CNRS Nantes University US2B US2B
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***  TLR_3_simulation  ***

<R2> analysis for 2608260325273940753

---  normal mode 72  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0458
THR 260.0056
LYS 270.0061
CYS 280.0059
THR 290.0084
VAL 300.0107
SER 310.0147
HIS 320.0160
GLU 330.0123
VAL 340.0108
ALA 350.0077
ASP 360.0067
CYS 370.0043
SER 380.0037
HIS 390.0023
LEU 400.0014
LYS 410.0021
LEU 420.0031
THR 430.0048
GLN 440.0052
VAL 450.0039
PRO 460.0048
ASP 470.0067
ASP 480.0080
LEU 490.0057
PRO 500.0059
THR 510.0048
ASN 520.0047
ILE 530.0042
THR 540.0055
VAL 550.0065
LEU 560.0040
ASN 570.0040
LEU 580.0029
THR 590.0036
HIS 600.0032
ASN 610.0023
GLN 620.0035
LEU 630.0043
ARG 640.0061
ARG 650.0065
LEU 660.0068
PRO 670.0084
ALA 680.0091
ALA 690.0093
ASN 700.0070
PHE 710.0065
THR 720.0082
ARG 730.0061
TYR 740.0035
SER 750.0051
GLN 760.0039
LEU 770.0046
THR 780.0067
SER 790.0066
LEU 800.0056
ASP 810.0040
VAL 820.0041
GLY 830.0048
PHE 840.0046
ASN 850.0045
THR 860.0050
ILE 870.0061
SER 880.0073
LYS 890.0082
LEU 900.0082
GLU 910.0091
PRO 920.0104
GLU 930.0104
LEU 940.0088
CYS 950.0097
GLN 960.0112
LYS 970.0094
LEU 980.0083
PRO 990.0099
MET 1000.0089
LEU 1010.0086
LYS 1020.0090
VAL 1030.0082
LEU 1040.0077
ASN 1050.0070
LEU 1060.0069
GLN 1070.0067
HIS 1080.0064
ASN 1090.0063
GLU 1100.0065
LEU 1110.0073
SER 1120.0069
GLN 1130.0070
LEU 1140.0073
SER 1150.0074
ASP 1160.0085
LYS 1170.0085
THR 1180.0082
PHE 1190.0088
ALA 1200.0093
PHE 1210.0101
CYS 1220.0094
THR 1230.0104
ASN 1240.0096
LEU 1250.0090
THR 1260.0086
GLU 1270.0081
LEU 1280.0076
HIS 1290.0072
LEU 1300.0067
MET 1310.0070
SER 1320.0066
ASN 1330.0066
SER 1340.0064
ILE 1350.0066
GLN 1360.0058
LYS 1370.0060
ILE 1380.0064
LYS 1390.0063
ASN 1400.0066
ASN 1410.0067
PRO 1420.0071
PHE 1430.0077
VAL 1440.0078
LYS 1450.0083
GLN 1460.0074
LYS 1470.0077
ASN 1480.0080
LEU 1490.0077
ILE 1500.0079
THR 1510.0068
LEU 1520.0062
ASP 1530.0062
LEU 1540.0056
SER 1550.0058
HIS 1560.0063
ASN 1570.0058
GLY 1580.0054
LEU 1590.0054
SER 1600.0052
SER 1610.0057
THR 1620.0062
LYS 1630.0058
LEU 1640.0058
GLY 1650.0055
THR 1660.0052
GLN 1670.0049
VAL 1680.0049
GLN 1690.0054
LEU 1700.0059
GLU 1710.0054
ASN 1720.0057
LEU 1730.0052
GLN 1740.0057
GLU 1750.0052
