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***  TLR_3_simulation  ***

<R2> analysis for 2608260325273940753

---  normal mode 82  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0875
THR 260.0082
LYS 270.0057
CYS 280.0031
THR 290.0024
VAL 300.0033
SER 310.0040
HIS 320.0062
GLU 330.0057
VAL 340.0045
ALA 350.0025
ASP 360.0035
CYS 370.0034
SER 380.0059
HIS 390.0079
LEU 400.0068
LYS 410.0051
LEU 420.0035
THR 430.0039
GLN 440.0053
VAL 450.0044
PRO 460.0047
ASP 470.0064
ASP 480.0063
LEU 490.0049
PRO 500.0054
THR 510.0060
ASN 520.0056
ILE 530.0047
THR 540.0054
VAL 550.0047
LEU 560.0042
ASN 570.0040
LEU 580.0032
THR 590.0050
HIS 600.0057
ASN 610.0032
GLN 620.0027
LEU 630.0039
ARG 640.0059
ARG 650.0075
LEU 660.0066
PRO 670.0077
ALA 680.0086
ALA 690.0087
ASN 700.0067
PHE 710.0070
THR 720.0083
ARG 730.0071
TYR 740.0059
SER 750.0072
GLN 760.0059
LEU 770.0056
THR 780.0061
SER 790.0057
LEU 800.0055
ASP 810.0052
VAL 820.0051
GLY 830.0059
PHE 840.0056
ASN 850.0051
THR 860.0066
ILE 870.0072
SER 880.0090
LYS 890.0094
LEU 900.0085
GLU 910.0085
PRO 920.0087
GLU 930.0082
LEU 940.0073
CYS 950.0073
GLN 960.0081
LYS 970.0074
LEU 980.0068
PRO 990.0069
MET 1000.0062
LEU 1010.0062
LYS 1020.0065
VAL 1030.0066
LEU 1040.0071
ASN 1050.0074
LEU 1060.0075
GLN 1070.0083
HIS 1080.0090
ASN 1090.0090
GLU 1100.0098
LEU 1110.0094
SER 1120.0094
GLN 1130.0087
LEU 1140.0076
SER 1150.0071
ASP 1160.0064
LYS 1170.0067
THR 1180.0072
PHE 1190.0065
ALA 1200.0058
PHE 1210.0064
CYS 1220.0062
THR 1230.0058
ASN 1240.0053
LEU 1250.0060
THR 1260.0061
GLU 1270.0067
LEU 1280.0069
HIS 1290.0076
LEU 1300.0078
MET 1310.0085
SER 1320.0096
ASN 1330.0093
SER 1340.0095
ILE 1350.0083
GLN 1360.0064
LYS 1370.0055
ILE 1380.0046
LYS 1390.0045
ASN 1400.0038
ASN 1410.0032
PRO 1420.0045
PHE 1430.0041
VAL 1440.0027
LYS 1450.0033
GLN 1460.0041
LYS 1470.0034
ASN 1480.0042
LEU 1490.0053
ILE 1500.0063
THR 1510.0060
LEU 1520.0055
ASP 1530.0065
LEU 1540.0061
SER 1550.0069
HIS 1560.0081
ASN 1570.0074
GLY 1580.0067
LEU 1590.0051
SER 1600.0041
SER 1610.0028
THR 1620.0021
LYS 1630.0020
LEU 1640.0028
GLY 1650.0023
THR 1660.0022
GLN 1670.0028
VAL 1680.0036
GLN 1690.0029
LEU 1700.0038
GLU 1710.0040
ASN 1720.0050
LEU 1730.0050
GLN 1740.0058
GLU 1750.0060
LEU 1760.0043
LEU 1770.0049
