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***  TLR_3_simulation  ***

<R2> analysis for 2608260325273940753

---  normal mode 87  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0611
THR 260.0150
LYS 270.0105
CYS 280.0058
THR 290.0033
VAL 300.0025
SER 310.0018
HIS 320.0084
GLU 330.0108
VAL 340.0072
ALA 350.0021
ASP 360.0047
CYS 370.0062
SER 380.0098
HIS 390.0129
LEU 400.0120
LYS 410.0131
LEU 420.0102
THR 430.0099
GLN 440.0079
VAL 450.0066
PRO 460.0103
ASP 470.0122
ASP 480.0149
LEU 490.0115
PRO 500.0145
THR 510.0158
ASN 520.0167
ILE 530.0120
THR 540.0132
VAL 550.0102
LEU 560.0061
ASN 570.0065
LEU 580.0061
THR 590.0096
HIS 600.0118
ASN 610.0104
GLN 620.0107
LEU 630.0079
ARG 640.0084
ARG 650.0062
LEU 660.0072
PRO 670.0066
ALA 680.0058
ALA 690.0072
ASN 700.0077
PHE 710.0070
THR 720.0098
ARG 730.0118
TYR 740.0102
SER 750.0126
GLN 760.0134
LEU 770.0109
THR 780.0128
SER 790.0108
LEU 800.0081
ASP 810.0079
VAL 820.0075
GLY 830.0088
PHE 840.0092
ASN 850.0084
THR 860.0093
ILE 870.0088
SER 880.0097
LYS 890.0091
LEU 900.0085
GLU 910.0091
PRO 920.0092
GLU 930.0081
LEU 940.0076
CYS 950.0083
GLN 960.0081
LYS 970.0075
LEU 980.0082
PRO 990.0096
MET 1000.0104
LEU 1010.0081
LYS 1020.0089
VAL 1030.0083
LEU 1040.0078
ASN 1050.0076
LEU 1060.0068
GLN 1070.0066
HIS 1080.0070
ASN 1090.0076
GLU 1100.0082
LEU 1110.0067
SER 1120.0074
GLN 1130.0078
LEU 1140.0074
SER 1150.0079
ASP 1160.0087
LYS 1170.0096
THR 1180.0087
PHE 1190.0073
ALA 1200.0082
PHE 1210.0083
CYS 1220.0073
THR 1230.0069
ASN 1240.0062
LEU 1250.0060
THR 1260.0045
GLU 1270.0043
LEU 1280.0040
HIS 1290.0040
LEU 1300.0042
MET 1310.0029
SER 1320.0045
ASN 1330.0050
SER 1340.0045
ILE 1350.0029
GLN 1360.0026
LYS 1370.0020
ILE 1380.0018
LYS 1390.0019
ASN 1400.0024
ASN 1410.0033
PRO 1420.0035
PHE 1430.0030
VAL 1440.0040
LYS 1450.0048
GLN 1460.0037
LYS 1470.0044
ASN 1480.0041
LEU 1490.0031
ILE 1500.0041
THR 1510.0036
LEU 1520.0029
ASP 1530.0031
LEU 1540.0025
SER 1550.0032
HIS 1560.0048
ASN 1570.0043
GLY 1580.0056
LEU 1590.0056
SER 1600.0077
SER 1610.0083
THR 1620.0080
LYS 1630.0073
LEU 1640.0062
GLY 1650.0060
THR 1660.0055
GLN 1670.0061
VAL 1680.0070
GLN 1690.0054
LEU 1700.0049
GLU 1710.0067
ASN 1720.0067
LEU 1730.0065
GLN 1740.0076
GLU 1750.0076
LEU 1760.0072
LEU 1770.0072
