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***  TLR_3_simulation  ***

<R2> analysis for 2608260325273940753

---  normal mode 8  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.1574
THR 260.0054
LYS 270.0055
CYS 280.0053
THR 290.0055
VAL 300.0058
SER 310.0059
HIS 320.0062
GLU 330.0061
VAL 340.0054
ALA 350.0052
ASP 360.0046
CYS 370.0044
SER 380.0038
HIS 390.0036
LEU 400.0041
LYS 410.0037
LEU 420.0039
THR 430.0035
GLN 440.0040
VAL 450.0043
PRO 460.0051
ASP 470.0057
ASP 480.0062
LEU 490.0061
PRO 500.0066
THR 510.0067
ASN 520.0068
ILE 530.0061
THR 540.0058
VAL 550.0050
LEU 560.0046
ASN 570.0040
LEU 580.0037
THR 590.0030
HIS 600.0027
ASN 610.0030
GLN 620.0028
LEU 630.0028
ARG 640.0023
ARG 650.0026
LEU 660.0033
PRO 670.0037
ALA 680.0043
ALA 690.0048
ASN 700.0048
PHE 710.0050
THR 720.0057
ARG 730.0061
TYR 740.0058
SER 750.0061
GLN 760.0063
LEU 770.0055
THR 780.0054
SER 790.0047
LEU 800.0041
ASP 810.0035
VAL 820.0030
GLY 830.0024
PHE 840.0019
ASN 850.0020
THR 860.0016
ILE 870.0018
SER 880.0014
LYS 890.0020
LEU 900.0028
GLU 910.0033
PRO 920.0039
GLU 930.0044
LEU 940.0044
CYS 950.0047
GLN 960.0053
LYS 970.0054
LEU 980.0054
PRO 990.0059
MET 1000.0060
LEU 1010.0052
LYS 1020.0051
VAL 1030.0044
LEU 1040.0038
ASN 1050.0031
LEU 1060.0025
GLN 1070.0020
HIS 1080.0013
ASN 1090.0013
GLU 1100.0009
LEU 1110.0016
SER 1120.0016
GLN 1130.0021
LEU 1140.0028
SER 1150.0033
ASP 1160.0040
LYS 1170.0039
THR 1180.0035
PHE 1190.0041
ALA 1200.0047
PHE 1210.0050
CYS 1220.0050
THR 1230.0056
ASN 1240.0057
LEU 1250.0050
THR 1260.0051
GLU 1270.0043
LEU 1280.0037
HIS 1290.0030
LEU 1300.0025
MET 1310.0019
SER 1320.0012
ASN 1330.0014
SER 1340.0013
ILE 1350.0020
GLN 1360.0025
LYS 1370.0031
ILE 1380.0035
LYS 1390.0038
ASN 1400.0044
ASN 1410.0047
PRO 1420.0042
PHE 1430.0046
VAL 1440.0053
LYS 1450.0054
GLN 1460.0053
LYS 1470.0060
ASN 1480.0059
LEU 1490.0052
ILE 1500.0051
THR 1510.0044
LEU 1520.0039
ASP 1530.0032
LEU 1540.0028
SER 1550.0023
HIS 1560.0017
ASN 1570.0020
GLY 1580.0024
LEU 1590.0030
SER 1600.0037
SER 1610.0042
THR 1620.0044
LYS 1630.0047
LEU 1640.0045
GLY 1650.0050
THR 1660.0057
GLN 1670.0062
VAL 1680.0064
GLN 1690.0059
LEU 1700.0056
GLU 1710.0063
ASN 1720.0061
LEU 1730.0054
GLN 1740.0052
GLU 1750.0045
LEU 1760.0041
LEU 1770.0034