LEU 1760.0050
LEU 1770.0053
LEU 1780.0050
SER 1790.0054
ASN 1800.0055
ASN 1810.0060
LYS 1820.0057
ILE 1830.0053
GLN 1840.0052
ALA 1850.0048
LEU 1860.0049
LYS 1870.0047
SER 1880.0043
GLU 1890.0047
GLU 1900.0050
LEU 1910.0048
ASP 1920.0046
ILE 1930.0047
PHE 1940.0048
ALA 1950.0046
ASN 1960.0043
SER 1970.0040
SER 1980.0034
LEU 1990.0034
LYS 2000.0030
LYS 2010.0039
LEU 2020.0038
GLU 2030.0042
LEU 2040.0042
SER 2050.0046
SER 2060.0055
ASN 2070.0054
GLN 2080.0053
ILE 2090.0047
LYS 2100.0046
GLU 2110.0040
PHE 2120.0033
SER 2130.0038
PRO 2140.0030
GLY 2150.0026
CYS 2160.0030
PHE 2170.0026
HIS 2180.0024
ALA 2190.0030
ILE 2200.0030
GLY 2210.0028
ARG 2220.0022
LEU 2230.0021
PHE 2240.0027
GLY 2250.0028
LEU 2260.0024
PHE 2270.0031
LEU 2280.0027
ASN 2290.0033
ASN 2300.0035
VAL 2310.0034
GLN 2320.0034
LEU 2330.0025
GLY 2340.0030
PRO 2350.0035
SER 2360.0045
LEU 2370.0029
THR 2380.0024
GLU 2390.0038
LYS 2400.0029
LEU 2410.0019
CYS 2420.0033
LEU 2430.0034
GLU 2440.0018
LEU 2450.0030
ALA 2460.0041
ASN 2470.0050
THR 2480.0041
SER 2490.0048
ILE 2500.0036
ARG 2510.0064
ASN 2520.0057
LEU 2530.0041
SER 2540.0037
LEU 2550.0022
SER 2560.0041
ASN 2570.0032
SER 2580.0024
GLN 2590.0022
LEU 2600.0027
SER 2610.0039
THR 2620.0054
THR 2630.0068
SER 2640.0081
ASN 2650.0096
THR 2660.0088
THR 2670.0075
PHE 2680.0080
LEU 2690.0091
GLY 2700.0086
LEU 2710.0083
LYS 2720.0100
TRP 2730.0100
THR 2740.0092
ASN 2750.0101
LEU 2760.0090
THR 2770.0097
MET 2780.0087
LEU 2790.0076
ASP 2800.0067
LEU 2810.0065
SER 2820.0064
TYR 2830.0054
ASN 2840.0044
ASN 2850.0041
LEU 2860.0054
ASN 2870.0051
VAL 2880.0067
VAL 2890.0081
GLY 2900.0094
ASN 2910.0103
ASP 2920.0107
SER 2930.0107
PHE 2940.0103
ALA 2950.0111
TRP 2960.0112
LEU 2970.0109
PRO 2980.0121
GLN 2990.0120
LEU 3000.0105
GLU 3010.0098
TYR 3020.0093
PHE 3030.0090
PHE 3040.0085
LEU 3050.0082
GLU 3060.0083
TYR 3070.0071
ASN 3080.0069
ASN 3090.0065
ILE 3100.0074
GLN 3110.0070
HIS 3120.0078
LEU 3130.0082
PHE 3140.0096
SER 3150.0104
HIS 3160.0104
SER 3170.0102
LEU 3180.0094
HIS 3190.0103
GLY 3200.0107
LEU 3210.0101
PHE 3220.0097
ASN 3230.0097
VAL 3240.0089
ARG 3250.0080
TYR 3260.0079
LEU 3270.0079
ASN 3280.0082
LEU 3290.0084
LYS 3300.0082
ARG 3310.0079
SER 3320.0082
PHE 3330.0080
THR 3340.0072
LYS 3350.0067
GLN 3360.0119
SER 3370.0119