LEU 1780.0041
SER 1790.0053
ASN 1800.0058
ASN 1810.0047
LYS 1820.0039
ILE 1830.0026
GLN 1840.0030
ALA 1850.0044
LEU 1860.0046
LYS 1870.0053
SER 1880.0055
GLU 1890.0055
GLU 1900.0046
LEU 1910.0041
ASP 1920.0046
ILE 1930.0038
PHE 1940.0042
ALA 1950.0050
ASN 1960.0051
SER 1970.0052
SER 1980.0057
LEU 1990.0055
LYS 2000.0061
LYS 2010.0052
LEU 2020.0042
GLU 2030.0042
LEU 2040.0036
SER 2050.0041
SER 2060.0032
ASN 2070.0032
GLN 2080.0033
ILE 2090.0034
LYS 2100.0045
GLU 2110.0061
PHE 2120.0061
SER 2130.0063
PRO 2140.0066
GLY 2150.0065
CYS 2160.0060
PHE 2170.0057
HIS 2180.0058
ALA 2190.0057
ILE 2200.0057
GLY 2210.0054
ARG 2220.0054
LEU 2230.0054
PHE 2240.0055
GLY 2250.0055
LEU 2260.0033
PHE 2270.0033
LEU 2280.0030
ASN 2290.0033
ASN 2300.0034
VAL 2310.0038
GLN 2320.0042
LEU 2330.0046
GLY 2340.0049
PRO 2350.0054
SER 2360.0065
LEU 2370.0064
THR 2380.0065
GLU 2390.0069
LYS 2400.0070
LEU 2410.0066
CYS 2420.0067
LEU 2430.0066
GLU 2440.0066
LEU 2450.0069
ALA 2460.0067
ASN 2470.0063
THR 2480.0059
SER 2490.0053
ILE 2500.0052
ARG 2510.0048
ASN 2520.0044
LEU 2530.0040
SER 2540.0036
LEU 2550.0032
SER 2560.0025
ASN 2570.0030
SER 2580.0039
GLN 2590.0042
LEU 2600.0044
SER 2610.0049
THR 2620.0060
THR 2630.0070
SER 2640.0084
ASN 2650.0097
THR 2660.0085
THR 2670.0082
PHE 2680.0081
LEU 2690.0084
GLY 2700.0084
LEU 2710.0077
LYS 2720.0075
TRP 2730.0075
THR 2740.0073
ASN 2750.0070
LEU 2760.0068
THR 2770.0066
MET 2780.0057
LEU 2790.0050
ASP 2800.0041
LEU 2810.0042
SER 2820.0030
TYR 2830.0029
ASN 2840.0036
ASN 2850.0026
LEU 2860.0044
ASN 2870.0040
VAL 2880.0056
VAL 2890.0067
GLY 2900.0086
ASN 2910.0097
ASP 2920.0099
SER 2930.0093
PHE 2940.0088
ALA 2950.0100
TRP 2960.0091
LEU 2970.0085
PRO 2980.0086
GLN 2990.0084
LEU 3000.0076
GLU 3010.0072
TYR 3020.0062
PHE 3030.0052
PHE 3040.0042
LEU 3050.0033
GLU 3060.0019
TYR 3070.0019
ASN 3080.0021
ASN 3090.0020
ILE 3100.0038
GLN 3110.0047
HIS 3120.0061
LEU 3130.0062
PHE 3140.0084
SER 3150.0097
HIS 3160.0098
SER 3170.0086
LEU 3180.0077
HIS 3190.0094
GLY 3200.0101
LEU 3210.0081
PHE 3220.0082
ASN 3230.0081
VAL 3240.0068
ARG 3250.0060
TYR 3260.0044
LEU 3270.0034
ASN 3280.0023
LEU 3290.0015
LYS 3300.0017
ARG 3310.0032
SER 3320.0021
PHE 3330.0032
THR 3340.0034
LYS 3350.0060
GLN 3360.0099
SER 3370.0128
ILE 3380.0175
SER 3390.0194
