045
LEU 3270.0039
ASN 3280.0035
LEU 3290.0029
LYS 3300.0026
ARG 3310.0022
SER 3320.0024
PHE 3330.0019
THR 3340.0016
LYS 3350.0014
GLN 3360.0013
SER 3370.0017
ILE 3380.0020
SER 3390.0024
LEU 3400.0020
ALA 3410.0016
SER 3420.0013
LEU 3430.0012
PRO 3440.0014
LYS 3450.0017
ILE 3460.0022
ASP 3470.0026
ASP 3480.0031
PHE 3490.0037
SER 3500.0033
PHE 3510.0038
GLN 3520.0044
TRP 3530.0046
LEU 3540.0047
LYS 3550.0053
CYS 3560.0054
LEU 3570.0048
GLU 3580.0048
HIS 3590.0042
LEU 3600.0036
ASN 3610.0032
MET 3620.0026
GLU 3630.0023
ASP 3640.0018
ASN 3650.0016
ASP 3660.0014
ILE 3670.0018
PRO 3680.0019
GLY 3690.0024
ILE 3700.0029
LYS 3710.0031
SER 3720.0037
ASN 3730.0038
MET 3740.0033
PHE 3750.0037
THR 3760.0043
GLY 3770.0047
LEU 3780.0046
ILE 3790.0053
ASN 3800.0052
LEU 3810.0046
LYS 3820.0046
TYR 3830.0040
LEU 3840.0035
SER 3850.0030
LEU 3860.0027
SER 3870.0024
ASN 3880.0019
SER 3890.0020
PHE 3900.0019
THR 3910.0017
SER 3920.0020
LEU 3930.0024
ARG 3940.0027
THR 3950.0031
LEU 3960.0035
THR 3970.0038
ASN 3980.0042
GLU 3990.0040
THR 4000.0036
PHE 4010.0039
VAL 4020.0043
SER 4030.0041
LEU 4040.0042
ALA 4050.0047
HIS 4060.0051
SER 4070.0048
PRO 4080.0050
LEU 4090.0045
HIS 4100.0044
ILE 4110.0039
LEU 4120.0036
ASN 4130.0031
LEU 4140.0029
THR 4150.0026
LYS 4160.0022
ASN 4170.0023
LYS 4180.0023
ILE 4190.0027
SER 4200.0029
LYS 4210.0034
ILE 4220.0036
GLU 4230.0040
SER 4240.0044
ASP 4250.0045
ALA 4260.0042
PHE 4270.0043
SER 4280.0047
TRP 4290.0046
LEU 4300.0045
GLY 4310.0050
HIS 4320.0049
LEU 4330.0044
GLU 4340.0043
VAL 4350.0039
LEU 4360.0037
ASP 4370.0033
LEU 4380.0032
GLY 4390.0030
LEU 4400.0026
ASN 4410.0027
GLU 4420.0027
ILE 4430.0031
GLY 4440.0032
GLN 4450.0036
GLU 4460.0039
LEU 4470.0040
THR 4480.0044
GLY 4490.0044
GLN 4500.0045
GLU 4510.0042
TRP 4520.0044
ARG 4530.0047
GLY 4540.0048
LEU 4550.0046
GLU 4560.0048
ASN 4570.0047
ILE 4580.0044
PHE 4590.0043
GLU 4600.0040
ILE 4610.0038
TYR 4620.0035
LEU 4630.0035
SER 4640.0032
TYR 4650.0030
ASN 4660.0030
LYS 4670.0030
TYR 4680.0033
LEU 4690.0035
GLN 4700.0038
LEU 4710.0040
THR 4720.0042
ARG 4730.0044
ASN 4740.0044
SER 4750.0042
PHE 4760.0043
ALA 4770.0045
LEU 4780.0046
VAL 4790.0044
PRO 4800.0045
SER 4810.0045
LEU 4820.0042
GLN 4830.0041
ARG 4840.0039
LEU 4850.0039
MET 4860.0036
LEU 4870.0036
ARG 4880.0034
ARG 4890.0033
VAL 4900.0034