LEU 1780.0033
SER 1790.0028
ASN 1800.0023
ASN 1810.0027
LYS 1820.0032
ILE 1830.0038
GLN 1840.0044
ALA 1850.0050
LEU 1860.0052
LYS 1870.0058
SER 1880.0063
GLU 1890.0062
GLU 1900.0055
LEU 1910.0056
ASP 1920.0063
ILE 1930.0060
PHE 1940.0060
ALA 1950.0067
ASN 1960.0069
SER 1970.0063
SER 1980.0062
LEU 1990.0055
LYS 2000.0052
LYS 2010.0045
LEU 2020.0044
GLU 2030.0037
LEU 2040.0037
SER 2050.0031
SER 2060.0028
ASN 2070.0034
GLN 2080.0039
ILE 2090.0045
LYS 2100.0051
GLU 2110.0056
PHE 2120.0058
SER 2130.0064
PRO 2140.0070
GLY 2150.0070
CYS 2160.0063
PHE 2170.0061
HIS 2180.0068
ALA 2190.0066
ILE 2200.0063
GLY 2210.0068
ARG 2220.0065
LEU 2230.0058
PHE 2240.0056
GLY 2250.0049
LEU 2260.0046
PHE 2270.0039
LEU 2280.0039
ASN 2290.0032
ASN 2300.0030
VAL 2310.0037
GLN 2320.0041
LEU 2330.0047
GLY 2340.0050
PRO 2350.0055
SER 2360.0061
LEU 2370.0057
THR 2380.0055
GLU 2390.0062
LYS 2400.0063
LEU 2410.0058
CYS 2420.0061
LEU 2430.0068
GLU 2440.0065
LEU 2450.0063
ALA 2460.0070
ASN 2470.0073
THR 2480.0068
SER 2490.0065
ILE 2500.0059
ARG 2510.0055
ASN 2520.0048
LEU 2530.0046
SER 2540.0039
LEU 2550.0039
SER 2560.0033
ASN 2570.0032
SER 2580.0039
GLN 2590.0041
LEU 2600.0045
SER 2610.0047
THR 2620.0051
THR 2630.0054
SER 2640.0060
ASN 2650.0065
THR 2660.0067
THR 2670.0061
PHE 2680.0060
LEU 2690.0068
GLY 2700.0068
LEU 2710.0064
LYS 2720.0070
TRP 2730.0072
THR 2740.0067
ASN 2750.0064
LEU 2760.0057
THR 2770.0053
MET 2780.0046
LEU 2790.0044
ASP 2800.0038
LEU 2810.0038
SER 2820.0031
TYR 2830.0029
ASN 2840.0036
ASN 2850.0037
LEU 2860.0041
ASN 2870.0044
VAL 2880.0050
VAL 2890.0050
GLY 2900.0057
ASN 2910.0060
ASP 2920.0062
SER 2930.0058
PHE 2940.0056
ALA 2950.0062
TRP 2960.0065
LEU 2970.0060
PRO 2980.0062
GLN 2990.0060
LEU 3000.0053
GLU 3010.0049
TYR 3020.0043
PHE 3030.0041
PHE 3040.0035
LEU 3050.0034
GLU 3060.0028
TYR 3070.0026
ASN 3080.0032
ASN 3090.0035
ILE 3100.0039
GLN 3110.0043
HIS 3120.0045
LEU 3130.0044
PHE 3140.0050
SER 3150.0052
HIS 3160.0056
SER 3170.0052
LEU 3180.0050
HIS 3190.0057
GLY 3200.0059
LEU 3210.0054
PHE 3220.0056
ASN 3230.0054
VAL 3240.0048
ARG 3250.0044
TYR 3260.0038
LEU 3270.0036
ASN 3280.0030
LEU 3290.0029
LYS 3300.0023
ARG 3310.0023
SER 3320.0030
PHE 3330.0032
THR 3340.0034
LYS 3350.0031
GLN 3360.0033
SER 3370.0039
ILE 3380.0040
SER 3390.0046