LEU 3400.0146
ALA 3410.0117
SER 3420.0082
LEU 3430.0074
PRO 3440.0050
LYS 3450.0075
ILE 3460.0065
ASP 3470.0077
ASP 3480.0079
PHE 3490.0073
SER 3500.0066
PHE 3510.0057
GLN 3520.0067
TRP 3530.0076
LEU 3540.0061
LYS 3550.0061
CYS 3560.0054
LEU 3570.0042
GLU 3580.0034
HIS 3590.0032
LEU 3600.0023
ASN 3610.0011
MET 3620.0011
GLU 3630.0018
ASP 3640.0026
ASN 3650.0025
ASP 3660.0025
ILE 3670.0024
PRO 3680.0023
GLY 3690.0022
ILE 3700.0020
LYS 3710.0066
SER 3720.0063
ASN 3730.0055
MET 3740.0049
PHE 3750.0038
THR 3760.0051
GLY 3770.0046
LEU 3780.0035
ILE 3790.0030
ASN 3800.0028
LEU 3810.0019
LYS 3820.0024
TYR 3830.0024
LEU 3840.0020
SER 3850.0020
LEU 3860.0015
SER 3870.0013
ASN 3880.0014
SER 3890.0013
PHE 3900.0018
THR 3910.0038
SER 3920.0057
LEU 3930.0056
ARG 3940.0085
THR 3950.0097
LEU 3960.0082
THR 3970.0103
ASN 3980.0111
GLU 3990.0113
THR 4000.0089
PHE 4010.0068
VAL 4020.0082
SER 4030.0068
LEU 4040.0055
ALA 4050.0073
HIS 4060.0070
SER 4070.0052
PRO 4080.0053
LEU 4090.0043
HIS 4100.0046
ILE 4110.0031
LEU 4120.0026
ASN 4130.0017
LEU 4140.0026
THR 4150.0026
LYS 4160.0043
ASN 4170.0048
LYS 4180.0071
ILE 4190.0070
SER 4200.0091
LYS 4210.0094
ILE 4220.0081
GLU 4230.0100
SER 4240.0102
ASP 4250.0103
ALA 4260.0089
PHE 4270.0076
SER 4280.0097
TRP 4290.0096
LEU 4300.0077
GLY 4310.0091
HIS 4320.0082
LEU 4330.0060
GLU 4340.0057
VAL 4350.0038
LEU 4360.0024
ASP 4370.0017
LEU 4380.0026
GLY 4390.0034
LEU 4400.0052
ASN 4410.0063
GLU 4420.0081
ILE 4430.0070
GLY 4440.0084
GLN 4450.0077
GLU 4460.0069
LEU 4470.0050
THR 4480.0060
GLY 4490.0054
GLN 4500.0079
GLU 4510.0074
TRP 4520.0063
ARG 4530.0089
GLY 4540.0098
LEU 4550.0075
GLU 4560.0084
ASN 4570.0079
ILE 4580.0056
PHE 4590.0058
GLU 4600.0043
ILE 4610.0032
TYR 4620.0033
LEU 4630.0031
SER 4640.0048
TYR 4650.0062
ASN 4660.0062
LYS 4670.0083
TYR 4680.0074
LEU 4690.0050
GLN 4700.0046
LEU 4710.0038
THR 4720.0029
ARG 4730.0023
ASN 4740.0032
SER 4750.0028
PHE 4760.0032
ALA 4770.0047
LEU 4780.0053
VAL 4790.0047
PRO 4800.0062
SER 4810.0058
LEU 4820.0052
GLN 4830.0060
ARG 4840.0057
LEU 4850.0052
MET 4860.0053
LEU 4870.0049
ARG 4880.0062
ARG 4890.0066
VAL 4900.0054
ALA 4910.0071
LEU 4920.0058
LYS 4930.0056
ASN 4940.0047
VAL 4950.0050
ASP 4960.0059
SER 4970.0049
SER 4980.0049
PRO 4990.0048
SER 5000.0050