ALA 4910.0033
LEU 4920.0035
LYS 4930.0037
ASN 4940.0039
VAL 4950.0038
ASP 4960.0038
SER 4970.0040
SER 4980.0041
PRO 4990.0042
SER 5000.0041
PRO 5010.0040
PHE 5020.0040
GLN 5030.0041
PRO 5040.0042
LEU 5050.0041
ARG 5060.0040
ASN 5070.0040
LEU 5080.0040
THR 5090.0039
ILE 5100.0039
LEU 5110.0038
ASP 5120.0037
LEU 5130.0037
SER 5140.0036
ASN 5150.0035
ASN 5160.0036
ASN 5170.0036
ILE 5180.0036
ALA 5190.0036
ASN 5200.0036
ILE 5210.0037
ASN 5220.0037
ASP 5230.0038
ASP 5240.0038
MET 5250.0038
LEU 5260.0037
GLU 5270.0037
GLY 5280.0037
LEU 5290.0037
GLU 5300.0037
LYS 5310.0037
LEU 5320.0038
GLU 5330.0037
ILE 5340.0038
LEU 5350.0038
ASP 5360.0037
LEU 5370.0037
GLN 5380.0037
HIS 5390.0037
ASN 5400.0037
ASN 5410.0037
LEU 5420.0037
ALA 5430.0037
ARG 5440.0037
LEU 5450.0037
TRP 5460.0037
LYS 5470.0037
HIS 5480.0037
ALA 5490.0037
ASN 5500.0037
PRO 5510.0037
GLY 5520.0036
GLY 5530.0037
PRO 5540.0037
ILE 5550.0036
TYR 5560.0036
PHE 5570.0036
LEU 5580.0036
LYS 5590.0036
GLY 5600.0036
LEU 5610.0035
SER 5620.0034
HIS 5630.0035
LEU 5640.0037
HIS 5650.0038
ILE 5660.0038
LEU 5670.0038
ASN 5680.0038
LEU 5690.0038
GLU 5700.0039
SER 5710.0039
ASN 5720.0038
GLY 5730.0039
PHE 5740.0038
ASP 5750.0039
GLU 5760.0038
ILE 5770.0038
PRO 5780.0037
VAL 5790.0037
GLU 5800.0036
VAL 5810.0036
PHE 5820.0036
LYS 5830.0035
ASP 5840.0034
LEU 5850.0035
PHE 5860.0032
GLU 5870.0034
LEU 5880.0036
LYS 5890.0038
ILE 5900.0041
ILE 5910.0039
ASP 5920.0039
LEU 5930.0039
GLY 5940.0040
LEU 5950.0040
ASN 5960.0040
ASN 5970.0041
LEU 5980.0040
ASN 5990.0041
THR 6000.0041
LEU 6010.0040
PRO 6020.0039
ALA 6030.0039
SER 6040.0038
VAL 6050.0038
PHE 6060.0037
ASN 6070.0037
ASN 6080.0035
GLN 6090.0036
VAL 6100.0036
SER 6110.0037
LEU 6120.0038
LYS 6130.0039
SER 6140.0040
LEU 6150.0040
ASN 6160.0040
LEU 6170.0041
GLN 6180.0042
LYS 6190.0042
ASN 6200.0042
LEU 6210.0043
ILE 6220.0043
THR 6230.0044
SER 6240.0044
VAL 6250.0043
GLU 6260.0042
LYS 6270.0042
LYS 6280.0041
VAL 6290.0040
PHE 6300.0040
GLY 6310.0040
PRO 6320.0039
ALA 6330.0039
PHE 6340.0040
ARG 6350.0040
ASN 6360.0039
LEU 6370.0040
THR 6380.0041
GLU 6390.0041
LEU 6400.0042
ASP 6410.0042
MET 6420.0043
ARG 6430.0044
PHE 6440.0044
ASN 6450.0044
PRO 6460.0045
PHE 6470.0045
ASP 6480.0046
CYS 6490.0047
THR 6500.0048
CYS 6510.0047
GLU 6520.0046
SER 6530.0045
ILE 6540.0046
ALA 6550.0046