LEU 3400.0048
ALA 3410.0043
SER 3420.0043
LEU 3430.0038
PRO 3440.0037
LYS 3450.0041
ILE 3460.0040
ASP 3470.0045
ASP 3480.0045
PHE 3490.0047
SER 3500.0046
PHE 3510.0043
GLN 3520.0048
TRP 3530.0052
LEU 3540.0048
LYS 3550.0050
CYS 3560.0049
LEU 3570.0043
GLU 3580.0039
HIS 3590.0034
LEU 3600.0031
ASN 3610.0025
MET 3620.0024
GLU 3630.0019
ASP 3640.0017
ASN 3650.0023
ASP 3660.0026
ILE 3670.0028
PRO 3680.0029
GLY 3690.0027
ILE 3700.0028
LYS 3710.0034
SER 3720.0035
ASN 3730.0039
MET 3740.0037
PHE 3750.0036
THR 3760.0041
GLY 3770.0045
LEU 3780.0042
ILE 3790.0045
ASN 3800.0044
LEU 3810.0037
LYS 3820.0034
TYR 3830.0029
LEU 3840.0026
SER 3850.0021
LEU 3860.0018
SER 3870.0013
ASN 3880.0014
SER 3890.0019
PHE 3900.0020
THR 3910.0023
SER 3920.0020
LEU 3930.0018
ARG 3940.0015
THR 3950.0015
LEU 3960.0015
THR 3970.0017
ASN 3980.0019
GLU 3990.0024
THR 4000.0023
PHE 4010.0025
VAL 4020.0029
SER 4030.0033
LEU 4040.0031
ALA 4050.0033
HIS 4060.0038
SER 4070.0036
PRO 4080.0036
LEU 4090.0031
HIS 4100.0030
ILE 4110.0025
LEU 4120.0020
ASN 4130.0016
LEU 4140.0013
THR 4150.0009
LYS 4160.0009
ASN 4170.0012
LYS 4180.0012
ILE 4190.0010
SER 4200.0010
LYS 4210.0009
ILE 4220.0009
GLU 4230.0011
SER 4240.0011
ASP 4250.0016
ALA 4260.0016
PHE 4270.0019
SER 4280.0022
TRP 4290.0026
LEU 4300.0026
GLY 4310.0028
HIS 4320.0031
LEU 4330.0026
GLU 4340.0026
VAL 4350.0022
LEU 4360.0017
ASP 4370.0013
LEU 4380.0010
GLY 4390.0008
LEU 4400.0007
ASN 4410.0007
GLU 4420.0009
ILE 4430.0007
GLY 4440.0009
GLN 4450.0008
GLU 4460.0009
LEU 4470.0009
THR 4480.0010
GLY 4490.0013
GLN 4500.0012
GLU 4510.0012
TRP 4520.0015
ARG 4530.0018
GLY 4540.0023
LEU 4550.0023
GLU 4560.0027
ASN 4570.0029
ILE 4580.0024
PHE 4590.0026
GLU 4600.0021
ILE 4610.0017
TYR 4620.0014
LEU 4630.0011
SER 4640.0012
TYR 4650.0010
ASN 4660.0009
LYS 4670.0011
TYR 4680.0011
LEU 4690.0011
GLN 4700.0012
LEU 4710.0015
THR 4720.0016
ARG 4730.0019
ASN 4740.0017
SER 4750.0015
PHE 4760.0018
ALA 4770.0021
LEU 4780.0020
VAL 4790.0022
PRO 4800.0026
SER 4810.0028
LEU 4820.0024
GLN 4830.0026
ARG 4840.0023
LEU 4850.0020
MET 4860.0017
LEU 4870.0016
ARG 4880.0016
ARG 4890.0015
VAL 4900.0013
ALA 4910.0016
LEU 4920.0016
LYS 4930.0017
ASN 4940.0019
VAL 4950.0021
ASP 4960.0023
SER 4970.0022
SER 4980.0025
PRO 4990.0026
SER 5000.0024