LEU 1780.0073
SER 1790.0075
ASN 1800.0075
ASN 1810.0076
LYS 1820.0085
ILE 1830.0091
GLN 1840.0104
ALA 1850.0109
LEU 1860.0103
LYS 1870.0110
SER 1880.0109
GLU 1890.0116
GLU 1900.0109
LEU 1910.0099
ASP 1920.0099
ILE 1930.0089
PHE 1940.0087
ALA 1950.0093
ASN 1960.0085
SER 1970.0084
SER 1980.0092
LEU 1990.0092
LYS 2000.0097
LYS 2010.0093
LEU 2020.0092
GLU 2030.0093
LEU 2040.0090
SER 2050.0090
SER 2060.0090
ASN 2070.0094
GLN 2080.0092
ILE 2090.0088
LYS 2100.0087
GLU 2110.0089
PHE 2120.0084
SER 2130.0096
PRO 2140.0093
GLY 2150.0097
CYS 2160.0095
PHE 2170.0087
HIS 2180.0091
ALA 2190.0103
ILE 2200.0098
GLY 2210.0093
ARG 2220.0088
LEU 2230.0085
PHE 2240.0081
GLY 2250.0081
LEU 2260.0069
PHE 2270.0078
LEU 2280.0073
ASN 2290.0090
ASN 2300.0102
VAL 2310.0095
GLN 2320.0098
LEU 2330.0072
GLY 2340.0081
PRO 2350.0072
SER 2360.0076
LEU 2370.0060
THR 2380.0053
GLU 2390.0049
LYS 2400.0030
LEU 2410.0036
CYS 2420.0018
LEU 2430.0023
GLU 2440.0038
LEU 2450.0039
ALA 2460.0042
ASN 2470.0071
THR 2480.0070
SER 2490.0075
ILE 2500.0054
ARG 2510.0041
ASN 2520.0042
LEU 2530.0036
SER 2540.0057
LEU 2550.0066
SER 2560.0081
ASN 2570.0102
SER 2580.0095
GLN 2590.0111
LEU 2600.0100
SER 2610.0125
THR 2620.0120
THR 2630.0101
SER 2640.0112
ASN 2650.0112
THR 2660.0106
THR 2670.0086
PHE 2680.0065
LEU 2690.0080
GLY 2700.0059
LEU 2710.0048
LYS 2720.0080
TRP 2730.0079
THR 2740.0059
ASN 2750.0061
LEU 2760.0029
THR 2770.0023
MET 2780.0014
LEU 2790.0030
ASP 2800.0051
LEU 2810.0088
SER 2820.0087
TYR 2830.0091
ASN 2840.0095
ASN 2850.0093
LEU 2860.0093
ASN 2870.0105
VAL 2880.0102
VAL 2890.0086
GLY 2900.0094
ASN 2910.0118
ASP 2920.0108
SER 2930.0097
PHE 2940.0078
ALA 2950.0090
TRP 2960.0088
LEU 2970.0067
PRO 2980.0078
GLN 2990.0061
LEU 3000.0038
GLU 3010.0030
TYR 3020.0016
PHE 3030.0035
PHE 3040.0049
LEU 3050.0071
GLU 3060.0081
TYR 3070.0080
ASN 3080.0078
ASN 3090.0071
ILE 3100.0069
GLN 3110.0087
HIS 3120.0079
LEU 3130.0062
PHE 3140.0069
SER 3150.0064
HIS 3160.0099
SER 3170.0089
LEU 3180.0069
HIS 3190.0083
GLY 3200.0081
LEU 3210.0067
PHE 3220.0071
ASN 3230.0058
VAL 3240.0038
ARG 3250.0028
TYR 3260.0015
LEU 3270.0029
ASN 3280.0036
LEU 3290.0051
LYS 3300.0058
ARG 3310.0072
SER 3320.0072
PHE 3330.0058
THR 3340.0050
LYS 3350.0049
GLN 3360.0050
SER 3370.0056
ILE 3380.0079
SER 3390.0106