ILE 3380.0203
SER 3390.0231
LEU 3400.0205
ALA 3410.0136
SER 3420.0098
LEU 3430.0093
PRO 3440.0082
LYS 3450.0085
ILE 3460.0090
ASP 3470.0104
ASP 3480.0099
PHE 3490.0086
SER 3500.0084
PHE 3510.0070
GLN 3520.0071
TRP 3530.0081
LEU 3540.0067
LYS 3550.0053
CYS 3560.0054
LEU 3570.0054
GLU 3580.0050
HIS 3590.0061
LEU 3600.0053
ASN 3610.0068
MET 3620.0071
GLU 3630.0075
ASP 3640.0087
ASN 3650.0095
ASP 3660.0109
ILE 3670.0092
PRO 3680.0097
GLY 3690.0079
ILE 3700.0072
LYS 3710.0102
SER 3720.0109
ASN 3730.0098
MET 3740.0077
PHE 3750.0052
THR 3760.0071
GLY 3770.0059
LEU 3780.0034
ILE 3790.0043
ASN 3800.0044
LEU 3810.0054
LYS 3820.0082
TYR 3830.0076
LEU 3840.0048
SER 3850.0054
LEU 3860.0053
SER 3870.0066
ASN 3880.0077
SER 3890.0074
PHE 3900.0077
THR 3910.0117
SER 3920.0097
LEU 3930.0073
ARG 3940.0082
THR 3950.0101
LEU 3960.0107
THR 3970.0146
ASN 3980.0169
GLU 3990.0154
THR 4000.0112
PHE 4010.0102
VAL 4020.0127
SER 4030.0098
LEU 4040.0090
ALA 4050.0127
HIS 4060.0126
SER 4070.0103
PRO 4080.0127
LEU 4090.0111
HIS 4100.0132
ILE 4110.0115
LEU 4120.0083
ASN 4130.0070
LEU 4140.0050
THR 4150.0056
LYS 4160.0064
ASN 4170.0057
LYS 4180.0064
ILE 4190.0057
SER 4200.0074
LYS 4210.0098
ILE 4220.0108
GLU 4230.0142
SER 4240.0169
ASP 4250.0172
ALA 4260.0145
PHE 4270.0142
SER 4280.0178
TRP 4290.0162
LEU 4300.0150
GLY 4310.0184
HIS 4320.0179
LEU 4330.0156
GLU 4340.0167
VAL 4350.0143
LEU 4360.0113
ASP 4370.0090
LEU 4380.0068
GLY 4390.0066
LEU 4400.0061
ASN 4410.0045
GLU 4420.0047
ILE 4430.0051
GLY 4440.0061
GLN 4450.0083
GLU 4460.0079
LEU 4470.0099
THR 4480.0125
GLY 4490.0141
GLN 4500.0157
GLU 4510.0140
TRP 4520.0150
ARG 4530.0179
GLY 4540.0188
LEU 4550.0173
GLU 4560.0185
ASN 4570.0185
ILE 4580.0160
PHE 4590.0165
GLU 4600.0141
ILE 4610.0109
TYR 4620.0091
LEU 4630.0070
SER 4640.0067
TYR 4650.0054
ASN 4660.0045
LYS 4670.0040
TYR 4680.0044
LEU 4690.0056
GLN 4700.0067
LEU 4710.0079
THR 4720.0087
ARG 4730.0104
ASN 4740.0119
SER 4750.0113
PHE 4760.0117
ALA 4770.0134
LEU 4780.0136
VAL 4790.0133
PRO 4800.0145
SER 4810.0131
LEU 4820.0119
GLN 4830.0125
ARG 4840.0115
LEU 4850.0095
MET 4860.0071
LEU 4870.0061
ARG 4880.0058
ARG 4890.0047
VAL 4900.0041
ALA 4910.0040
LEU 4920.0051
LYS 4930.0054
ASN 4940.0065
VAL 4950.0073
ASP 4960.0072
SER 4970.0075
SER 4980.0085
PRO 4990.0097