PRO 5010.0021
PHE 5020.0023
GLN 5030.0026
PRO 5040.0026
LEU 5050.0026
ARG 5060.0030
ASN 5070.0030
LEU 5080.0027
THR 5090.0028
ILE 5100.0025
LEU 5110.0023
ASP 5120.0021
LEU 5130.0021
SER 5140.0021
ASN 5150.0020
ASN 5160.0019
ASN 5170.0022
ILE 5180.0022
ALA 5190.0025
ASN 5200.0025
ILE 5210.0026
ASN 5220.0028
ASP 5230.0031
ASP 5240.0030
MET 5250.0027
LEU 5260.0029
GLU 5270.0031
GLY 5280.0032
LEU 5290.0030
GLU 5300.0033
LYS 5310.0031
LEU 5320.0029
GLU 5330.0029
ILE 5340.0026
LEU 5350.0026
ASP 5360.0024
LEU 5370.0024
GLN 5380.0024
HIS 5390.0023
ASN 5400.0024
ASN 5410.0026
LEU 5420.0027
ALA 5430.0030
ARG 5440.0031
LEU 5450.0031
TRP 5460.0032
LYS 5470.0034
HIS 5480.0037
ALA 5490.0036
ASN 5500.0034
PRO 5510.0034
GLY 5520.0034
GLY 5530.0035
PRO 5540.0034
ILE 5550.0032
TYR 5560.0033
PHE 5570.0030
LEU 5580.0031
LYS 5590.0033
GLY 5600.0033
LEU 5610.0032
SER 5620.0034
HIS 5630.0032
LEU 5640.0031
HIS 5650.0030
ILE 5660.0028
LEU 5670.0028
ASN 5680.0027
LEU 5690.0028
GLU 5700.0027
SER 5710.0027
ASN 5720.0027
GLY 5730.0030
PHE 5740.0031
ASP 5750.0034
GLU 5760.0035
ILE 5770.0034
PRO 5780.0036
VAL 5790.0038
GLU 5800.0037
VAL 5810.0033
PHE 5820.0034
LYS 5830.0036
ASP 5840.0035
LEU 5850.0033
PHE 5860.0034
GLU 5870.0033
LEU 5880.0032
LYS 5890.0032
ILE 5900.0031
ILE 5910.0031
ASP 5920.0029
LEU 5930.0030
GLY 5940.0030
LEU 5950.0029
ASN 5960.0031
ASN 5970.0033
LEU 5980.0034
ASN 5990.0037
THR 6000.0038
LEU 6010.0037
PRO 6020.0039
ALA 6030.0040
SER 6040.0040
VAL 6050.0037
PHE 6060.0036
ASN 6070.0038
ASN 6080.0036
GLN 6090.0035
VAL 6100.0036
SER 6110.0035
LEU 6120.0034
LYS 6130.0033
SER 6140.0032
LEU 6150.0033
ASN 6160.0031
LEU 6170.0032
GLN 6180.0032
LYS 6190.0032
ASN 6200.0033
LEU 6210.0035
ILE 6220.0037
THR 6230.0039
SER 6240.0041
VAL 6250.0040
GLU 6260.0042
LYS 6270.0042
LYS 6280.0042
VAL 6290.0039
PHE 6300.0039
GLY 6310.0040
PRO 6320.0039
ALA 6330.0037
PHE 6340.0038
ARG 6350.0039
ASN 6360.0037
LEU 6370.0036
THR 6380.0034
GLU 6390.0033
LEU 6400.0034
ASP 6410.0033
MET 6420.0034
ARG 6430.0034
PHE 6440.0034
ASN 6450.0036
PRO 6460.0038
PHE 6470.0040
ASP 6480.0042
CYS 6490.0044
THR 6500.0046
CYS 6510.0048
GLU 6520.0047
SER 6530.0044
ILE 6540.0043
ALA 6550.0046
TRP 6560.0044
PHE 6570.0042
VAL 6580.0043
ASN 6590.0045
TRP 6600.0042
ILE 6610.0041