LEU 3400.0089
ALA 3410.0038
SER 3420.0034
LEU 3430.0039
PRO 3440.0056
LYS 3450.0076
ILE 3460.0068
ASP 3470.0072
ASP 3480.0064
PHE 3490.0054
SER 3500.0049
PHE 3510.0046
GLN 3520.0059
TRP 3530.0067
LEU 3540.0047
LYS 3550.0059
CYS 3560.0055
LEU 3570.0032
GLU 3580.0035
HIS 3590.0024
LEU 3600.0013
ASN 3610.0030
MET 3620.0038
GLU 3630.0049
ASP 3640.0063
ASN 3650.0065
ASP 3660.0062
ILE 3670.0057
PRO 3680.0062
GLY 3690.0056
ILE 3700.0048
LYS 3710.0048
SER 3720.0035
ASN 3730.0038
MET 3740.0033
PHE 3750.0014
THR 3760.0033
GLY 3770.0048
LEU 3780.0036
ILE 3790.0057
ASN 3800.0058
LEU 3810.0040
LYS 3820.0056
TYR 3830.0054
LEU 3840.0041
SER 3850.0056
LEU 3860.0047
SER 3870.0066
ASN 3880.0075
SER 3890.0060
PHE 3900.0065
THR 3910.0074
SER 3920.0070
LEU 3930.0058
ARG 3940.0066
THR 3950.0058
LEU 3960.0051
THR 3970.0040
ASN 3980.0032
GLU 3990.0027
THR 4000.0035
PHE 4010.0029
VAL 4020.0015
SER 4030.0012
LEU 4040.0028
ALA 4050.0037
HIS 4060.0047
SER 4070.0045
PRO 4080.0064
LEU 4090.0060
HIS 4100.0078
ILE 4110.0076
LEU 4120.0067
ASN 4130.0076
LEU 4140.0072
THR 4150.0088
LYS 4160.0091
ASN 4170.0078
LYS 4180.0084
ILE 4190.0072
SER 4200.0073
LYS 4210.0062
ILE 4220.0058
GLU 4230.0049
SER 4240.0047
ASP 4250.0047
ALA 4260.0048
PHE 4270.0055
SER 4280.0052
TRP 4290.0047
LEU 4300.0058
GLY 4310.0063
HIS 4320.0069
LEU 4330.0071
GLU 4340.0081
VAL 4350.0084
LEU 4360.0075
ASP 4370.0081
LEU 4380.0076
GLY 4390.0088
LEU 4400.0094
ASN 4410.0089
GLU 4420.0082
ILE 4430.0071
GLY 4440.0064
GLN 4450.0054
GLU 4460.0044
LEU 4470.0044
THR 4480.0041
GLY 4490.0043
GLN 4500.0043
GLU 4510.0052
TRP 4520.0055
ARG 4530.0052
GLY 4540.0054
LEU 4550.0058
GLU 4560.0057
ASN 4570.0063
ILE 4580.0063
PHE 4590.0066
GLU 4600.0066
ILE 4610.0059
TYR 4620.0063
LEU 4630.0059
SER 4640.0067
TYR 4650.0069
ASN 4660.0067
LYS 4670.0062
TYR 4680.0050
LEU 4690.0043
GLN 4700.0034
LEU 4710.0026
THR 4720.0023
ARG 4730.0022
ASN 4740.0026
SER 4750.0029
PHE 4760.0034
ALA 4770.0033
LEU 4780.0036
VAL 4790.0038
PRO 4800.0037
SER 4810.0033
LEU 4820.0030
GLN 4830.0035
ARG 4840.0033
LEU 4850.0027
MET 4860.0040
LEU 4870.0036
ARG 4880.0040
ARG 4890.0040
VAL 4900.0037
ALA 4910.0030
LEU 4920.0023
LYS 4930.0020
ASN 4940.0016
VAL 4950.0012
ASP 4960.0015
SER 4970.0016
SER 4980.0018
PRO 4990.0020
SER 5000.0018
