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***  TLR_3_simulation  ***

<R2> analysis for 2608260325273940753

---  normal mode 88  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0763
THR 260.0054
LYS 270.0040
CYS 280.0042
THR 290.0049
VAL 300.0042
SER 310.0050
HIS 320.0053
GLU 330.0050
VAL 340.0059
ALA 350.0023
ASP 360.0044
CYS 370.0037
SER 380.0046
HIS 390.0049
LEU 400.0040
LYS 410.0036
LEU 420.0022
THR 430.0027
GLN 440.0032
VAL 450.0036
PRO 460.0049
ASP 470.0071
ASP 480.0079
LEU 490.0069
PRO 500.0090
THR 510.0104
ASN 520.0107
ILE 530.0085
THR 540.0097
VAL 550.0081
LEU 560.0046
ASN 570.0042
LEU 580.0028
THR 590.0040
HIS 600.0041
ASN 610.0024
GLN 620.0026
LEU 630.0015
ARG 640.0017
ARG 650.0015
LEU 660.0026
PRO 670.0034
ALA 680.0048
ALA 690.0063
ASN 700.0064
PHE 710.0067
THR 720.0089
ARG 730.0097
TYR 740.0088
SER 750.0105
GLN 760.0105
LEU 770.0087
THR 780.0096
SER 790.0080
LEU 800.0058
ASP 810.0046
VAL 820.0036
GLY 830.0041
PHE 840.0039
ASN 850.0028
THR 860.0025
ILE 870.0026
SER 880.0033
LYS 890.0033
LEU 900.0037
GLU 910.0034
PRO 920.0042
GLU 930.0040
LEU 940.0047
CYS 950.0058
GLN 960.0059
LYS 970.0061
LEU 980.0067
PRO 990.0076
MET 1000.0084
LEU 1010.0056
LYS 1020.0068
VAL 1030.0062
LEU 1040.0050
ASN 1050.0047
LEU 1060.0038
GLN 1070.0040
HIS 1080.0039
ASN 1090.0036
GLU 1100.0036
LEU 1110.0045
SER 1120.0047
GLN 1130.0054
LEU 1140.0058
SER 1150.0066
ASP 1160.0067
LYS 1170.0067
THR 1180.0063
PHE 1190.0062
ALA 1200.0067
PHE 1210.0063
CYS 1220.0060
THR 1230.0063
ASN 1240.0061
LEU 1250.0058
THR 1260.0052
GLU 1270.0049
LEU 1280.0046
HIS 1290.0043
LEU 1300.0042
MET 1310.0037
SER 1320.0039
ASN 1330.0042
SER 1340.0041
ILE 1350.0038
GLN 1360.0043
LYS 1370.0048
ILE 1380.0051
LYS 1390.0060
ASN 1400.0064
ASN 1410.0059
PRO 1420.0062
PHE 1430.0055
VAL 1440.0054
LYS 1450.0060
GLN 1460.0057
LYS 1470.0054
ASN 1480.0055
LEU 1490.0047
ILE 1500.0041
THR 1510.0040
LEU 1520.0038
ASP 1530.0036
LEU 1540.0034
SER 1550.0031
HIS 1560.0033
ASN 1570.0037
GLY 1580.0041
LEU 1590.0034
SER 1600.0039
SER 1610.0045
THR 1620.0036
LYS 1630.0043
LEU 1640.0046
GLY 1650.0051
THR 1660.0055
GLN 1670.0045
VAL 1680.0037
GLN 1690.0038
LEU 1700.0037
GLU 1710.0035
ASN 1720.0042
LEU 1730.0036
GLN 1740.0039
GLU 1750.0035
LEU 1760.0032
LEU 1770.0034
LEU 1780.0029
SER 1790.0030
ASN 1800.0030
ASN 1810.0029
LYS 1820.0033
ILE 1830.0033
GLN 1840.0042
ALA 1850.0046
LEU 1860.0048
LYS 1870.0060
SER 1880.0063
GLU 1890.0069
GLU 1900.0055
LEU 1910.0046
ASP 1920.0051
ILE 1930.0044
PHE 1940.0034
ALA 1950.0040
ASN 1960.0033
SER 1970.0033
SER 1980.0042
LEU 1990.0042
LYS 2000.0051
LYS 2010.0047
LEU 2020.0043
GLU 2030.0047
LEU 2040.0044
SER 2050.0051
SER 2060.0051
ASN 2070.0045
GLN 2080.0044
ILE 2090.0042
LYS 2100.0044
GLU 2110.0050
PHE 2120.0052
SER 2130.0062
PRO 2140.0074
GLY 2150.0075
CYS 2160.0059
PHE 2170.0057
HIS 2180.0063
ALA 2190.0059
ILE 2200.0053
GLY 2210.0057
ARG 2220.0056
LEU 2230.0056
PHE 2240.0058
GLY 2250.0057
LEU 2260.0057