PRO 5010.0046
PHE 5020.0051
GLN 5030.0053
PRO 5040.0051
LEU 5050.0055
ARG 5060.0064
ASN 5070.0063
LEU 5080.0063
THR 5090.0065
ILE 5100.0065
LEU 5110.0063
ASP 5120.0062
LEU 5130.0060
SER 5140.0063
ASN 5150.0062
ASN 5160.0060
ASN 5170.0056
ILE 5180.0058
ALA 5190.0055
ASN 5200.0057
ILE 5210.0061
ASN 5220.0061
ASP 5230.0060
ASP 5240.0061
MET 5250.0060
LEU 5260.0060
GLU 5270.0061
GLY 5280.0059
LEU 5290.0057
GLU 5300.0053
LYS 5310.0052
LEU 5320.0053
GLU 5330.0051
ILE 5340.0052
LEU 5350.0054
ASP 5360.0055
LEU 5370.0051
GLN 5380.0048
HIS 5390.0048
ASN 5400.0048
ASN 5410.0044
LEU 5420.0040
ALA 5430.0033
ARG 5440.0035
LEU 5450.0038
TRP 5460.0022
LYS 5470.0018
HIS 5480.0025
ALA 5490.0028
ASN 5500.0041
PRO 5510.0070
GLY 5520.0080
GLY 5530.0058
PRO 5540.0039
ILE 5550.0048
TYR 5560.0039
PHE 5570.0047
LEU 5580.0040
LYS 5590.0043
GLY 5600.0048
LEU 5610.0043
SER 5620.0039
HIS 5630.0039
LEU 5640.0038
HIS 5650.0033
ILE 5660.0033
LEU 5670.0029
ASN 5680.0029
LEU 5690.0022
GLU 5700.0022
SER 5710.0031
ASN 5720.0025
GLY 5730.0024
PHE 5740.0012
ASP 5750.0024
GLU 5760.0020
ILE 5770.0017
PRO 5780.0021
VAL 5790.0029
GLU 5800.0029
VAL 5810.0017
PHE 5820.0015
LYS 5830.0028
ASP 5840.0032
LEU 5850.0021
PHE 5860.0026
GLU 5870.0021
LEU 5880.0015
LYS 5890.0013
ILE 5900.0018
ILE 5910.0012
ASP 5920.0014
LEU 5930.0021
GLY 5940.0029
LEU 5950.0035
ASN 5960.0043
ASN 5970.0055
LEU 5980.0054
ASN 5990.0069
THR 6000.0073
LEU 6010.0057
PRO 6020.0059
ALA 6030.0062
SER 6040.0057
VAL 6050.0049
PHE 6060.0039
ASN 6070.0046
ASN 6080.0037
GLN 6090.0029
VAL 6100.0034
SER 6110.0033
LEU 6120.0034
LYS 6130.0032
SER 6140.0035
LEU 6150.0040
ASN 6160.0046
LEU 6170.0053
GLN 6180.0053
LYS 6190.0059
ASN 6200.0064
LEU 6210.0084
ILE 6220.0078
THR 6230.0076
SER 6240.0075
VAL 6250.0069
GLU 6260.0066
LYS 6270.0063
LYS 6280.0070
VAL 6290.0067
PHE 6300.0059
GLY 6310.0057
PRO 6320.0052
ALA 6330.0049
PHE 6340.0052
ARG 6350.0051
ASN 6360.0046
LEU 6370.0046
THR 6380.0044
GLU 6390.0045
LEU 6400.0048
ASP 6410.0053
MET 6420.0056
ARG 6430.0057
PHE 6440.0064
ASN 6450.0065
PRO 6460.0082
PHE 6470.0058
ASP 6480.0051
CYS 6490.0026
THR 6500.0042
CYS 6510.0073
GLU 6520.0097
SER 6530.0079
ILE 6540.0051
ALA 6550.0062
TRP 6560.0038
PHE 6570.0033
VAL 6580.0019
ASN 6590.0026
TRP 6600.0029
ILE 6610.0013