SER 5000.0093
PRO 5010.0088
PHE 5020.0093
GLN 5030.0090
PRO 5040.0093
LEU 5050.0099
ARG 5060.0064
ASN 5070.0075
LEU 5080.0077
THR 5090.0085
ILE 5100.0089
LEU 5110.0062
ASP 5120.0051
LEU 5130.0047
SER 5140.0042
ASN 5150.0034
ASN 5160.0037
ASN 5170.0046
ILE 5180.0053
ALA 5190.0064
ASN 5200.0070
ILE 5210.0068
ASN 5220.0078
ASP 5230.0092
ASP 5240.0094
MET 5250.0085
LEU 5260.0075
GLU 5270.0070
GLY 5280.0065
LEU 5290.0064
GLU 5300.0062
LYS 5310.0065
LEU 5320.0058
GLU 5330.0065
ILE 5340.0059
LEU 5350.0048
ASP 5360.0017
LEU 5370.0023
GLN 5380.0022
HIS 5390.0034
ASN 5400.0038
ASN 5410.0057
LEU 5420.0059
ALA 5430.0075
ARG 5440.0095
LEU 5450.0090
TRP 5460.0084
LYS 5470.0112
HIS 5480.0134
ALA 5490.0158
ASN 5500.0145
PRO 5510.0179
GLY 5520.0180
GLY 5530.0157
PRO 5540.0118
ILE 5550.0099
TYR 5560.0082
PHE 5570.0071
LEU 5580.0067
LYS 5590.0085
GLY 5600.0096
LEU 5610.0071
SER 5620.0081
HIS 5630.0081
LEU 5640.0062
HIS 5650.0062
ILE 5660.0042
LEU 5670.0022
ASN 5680.0022
LEU 5690.0021
GLU 5700.0045
SER 5710.0054
ASN 5720.0050
GLY 5730.0066
PHE 5740.0059
ASP 5750.0071
GLU 5760.0071
ILE 5770.0050
PRO 5780.0065
VAL 5790.0063
GLU 5800.0069
VAL 5810.0046
PHE 5820.0038
LYS 5830.0064
ASP 5840.0074
LEU 5850.0057
PHE 5860.0059
GLU 5870.0066
LEU 5880.0048
LYS 5890.0056
ILE 5900.0055
ILE 5910.0036
ASP 5920.0052
LEU 5930.0054
GLY 5940.0074
LEU 5950.0089
ASN 5960.0084
ASN 5970.0085
LEU 5980.0078
ASN 5990.0074
THR 6000.0076
LEU 6010.0050
PRO 6020.0041
ALA 6030.0034
SER 6040.0021
VAL 6050.0022
PHE 6060.0016
ASN 6070.0014
ASN 6080.0020
GLN 6090.0025
VAL 6100.0031
SER 6110.0039
LEU 6120.0041
LYS 6130.0066
SER 6140.0078
LEU 6150.0075
ASN 6160.0088
LEU 6170.0092
GLN 6180.0099
LYS 6190.0109
ASN 6200.0108
LEU 6210.0111
ILE 6220.0122
THR 6230.0123
SER 6240.0147
VAL 6250.0144
GLU 6260.0092
LYS 6270.0099
LYS 6280.0101
VAL 6290.0094
PHE 6300.0093
GLY 6310.0076
PRO 6320.0066
ALA 6330.0077
PHE 6340.0087
ARG 6350.0078
ASN 6360.0071
LEU 6370.0080
THR 6380.0086
GLU 6390.0093
LEU 6400.0094
ASP 6410.0097
MET 6420.0100
ARG 6430.0093
PHE 6440.0100
ASN 6450.0111
PRO 6460.0133
PHE 6470.0139
ASP 6480.0182
CYS 6490.0179
THR 6500.0223
CYS 6510.0207
GLU 6520.0234
SER 6530.0199
ILE 6540.0151
ALA 6550.0152
TRP 6560.0119
PHE 6570.0109
VAL 6580.0092
ASN 6590.0093
TRP 6600.0101
ILE 6610.0092