ASN 6620.0043
GLU 6630.0044
THR 6640.0041
HIS 6650.0039
THR 6660.0037
ASN 6670.0035
ILE 6680.0035
PRO 6690.0033
GLU 6700.0034
LEU 6710.0036
SER 6720.0038
SER 6730.0036
HIS 6740.0035
TYR 6750.0037
LEU 6760.0039
CYS 6770.0041
ASN 6780.0041
THR 6790.0043
PRO 6800.0046
PRO 6810.0046
HIS 6820.0047
TYR 6830.0045
HIS 6840.0043
GLY 6850.0041
PHE 6860.0043
PRO 6870.0041
VAL 6880.0042
ARG 6890.0042
LEU 6900.0044
PHE 6910.0046
ASP 6920.0048
THR 6930.0049
SER 6940.0051
SER 6950.0052
CYS 6960.0051
GLU 10.0060
ALA 20.0059
ALA 30.0055
ALA 40.0051
LYS 50.0050
MET 60.0048
GLN 70.0044
ARG 80.0041
LEU 90.0040
VAL 100.0037
LEU 110.0033
LEU 120.0032
LEU 130.0030
ALA 140.0027
ILE 150.0023
SER 160.0022
LEU 170.0020
LEU 180.0016
LEU 190.0013
TYR 200.0012
GLN 210.0011
ASP 220.0006
LEU 230.0004
PRO 240.0007
VAL 250.0009
ARG 260.0013
SER 270.0018
GLU 280.0020
PHE 290.0027
GLU 300.0028
LEU 310.0026
ASP 320.0029
ARG 330.0035
ILE 340.0036
CYS 350.0038
GLY 360.0043
TYR 370.0040
GLY 380.0040
THR 390.0047
ALA 400.0046
ARG 410.0044
CYS 420.0040
ARG 430.0044
LYS 440.0044
LYS 450.0051
CYS 460.0055
ARG 470.0060
SER 480.0066
GLN 490.0065
GLU 500.0060
TYR 510.0059
ARG 520.0053
ILE 530.0051
GLY 540.0045
ARG 550.0039
CYS 560.0035
PRO 570.0028
ASN 580.0028
THR 590.0032
TYR 600.0038
ALA 610.0044
CYS 620.0045
CYS 630.0050
LEU 640.0052
ARG 650.0057
LYS 660.0064
TRP 670.0060
ASP 680.0062
GLU 690.0065
SER 700.0062
LEU 710.0054
LEU 720.0056
ASN 730.0057
ARG 740.0050
THR 750.0046
LYS 760.0045
PRO 770.0032
GLU 780.0030
ALA 790.0020
ALA 800.0015
ALA 810.0029
LYS 820.0034
LYS 830.0032
GLU 840.0043
MET 850.0042
ASN 860.0046
LEU 870.0044
SER 880.0046
VAL 890.0047
GLY 900.0048
LEU 910.0052
GLY 920.0053
GLY 930.0060
GLY 940.0061
SER 950.0061
ASN 960.0058
LEU 970.0058
SER 980.0056
VAL 990.0055
GLY 1000.0055
LEU 1010.0053
GLY 1020.0054
GLU 1030.0051
ILE 1040.0056
GLY 1050.0055
GLY 1060.0054
GLY 1070.0054
SER 1080.0054
LYS 1090.0054
LEU 1100.0055
LEU 1110.0052
ASP 1120.0056
ILE 1130.0054
ASN 1140.0058
LEU 1150.0056
GLY 1160.0061
ARG 1170.0062
GLY 1180.0059
GLY 1190.0053
GLY 1200.0047
SER 1210.0047
MET 1220.0041
VAL 1230.0040
ASP 1240.0035
LEU 1250.0034
THR 1260.0031
PHE 1270.0028
GLY 1280.0026
GLY 1290.0022
VAL 1300.0023
GLY 1310.0026
GLY 1320.0031
GLY 1330.0030
SER 1340.0032
THR 1350.0031