PRO 5010.0023
PHE 5020.0023
GLN 5030.0023
PRO 5040.0027
LEU 5050.0028
ARG 5060.0054
ASN 5070.0052
LEU 5080.0036
THR 5090.0023
ILE 5100.0012
LEU 5110.0015
ASP 5120.0013
LEU 5130.0007
SER 5140.0011
ASN 5150.0013
ASN 5160.0013
ASN 5170.0010
ILE 5180.0005
ALA 5190.0006
ASN 5200.0006
ILE 5210.0010
ASN 5220.0011
ASP 5230.0010
ASP 5240.0014
MET 5250.0015
LEU 5260.0019
GLU 5270.0020
GLY 5280.0031
LEU 5290.0033
GLU 5300.0038
LYS 5310.0042
LEU 5320.0029
GLU 5330.0022
ILE 5340.0017
LEU 5350.0018
ASP 5360.0010
LEU 5370.0008
GLN 5380.0009
HIS 5390.0008
ASN 5400.0007
ASN 5410.0006
LEU 5420.0004
ALA 5430.0005
ARG 5440.0005
LEU 5450.0003
TRP 5460.0005
LYS 5470.0010
HIS 5480.0012
ALA 5490.0014
ASN 5500.0010
PRO 5510.0014
GLY 5520.0010
GLY 5530.0009
PRO 5540.0005
ILE 5550.0002
TYR 5560.0005
PHE 5570.0009
LEU 5580.0013
LYS 5590.0015
GLY 5600.0021
LEU 5610.0026
SER 5620.0032
HIS 5630.0033
LEU 5640.0023
HIS 5650.0020
ILE 5660.0014
LEU 5670.0012
ASN 5680.0015
LEU 5690.0014
GLU 5700.0017
SER 5710.0014
ASN 5720.0012
GLY 5730.0013
PHE 5740.0010
ASP 5750.0013
GLU 5760.0012
ILE 5770.0008
PRO 5780.0009
VAL 5790.0011
GLU 5800.0011
VAL 5810.0005
PHE 5820.0010
LYS 5830.0017
ASP 5840.0023
LEU 5850.0021
PHE 5860.0026
GLU 5870.0028
LEU 5880.0022
LYS 5890.0018
ILE 5900.0019
ILE 5910.0012
ASP 5920.0014
LEU 5930.0014
GLY 5940.0018
LEU 5950.0021
ASN 5960.0018
ASN 5970.0019
LEU 5980.0017
ASN 5990.0018
THR 6000.0018
LEU 6010.0015
PRO 6020.0016
ALA 6030.0016
SER 6040.0014
VAL 6050.0010
PHE 6060.0006
ASN 6070.0013
ASN 6080.0016
GLN 6090.0013
VAL 6100.0019
SER 6110.0016
LEU 6120.0008
LYS 6130.0010
SER 6140.0017
LEU 6150.0018
ASN 6160.0018
LEU 6170.0017
GLN 6180.0021
LYS 6190.0022
ASN 6200.0019
LEU 6210.0019
ILE 6220.0020
THR 6230.0019
SER 6240.0021
VAL 6250.0024
GLU 6260.0020
LYS 6270.0021
LYS 6280.0018
VAL 6290.0018
PHE 6300.0022
GLY 6310.0017
PRO 6320.0008
ALA 6330.0015
PHE 6340.0020
ARG 6350.0013
ASN 6360.0007
LEU 6370.0012
THR 6380.0015
GLU 6390.0022
LEU 6400.0024
ASP 6410.0026
MET 6420.0023
ARG 6430.0024
PHE 6440.0021
ASN 6450.0019
PRO 6460.0007
PHE 6470.0015
ASP 6480.0022
CYS 6490.0032
THR 6500.0042
CYS 6510.0050
GLU 6520.0041
SER 6530.0024
ILE 6540.0032
ALA 6550.0052
TRP 6560.0036
PHE 6570.0035
VAL 6580.0034
ASN 6590.0037
TRP 6600.0038
ILE 6610.0031