ASN 6620.0083
GLU 6630.0101
THR 6640.0113
HIS 6650.0123
THR 6660.0103
ASN 6670.0090
ILE 6680.0077
PRO 6690.0063
GLU 6700.0048
LEU 6710.0037
SER 6720.0039
SER 6730.0040
HIS 6740.0058
TYR 6750.0078
LEU 6760.0101
CYS 6770.0159
ASN 6780.0198
THR 6790.0254
PRO 6800.0286
PRO 6810.0328
HIS 6820.0323
TYR 6830.0248
HIS 6840.0239
GLY 6850.0182
PHE 6860.0176
PRO 6870.0119
VAL 6880.0112
ARG 6890.0077
LEU 6900.0126
PHE 6910.0132
ASP 6920.0175
THR 6930.0178
SER 6940.0221
SER 6950.0286
CYS 6960.0289
GLU 10.0458
ALA 20.0357
ALA 30.0241
ALA 40.0230
LYS 50.0188
MET 60.0088
GLN 70.0044
ARG 80.0019
LEU 90.0063
VAL 100.0052
LEU 110.0038
LEU 120.0046
LEU 130.0060
ALA 140.0063
ILE 150.0071
SER 160.0086
LEU 170.0102
LEU 180.0102
LEU 190.0130
TYR 200.0186
GLN 210.0256
ASP 220.0272
LEU 230.0321
PRO 240.0408
VAL 250.0398
ARG 260.0111
SER 270.0111
GLU 280.0126
PHE 290.0222
GLU 300.0149
LEU 310.0120
ASP 320.0133
ARG 330.0134
ILE 340.0118
CYS 350.0118
GLY 360.0196
TYR 370.0293
GLY 380.0253
THR 390.0169
ALA 400.0068
ARG 410.0069
CYS 420.0073
ARG 430.0037
LYS 440.0017
LYS 450.0031
CYS 460.0074
ARG 470.0120
SER 480.0184
GLN 490.0168
GLU 500.0109
TYR 510.0122
ARG 520.0104
ILE 530.0129
GLY 540.0133
ARG 550.0117
CYS 560.0117
PRO 570.0155
ASN 580.0123
THR 590.0100
TYR 600.0059
ALA 610.0068
CYS 620.0071
CYS 630.0033
LEU 640.0045
ARG 650.0084
LYS 660.0196
TRP 670.0195
ASP 680.0174
GLU 690.0161
SER 700.0157
LEU 710.0161
LEU 720.0140
ASN 730.0109
ARG 740.0120
THR 750.0118
LYS 760.0137
PRO 770.0085
GLU 780.0147
ALA 790.0148
ALA 800.0109
ALA 810.0184
LYS 820.0161
LYS 830.0112
GLU 840.0138
MET 850.0078
ASN 860.0093
LEU 870.0056
SER 880.0075
VAL 890.0051
GLY 900.0075
LEU 910.0091
GLY 920.0161
GLY 930.0282
GLY 940.0290
SER 950.0232
ASN 960.0146
LEU 970.0131
SER 980.0132
VAL 990.0123
GLY 1000.0134
LEU 1010.0124
GLY 1020.0154
GLU 1030.0181
ILE 1040.0194
GLY 1050.0221
GLY 1060.0176
GLY 1070.0141
SER 1080.0114
LYS 1090.0079
LEU 1100.0053
LEU 1110.0047
ASP 1120.0034
ILE 1130.0026
ASN 1140.0024
LEU 1150.0029
GLY 1160.0168
ARG 1170.0275
GLY 1180.0233
GLY 1190.0148
GLY 1200.0053
SER 1210.0028
MET 1220.0027
VAL 1230.0037
ASP 1240.0058
LEU 1250.0074
THR 1260.0107
PHE 1270.0125
GLY 1280.0140
GLY 1290.0171
VAL 1300.0180
GLY 1310.0192
GLY 1320.0184
GLY 1330.0156
SER 1340.0156