PHE 1360.0031
THR 1370.0034
PHE 1380.0034
PHE 1390.0038
PRO 1400.0037
LEU 1410.0043
VAL 1420.0045
ILE 1430.0049
GLY 1440.0053
GLY 1450.0054
GLY 1460.0058
SER 1470.0059
ASP 1480.0055
ALA 1490.0054
MET 1500.0047
TYR 1510.0048
LEU 1520.0042
GLY 1530.0043
PHE 1540.0039
ALA 1550.0041
ALA 1560.0039
GLY 1570.0038
GLY 1580.0038
GLY 1590.0034
SER 1600.0031
ALA 1610.0030
GLY 1620.0025
GLY 1630.0022
GLU 1640.0022
ASN 1650.0024
HIS 1660.0026
VAL 1670.0028
ALA 1680.0029
PHE 1690.0033
GLY 1700.0033
PRO 1710.0036
GLY 1720.0031
PRO 1730.0031
GLY 1740.0028
VAL 1750.0028
ASP 1760.0025
LEU 1770.0024
THR 1780.0022
PHE 1790.0023
GLY 1800.0023
GLY 1810.0024
VAL 1820.0024
GLN 1830.0023
PHE 1840.0024
ALA 1850.0024
MET 1860.0027
VAL 1870.0028
ASN 1880.0030
ASN 1890.0034
GLY 1900.0036
PRO 1910.0041
GLY 1920.0042
PRO 1930.0045
GLY 1940.0054
GLU 1950.0057
SER 1960.0065
PHE 1970.0067
THR 1980.0079
ALA 1990.0078
GLN 2000.0087
PRO 2010.0089
ALA 2020.0094
ASP 2030.0083
MET 2040.0075
GLN 2050.0080
ALA 2060.0072
GLY 2070.0071
ILE 2080.0058
LYS 2090.0058
GLY 2100.0049
PRO 2110.0043
GLY 2120.0040
PRO 2130.0035
GLY 2140.0037
GLY 2150.0041
SER 2160.0039
ILE 2170.0037
GLN 2180.0038
VAL 2190.0036
ILE 2200.0043
ASN 2210.0044
GLY 2220.0049
SER 2230.0061
THR 2240.0062
ILE 2250.0072
GLY 2260.0084
THR 2270.0087
GLY 2280.0096
SER 2290.0098
LYS 2300.0095
LYS 2310.0079
THR 2320.0076
ILE 2330.0060
LEU 2340.0055
ILE 2350.0041
TYR 2360.0036
SER 2370.0032
ILE 2380.0027
ILE 2390.0036
GLY 2400.0034
VAL 2410.0034
LYS 2420.0039
LYS 2430.0046
GLY 2440.0055
THR 2450.0053
LEU 2460.0051
ALA 2470.0055
TRP 2480.0057
ALA 2490.0060
ARG 2500.0066
THR 2510.0069
GLY 2520.0082
PHE 2530.0083
SER 2540.0096
PRO 2550.0100
ALA 2560.0104
LYS 2570.0110
LYS 2580.0108
LEU 2590.0107
ASN 2600.0107
ALA 2610.0100
GLY 2620.0092
VAL 2630.0083
VAL 2640.0064
ARG 2650.0064
VAL 2660.0054
PHE 2670.0058
PHE 2680.0064
LEU 2690.0071
ASN 2700.0066
GLN 2710.0050
LYS 2720.0055
LYS 2730.0114
ALA 2740.0132
LYS 2750.0154
ASP 2760.0188
VAL 2770.0235
LEU 2780.0272
ARG 2790.0336
LYS 2800.0348
THR 2810.0420
SER 2820.0529
ARG 2830.0544
PRO 2840.0657
MET 2850.0675
VAL 2860.0772
ASP 2870.0988
LEU 2880.0955
THR 2890.1201
PHE 2900.1292
GLY 2910.1552
GLY 2920.1574

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.