ASN 6620.0014
GLU 6630.0025
THR 6640.0026
HIS 6650.0027
THR 6660.0038
ASN 6670.0040
ILE 6680.0040
PRO 6690.0049
GLU 6700.0051
LEU 6710.0038
SER 6720.0044
SER 6730.0062
HIS 6740.0062
TYR 6750.0045
LEU 6760.0070
CYS 6770.0054
ASN 6780.0080
THR 6790.0066
PRO 6800.0041
PRO 6810.0084
HIS 6820.0086
TYR 6830.0071
HIS 6840.0100
GLY 6850.0119
PHE 6860.0092
PRO 6870.0071
VAL 6880.0033
ARG 6890.0029
LEU 6900.0063
PHE 6910.0075
ASP 6920.0117
THR 6930.0122
SER 6940.0192
SER 6950.0191
CYS 6960.0178
GLU 10.0153
ALA 20.0196
ALA 30.0161
ALA 40.0088
LYS 50.0126
MET 60.0148
GLN 70.0118
ARG 80.0078
LEU 90.0136
VAL 100.0164
LEU 110.0103
LEU 120.0093
LEU 130.0145
ALA 140.0148
ILE 150.0105
SER 160.0134
LEU 170.0153
LEU 180.0139
LEU 190.0112
TYR 200.0122
GLN 210.0225
ASP 220.0239
LEU 230.0270
PRO 240.0363
VAL 250.0310
ARG 260.0265
SER 270.0191
GLU 280.0075
PHE 290.0132
GLU 300.0077
LEU 310.0027
ASP 320.0063
ARG 330.0077
ILE 340.0068
CYS 350.0105
GLY 360.0171
TYR 370.0197
GLY 380.0089
THR 390.0093
ALA 400.0026
ARG 410.0059
CYS 420.0077
ARG 430.0069
LYS 440.0078
LYS 450.0054
CYS 460.0039
ARG 470.0066
SER 480.0088
GLN 490.0086
GLU 500.0052
TYR 510.0042
ARG 520.0030
ILE 530.0053
GLY 540.0067
ARG 550.0078
CYS 560.0097
PRO 570.0124
ASN 580.0122
THR 590.0102
TYR 600.0084
ALA 610.0062
CYS 620.0058
CYS 630.0030
LEU 640.0035
ARG 650.0050
LYS 660.0129
TRP 670.0136
ASP 680.0107
GLU 690.0064
SER 700.0082
LEU 710.0094
LEU 720.0056
ASN 730.0048
ARG 740.0057
THR 750.0048
LYS 760.0109
PRO 770.0094
GLU 780.0081
ALA 790.0110
ALA 800.0108
ALA 810.0109
LYS 820.0085
LYS 830.0078
GLU 840.0050
MET 850.0046
ASN 860.0050
LEU 870.0042
SER 880.0049
VAL 890.0042
GLY 900.0051
LEU 910.0042
GLY 920.0089
GLY 930.0151
GLY 940.0196
SER 950.0141
ASN 960.0089
LEU 970.0064
SER 980.0063
VAL 990.0040
GLY 1000.0043
LEU 1010.0020
GLY 1020.0061
GLU 1030.0094
ILE 1040.0107
GLY 1050.0134
GLY 1060.0047
GLY 1070.0054
SER 1080.0060
LYS 1090.0039
LEU 1100.0061
LEU 1110.0043
ASP 1120.0068
ILE 1130.0054
ASN 1140.0091
LEU 1150.0082
GLY 1160.0218
ARG 1170.0394
GLY 1180.0450
GLY 1190.0384
GLY 1200.0198
SER 1210.0075
MET 1220.0058
VAL 1230.0045
ASP 1240.0031
LEU 1250.0023
THR 1260.0020
PHE 1270.0018
GLY 1280.0013
GLY 1290.0012
VAL 1300.0012
GLY 1310.0026
GLY 1320.0021
GLY 1330.0014
SER 1340.0015
THR 1350.0013