ASN 6620.0029
GLU 6630.0030
THR 6640.0032
HIS 6650.0035
THR 6660.0028
ASN 6670.0030
ILE 6680.0029
PRO 6690.0033
GLU 6700.0035
LEU 6710.0031
SER 6720.0030
SER 6730.0028
HIS 6740.0025
TYR 6750.0023
LEU 6760.0010
CYS 6770.0014
ASN 6780.0018
THR 6790.0029
PRO 6800.0045
PRO 6810.0064
HIS 6820.0067
TYR 6830.0045
HIS 6840.0036
GLY 6850.0019
PHE 6860.0010
PRO 6870.0014
VAL 6880.0020
ARG 6890.0027
LEU 6900.0025
PHE 6910.0032
ASP 6920.0078
THR 6930.0105
SER 6940.0147
SER 6950.0153
CYS 6960.0167
GLU 10.0433
ALA 20.0377
ALA 30.0360
ALA 40.0224
LYS 50.0145
MET 60.0146
GLN 70.0121
ARG 80.0046
LEU 90.0069
VAL 100.0141
LEU 110.0088
LEU 120.0087
LEU 130.0121
ALA 140.0134
ILE 150.0123
SER 160.0143
LEU 170.0144
LEU 180.0138
LEU 190.0139
TYR 200.0143
GLN 210.0105
ASP 220.0128
LEU 230.0163
PRO 240.0128
VAL 250.0113
ARG 260.0288
SER 270.0248
GLU 280.0166
PHE 290.0160
GLU 300.0178
LEU 310.0106
ASP 320.0028
ARG 330.0040
ILE 340.0026
CYS 350.0095
GLY 360.0148
TYR 370.0169
GLY 380.0101
THR 390.0064
ALA 400.0059
ARG 410.0055
CYS 420.0080
ARG 430.0081
LYS 440.0099
LYS 450.0078
CYS 460.0067
ARG 470.0059
SER 480.0058
GLN 490.0058
GLU 500.0060
TYR 510.0064
ARG 520.0060
ILE 530.0064
GLY 540.0077
ARG 550.0092
CYS 560.0103
PRO 570.0122
ASN 580.0127
THR 590.0129
TYR 600.0110
ALA 610.0097
CYS 620.0083
CYS 630.0067
LEU 640.0060
ARG 650.0065
LYS 660.0185
TRP 670.0243
ASP 680.0135
GLU 690.0089
SER 700.0127
LEU 710.0217
LEU 720.0162
ASN 730.0093
ARG 740.0189
THR 750.0195
LYS 760.0165
PRO 770.0162
GLU 780.0161
ALA 790.0141
ALA 800.0169
ALA 810.0172
LYS 820.0137
LYS 830.0085
GLU 840.0046
MET 850.0065
ASN 860.0126
LEU 870.0116
SER 880.0103
VAL 890.0088
GLY 900.0081
LEU 910.0054
GLY 920.0173
GLY 930.0276
GLY 940.0258
SER 950.0136
ASN 960.0077
LEU 970.0073
SER 980.0091
VAL 990.0101
GLY 1000.0115
LEU 1010.0093
GLY 1020.0133
GLU 1030.0137
ILE 1040.0196
GLY 1050.0200
GLY 1060.0152
GLY 1070.0165
SER 1080.0176
LYS 1090.0165
LEU 1100.0183
LEU 1110.0174
ASP 1120.0151
ILE 1130.0106
ASN 1140.0113
LEU 1150.0075
GLY 1160.0119
ARG 1170.0224
GLY 1180.0229
GLY 1190.0246
GLY 1200.0175
SER 1210.0056
MET 1220.0036
VAL 1230.0045
ASP 1240.0046
LEU 1250.0070
THR 1260.0079
PHE 1270.0056
GLY 1280.0072
GLY 1290.0088
VAL 1300.0089
GLY 1310.0117
GLY 1320.0108
GLY 1330.0084
SER 1340.0089
THR 1350.0072