TRP 6560.0045
PHE 6570.0045
VAL 6580.0046
ASN 6590.0046
TRP 6600.0044
ILE 6610.0045
ASN 6620.0046
GLU 6630.0046
THR 6640.0045
HIS 6650.0044
THR 6660.0043
ASN 6670.0043
ILE 6680.0044
PRO 6690.0044
GLU 6700.0045
LEU 6710.0046
SER 6720.0047
SER 6730.0047
HIS 6740.0046
TYR 6750.0046
LEU 6760.0047
CYS 6770.0047
ASN 6780.0047
THR 6790.0047
PRO 6800.0049
PRO 6810.0050
HIS 6820.0051
TYR 6830.0050
HIS 6840.0049
GLY 6850.0049
PHE 6860.0049
PRO 6870.0048
VAL 6880.0047
ARG 6890.0047
LEU 6900.0049
PHE 6910.0049
ASP 6920.0049
THR 6930.0049
SER 6940.0050
SER 6950.0050
CYS 6960.0049
GLU 10.0023
ALA 20.0028
ALA 30.0027
ALA 40.0022
LYS 50.0026
MET 60.0030
GLN 70.0025
ARG 80.0023
LEU 90.0029
VAL 100.0029
LEU 110.0023
LEU 120.0027
LEU 130.0031
ALA 140.0027
ILE 150.0025
SER 160.0032
LEU 170.0032
LEU 180.0026
LEU 190.0029
TYR 200.0034
GLN 210.0031
ASP 220.0027
LEU 230.0033
PRO 240.0033
VAL 250.0038
ARG 260.0042
SER 270.0037
GLU 280.0044
PHE 290.0041
GLU 300.0033
LEU 310.0037
ASP 320.0045
ARG 330.0042
ILE 340.0042
CYS 350.0050
GLY 360.0056
TYR 370.0052
GLY 380.0043
THR 390.0046
ALA 400.0048
ARG 410.0046
CYS 420.0052
ARG 430.0056
LYS 440.0065
LYS 450.0067
CYS 460.0063
ARG 470.0056
SER 480.0059
GLN 490.0053
GLU 500.0057
TYR 510.0066
ARG 520.0070
ILE 530.0070
GLY 540.0072
ARG 550.0070
CYS 560.0062
PRO 570.0061
ASN 580.0063
THR 590.0071
TYR 600.0066
ALA 610.0067
CYS 620.0061
CYS 630.0057
LEU 640.0055
ARG 650.0051
LYS 660.0057
TRP 670.0056
ASP 680.0048
GLU 690.0053
SER 700.0045
LEU 710.0049
LEU 720.0060
ASN 730.0058
ARG 740.0054
THR 750.0063
LYS 760.0071
PRO 770.0075
GLU 780.0079
ALA 790.0087
ALA 800.0084
ALA 810.0070
LYS 820.0060
LYS 830.0038
GLU 840.0031
MET 850.0032
ASN 860.0040
LEU 870.0065
SER 880.0080
VAL 890.0109
GLY 900.0126
LEU 910.0152
GLY 920.0175
GLY 930.0181
GLY 940.0155
SER 950.0140
ASN 960.0111
LEU 970.0106
SER 980.0077
VAL 990.0078
GLY 1000.0059
LEU 1010.0071
GLY 1020.0079
GLU 1030.0090
ILE 1040.0118
GLY 1050.0134
GLY 1060.0154
GLY 1070.0151
SER 1080.0142
LYS 1090.0127
LEU 1100.0141
LEU 1110.0128
ASP 1120.0149
ILE 1130.0146
ASN 1140.0171
LEU 1150.0179
GLY 1160.0195
ARG 1170.0224
GLY 1180.0220
GLY 1190.0230
GLY 1200.0219
SER 1210.0189
MET 1220.0172
VAL 1230.0146
ASP 1240.0124
LEU 1250.0101
THR 1260.0076
PHE 1270.0053
GLY 1280.0032
GLY 1290.0022
VAL 1300.0022
GLY 1310.0037