PHE 1360.0010
THR 1370.0026
PHE 1380.0029
PHE 1390.0050
PRO 1400.0059
LEU 1410.0095
VAL 1420.0247
ILE 1430.0284
GLY 1440.0448
GLY 1450.0519
GLY 1460.0102
SER 1470.0025
ASP 1480.0065
ALA 1490.0051
MET 1500.0041
TYR 1510.0029
LEU 1520.0018
GLY 1530.0012
PHE 1540.0011
ALA 1550.0012
ALA 1560.0013
GLY 1570.0017
GLY 1580.0015
GLY 1590.0021
SER 1600.0026
ALA 1610.0013
GLY 1620.0012
GLY 1630.0012
GLU 1640.0017
ASN 1650.0018
HIS 1660.0018
VAL 1670.0020
ALA 1680.0016
PHE 1690.0016
GLY 1700.0014
PRO 1710.0039
GLY 1720.0057
PRO 1730.0074
GLY 1740.0059
VAL 1750.0039
ASP 1760.0024
LEU 1770.0022
THR 1780.0020
PHE 1790.0022
GLY 1800.0024
GLY 1810.0027
VAL 1820.0025
GLN 1830.0024
PHE 1840.0028
ALA 1850.0033
MET 1860.0059
VAL 1870.0046
ASN 1880.0027
ASN 1890.0037
GLY 1900.0055
PRO 1910.0069
GLY 1920.0044
PRO 1930.0032
GLY 1940.0035
GLU 1950.0059
SER 1960.0131
PHE 1970.0061
THR 1980.0045
ALA 1990.0037
GLN 2000.0066
PRO 2010.0065
ALA 2020.0051
ASP 2030.0084
MET 2040.0079
GLN 2050.0053
ALA 2060.0090
GLY 2070.0031
ILE 2080.0076
LYS 2090.0045
GLY 2100.0128
PRO 2110.0089
GLY 2120.0114
PRO 2130.0076
GLY 2140.0190
GLY 2150.0218
SER 2160.0171
ILE 2170.0211
GLN 2180.0201
VAL 2190.0239
ILE 2200.0295
ASN 2210.0355
GLY 2220.0275
SER 2230.0171
THR 2240.0218
ILE 2250.0213
GLY 2260.0174
THR 2270.0116
GLY 2280.0125
SER 2290.0093
LYS 2300.0048
LYS 2310.0085
THR 2320.0105
ILE 2330.0142
LEU 2340.0167
ILE 2350.0217
TYR 2360.0394
SER 2370.0454
ILE 2380.0472
ILE 2390.0389
GLY 2400.0452
VAL 2410.0875
LYS 2420.0556
LYS 2430.0431
GLY 2440.0345
THR 2450.0208
LEU 2460.0298
ALA 2470.0120
TRP 2480.0103
ALA 2490.0122
ARG 2500.0102
THR 2510.0205
GLY 2520.0147
PHE 2530.0134
SER 2540.0137
PRO 2550.0065
ALA 2560.0328
LYS 2570.0338
LYS 2580.0254
LEU 2590.0203
ASN 2600.0147
ALA 2610.0157
GLY 2620.0114
VAL 2630.0109
VAL 2640.0074
ARG 2650.0085
VAL 2660.0083
PHE 2670.0097
PHE 2680.0262
LEU 2690.0288
ASN 2700.0406
GLN 2710.0268
LYS 2720.0197
LYS 2730.0320
ALA 2740.0332
LYS 2750.0250
ASP 2760.0289
VAL 2770.0305
LEU 2780.0650
ARG 2790.0650
LYS 2800.0343
THR 2810.0046
SER 2820.0110
ARG 2830.0037
PRO 2840.0082
MET 2850.0050
VAL 2860.0142
ASP 2870.0127
LEU 2880.0126
THR 2890.0123
PHE 2900.0141
GLY 2910.0186
GLY 2920.0240

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.