PHE 1360.0066
THR 1370.0052
PHE 1380.0033
PHE 1390.0034
PRO 1400.0036
LEU 1410.0026
VAL 1420.0073
ILE 1430.0086
GLY 1440.0159
GLY 1450.0201
GLY 1460.0210
SER 1470.0169
ASP 1480.0102
ALA 1490.0107
MET 1500.0066
TYR 1510.0048
LEU 1520.0052
GLY 1530.0050
PHE 1540.0062
ALA 1550.0068
ALA 1560.0112
GLY 1570.0096
GLY 1580.0083
GLY 1590.0064
SER 1600.0053
ALA 1610.0069
GLY 1620.0083
GLY 1630.0082
GLU 1640.0075
ASN 1650.0059
HIS 1660.0072
VAL 1670.0070
ALA 1680.0073
PHE 1690.0075
GLY 1700.0077
PRO 1710.0163
GLY 1720.0181
PRO 1730.0196
GLY 1740.0089
VAL 1750.0064
ASP 1760.0086
LEU 1770.0057
THR 1780.0081
PHE 1790.0079
GLY 1800.0118
GLY 1810.0192
VAL 1820.0146
GLN 1830.0106
PHE 1840.0041
ALA 1850.0053
MET 1860.0093
VAL 1870.0132
ASN 1880.0066
ASN 1890.0080
GLY 1900.0057
PRO 1910.0085
GLY 1920.0065
PRO 1930.0046
GLY 1940.0046
GLU 1950.0043
SER 1960.0188
PHE 1970.0113
THR 1980.0161
ALA 1990.0217
GLN 2000.0092
PRO 2010.0105
ALA 2020.0100
ASP 2030.0057
MET 2040.0036
GLN 2050.0042
ALA 2060.0193
GLY 2070.0327
ILE 2080.0331
LYS 2090.0356
GLY 2100.0546
PRO 2110.0274
GLY 2120.0218
PRO 2130.0286
GLY 2140.0345
GLY 2150.0437
SER 2160.0516
ILE 2170.0383
GLN 2180.0360
VAL 2190.0215
ILE 2200.0204
ASN 2210.0541
GLY 2220.0514
SER 2230.0381
THR 2240.0382
ILE 2250.0364
GLY 2260.0461
THR 2270.0444
GLY 2280.0281
SER 2290.0275
LYS 2300.0194
LYS 2310.0210
THR 2320.0154
ILE 2330.0150
LEU 2340.0116
ILE 2350.0136
TYR 2360.0173
SER 2370.0208
ILE 2380.0179
ILE 2390.0184
GLY 2400.0192
VAL 2410.0206
LYS 2420.0171
LYS 2430.0323
GLY 2440.0329
THR 2450.0185
LEU 2460.0106
ALA 2470.0104
TRP 2480.0122
ALA 2490.0187
ARG 2500.0232
THR 2510.0333
GLY 2520.0285
PHE 2530.0136
SER 2540.0168
PRO 2550.0238
ALA 2560.0600
LYS 2570.0611
LYS 2580.0453
LEU 2590.0299
ASN 2600.0177
ALA 2610.0271
GLY 2620.0217
VAL 2630.0143
VAL 2640.0180
ARG 2650.0175
VAL 2660.0189
PHE 2670.0189
PHE 2680.0179
LEU 2690.0189
ASN 2700.0182
GLN 2710.0092
LYS 2720.0191
LYS 2730.0236
ALA 2740.0140
LYS 2750.0024
ASP 2760.0077
VAL 2770.0127
LEU 2780.0142
ARG 2790.0123
LYS 2800.0075
THR 2810.0097
SER 2820.0066
ARG 2830.0017
PRO 2840.0048
MET 2850.0113
VAL 2860.0228
ASP 2870.0145
LEU 2880.0099
THR 2890.0085
PHE 2900.0134
GLY 2910.0152
GLY 2920.0252

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.