GLY 1320.0042
GLY 1330.0032
SER 1340.0043
THR 1350.0045
PHE 1360.0069
THR 1370.0092
PHE 1380.0113
PHE 1390.0139
PRO 1400.0162
LEU 1410.0187
VAL 1420.0214
ILE 1430.0230
GLY 1440.0261
GLY 1450.0278
GLY 1460.0275
SER 1470.0252
ASP 1480.0227
ALA 1490.0208
MET 1500.0184
TYR 1510.0174
LEU 1520.0144
GLY 1530.0139
PHE 1540.0111
ALA 1550.0111
ALA 1560.0088
GLY 1570.0069
GLY 1580.0060
GLY 1590.0035
SER 1600.0024
ALA 1610.0016
GLY 1620.0027
GLY 1630.0045
GLU 1640.0056
ASN 1650.0074
HIS 1660.0100
VAL 1670.0122
ALA 1680.0147
PHE 1690.0170
GLY 1700.0195
PRO 1710.0225
GLY 1720.0232
PRO 1730.0233
GLY 1740.0205
VAL 1750.0177
ASP 1760.0158
LEU 1770.0131
THR 1780.0115
PHE 1790.0088
GLY 1800.0081
GLY 1810.0111
VAL 1820.0117
GLN 1830.0139
PHE 1840.0145
ALA 1850.0175
MET 1860.0187
VAL 1870.0215
ASN 1880.0239
ASN 1890.0249
GLY 1900.0277
PRO 1910.0320
GLY 1920.0363
PRO 1930.0410
GLY 1940.0441
GLU 1950.0403
SER 1960.0413
PHE 1970.0380
THR 1980.0401
ALA 1990.0375
GLN 2000.0371
PRO 2010.0365
ALA 2020.0345
ASP 2030.0297
MET 2040.0281
GLN 2050.0268
ALA 2060.0211
GLY 2070.0173
ILE 2080.0135
LYS 2090.0086
GLY 2100.0075
PRO 2110.0042
GLY 2120.0038
PRO 2130.0029
GLY 2140.0009
GLY 2150.0026
SER 2160.0070
ILE 2170.0095
GLN 2180.0136
VAL 2190.0164
ILE 2200.0203
ASN 2210.0240
GLY 2220.0256
SER 2230.0292
THR 2240.0306
ILE 2250.0325
GLY 2260.0359
THR 2270.0370
GLY 2280.0375
SER 2290.0364
LYS 2300.0349
LYS 2310.0319
THR 2320.0308
ILE 2330.0280
LEU 2340.0271
ILE 2350.0241
TYR 2360.0223
SER 2370.0210
ILE 2380.0186
ILE 2390.0202
GLY 2400.0177
VAL 2410.0147
LYS 2420.0160
LYS 2430.0128
GLY 2440.0127
THR 2450.0165
LEU 2460.0180
ALA 2470.0213
TRP 2480.0236
ALA 2490.0261
ARG 2500.0284
THR 2510.0295
GLY 2520.0323
PHE 2530.0318
SER 2540.0345
PRO 2550.0344
ALA 2560.0343
LYS 2570.0356
LYS 2580.0340
LEU 2590.0319
ASN 2600.0310
ALA 2610.0282
GLY 2620.0279
VAL 2630.0254
VAL 2640.0241
ARG 2650.0240
VAL 2660.0215
PHE 2670.0221
PHE 2680.0197
LEU 2690.0222
ASN 2700.0212
GLN 2710.0237
LYS 2720.0250
LYS 2730.0259
ALA 2740.0274
LYS 2750.0306
ASP 2760.0320
VAL 2770.0309
LEU 2780.0330
ARG 2790.0367
LYS 2800.0361
THR 2810.0351
SER 2820.0363
ARG 2830.0327
PRO 2840.0327
MET 2850.0308
VAL 2860.0277
ASP 2870.0282
LEU 2880.0270
THR 2890.0277
PHE 2900.0253
GLY 2910.0254
GLY 2920.0268

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.