THR 1350.0129
PHE 1360.0115
THR 1370.0103
PHE 1380.0074
PHE 1390.0077
PRO 1400.0056
LEU 1410.0103
VAL 1420.0105
ILE 1430.0115
GLY 1440.0136
GLY 1450.0135
GLY 1460.0105
SER 1470.0096
ASP 1480.0074
ALA 1490.0100
MET 1500.0101
TYR 1510.0104
LEU 1520.0106
GLY 1530.0121
PHE 1540.0124
ALA 1550.0135
ALA 1560.0178
GLY 1570.0146
GLY 1580.0124
GLY 1590.0105
SER 1600.0106
ALA 1610.0127
GLY 1620.0134
GLY 1630.0125
GLU 1640.0125
ASN 1650.0108
HIS 1660.0092
VAL 1670.0081
ALA 1680.0078
PHE 1690.0075
GLY 1700.0080
PRO 1710.0159
GLY 1720.0178
PRO 1730.0180
GLY 1740.0124
VAL 1750.0070
ASP 1760.0094
LEU 1770.0045
THR 1780.0068
PHE 1790.0034
GLY 1800.0051
GLY 1810.0185
VAL 1820.0200
GLN 1830.0206
PHE 1840.0199
ALA 1850.0240
MET 1860.0157
VAL 1870.0154
ASN 1880.0107
ASN 1890.0102
GLY 1900.0199
PRO 1910.0279
GLY 1920.0258
PRO 1930.0165
GLY 1940.0173
GLU 1950.0178
SER 1960.0193
PHE 1970.0175
THR 1980.0098
ALA 1990.0070
GLN 2000.0055
PRO 2010.0085
ALA 2020.0131
ASP 2030.0102
MET 2040.0240
GLN 2050.0303
ALA 2060.0286
GLY 2070.0273
ILE 2080.0277
LYS 2090.0281
GLY 2100.0349
PRO 2110.0294
GLY 2120.0213
PRO 2130.0162
GLY 2140.0273
GLY 2150.0355
SER 2160.0176
ILE 2170.0249
GLN 2180.0066
VAL 2190.0131
ILE 2200.0046
ASN 2210.0215
GLY 2220.0179
SER 2230.0206
THR 2240.0229
ILE 2250.0194
GLY 2260.0175
THR 2270.0130
GLY 2280.0108
SER 2290.0082
LYS 2300.0066
LYS 2310.0083
THR 2320.0085
ILE 2330.0110
LEU 2340.0120
ILE 2350.0146
TYR 2360.0081
SER 2370.0076
ILE 2380.0052
ILE 2390.0080
GLY 2400.0098
VAL 2410.0100
LYS 2420.0149
LYS 2430.0085
GLY 2440.0154
THR 2450.0224
LEU 2460.0131
ALA 2470.0083
TRP 2480.0037
ALA 2490.0092
ARG 2500.0141
THR 2510.0190
GLY 2520.0189
PHE 2530.0117
SER 2540.0109
PRO 2550.0079
ALA 2560.0130
LYS 2570.0164
LYS 2580.0123
LEU 2590.0042
ASN 2600.0044
ALA 2610.0100
GLY 2620.0072
VAL 2630.0054
VAL 2640.0065
ARG 2650.0040
VAL 2660.0057
PHE 2670.0040
PHE 2680.0080
LEU 2690.0082
ASN 2700.0082
GLN 2710.0092
LYS 2720.0080
LYS 2730.0097
ALA 2740.0119
LYS 2750.0122
ASP 2760.0091
VAL 2770.0101
LEU 2780.0178
ARG 2790.0151
LYS 2800.0055
THR 2810.0073
SER 2820.0020
ARG 2830.0036
PRO 2840.0043
MET 2850.0045
VAL 2860.0091
ASP 2870.0081
LEU 2880.0064
THR 2890.0066
PHE 2900.0058
GLY 2910.0080
GLY 2920.0107

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.