PHE 2270.0064
LEU 2280.0067
ASN 2290.0077
ASN 2300.0083
VAL 2310.0081
GLN 2320.0085
LEU 2330.0074
GLY 2340.0076
PRO 2350.0068
SER 2360.0072
LEU 2370.0066
THR 2380.0063
GLU 2390.0061
LYS 2400.0057
LEU 2410.0058
CYS 2420.0057
LEU 2430.0057
GLU 2440.0057
LEU 2450.0057
ALA 2460.0056
ASN 2470.0057
THR 2480.0058
SER 2490.0059
ILE 2500.0058
ARG 2510.0049
ASN 2520.0056
LEU 2530.0059
SER 2540.0067
LEU 2550.0072
SER 2560.0074
ASN 2570.0085
SER 2580.0085
GLN 2590.0090
LEU 2600.0081
SER 2610.0086
THR 2620.0078
THR 2630.0065
SER 2640.0071
ASN 2650.0068
THR 2660.0065
THR 2670.0061
PHE 2680.0048
LEU 2690.0048
GLY 2700.0044
LEU 2710.0040
LYS 2720.0040
TRP 2730.0038
THR 2740.0039
ASN 2750.0042
LEU 2760.0028
THR 2770.0033
MET 2780.0038
LEU 2790.0039
ASP 2800.0051
LEU 2810.0061
SER 2820.0060
TYR 2830.0063
ASN 2840.0067
ASN 2850.0062
LEU 2860.0055
ASN 2870.0062
VAL 2880.0062
VAL 2890.0050
GLY 2900.0059
ASN 2910.0075
ASP 2920.0067
SER 2930.0056
PHE 2940.0039
ALA 2950.0052
TRP 2960.0041
LEU 2970.0030
PRO 2980.0040
GLN 2990.0036
LEU 3000.0025
GLU 3010.0037
TYR 3020.0031
PHE 3030.0016
PHE 3040.0027
LEU 3050.0032
GLU 3060.0040
TYR 3070.0040
ASN 3080.0040
ASN 3090.0037
ILE 3100.0036
GLN 3110.0043
HIS 3120.0041
LEU 3130.0032
PHE 3140.0047
SER 3150.0054
HIS 3160.0071
SER 3170.0053
LEU 3180.0042
HIS 3190.0061
GLY 3200.0062
LEU 3210.0050
PHE 3220.0067
ASN 3230.0062
VAL 3240.0047
ARG 3250.0057
TYR 3260.0036
LEU 3270.0020
ASN 3280.0011
LEU 3290.0006
LYS 3300.0017
ARG 3310.0026
SER 3320.0027
PHE 3330.0022
THR 3340.0019
LYS 3350.0016
GLN 3360.0021
SER 3370.0017
ILE 3380.0022
SER 3390.0015
LEU 3400.0005
ALA 3410.0016
SER 3420.0017
LEU 3430.0019
PRO 3440.0022
LYS 3450.0022
ILE 3460.0028
ASP 3470.0043
ASP 3480.0049
PHE 3490.0055
SER 3500.0045
PHE 3510.0048
GLN 3520.0070
TRP 3530.0070
LEU 3540.0062
LYS 3550.0083
CYS 3560.0081
LEU 3570.0065
GLU 3580.0071
HIS 3590.0059
LEU 3600.0041
ASN 3610.0027
MET 3620.0018
GLU 3630.0025
ASP 3640.0029
ASN 3650.0024
ASP 3660.0018
ILE 3670.0016
PRO 3680.0017
GLY 3690.0018
ILE 3700.0020
LYS 3710.0010
SER 3720.0021
ASN 3730.0033
MET 3740.0025
PHE 3750.0039
THR 3760.0054
GLY 3770.0067
LEU 3780.0065
ILE 3790.0081
ASN 3800.0084
LEU 3810.0063
LYS 3820.0071
TYR 3830.0066
LEU 3840.0050
SER 3850.0051
LEU 3860.0041
SER 3870.0048
ASN 3880.0045
SER 3890.0037
PHE 3900.0034
THR 3910.0033
SER 3920.0039
LEU 3930.0045
ARG 3940.0050
THR 3950.0056
LEU 3960.0053
THR 3970.0052
ASN 3980.0054
GLU 3990.0045
THR 4000.0045
PHE 4010.0039
VAL 4020.0033
SER 4030.0035
LEU 4040.0047
ALA 4050.0049
HIS 4060.0048
SER 4070.0051
PRO 4080.0060
LEU 4090.0057
HIS 4100.0066
ILE 4110.0061
LEU 4120.0054
ASN 4130.0057
LEU 4140.0053
THR 4150.0061
LYS 4160.0057
ASN 4170.0056
LYS 4180.0057
ILE 4190.0056
SER 4200.0056
LYS 4210.0059
ILE 4220.0059
GLU 4230.0060
SER 4240.0060
ASP 4250.0061
ALA 4260.0054
PHE 4270.0056
SER 4280.0055
TRP 4290.0052
LEU 4300.0056
GLY 4310.0048
HIS 4320.0048
LEU 4330.0049
GLU 4340.0051
VAL 4350.0051
LEU 4360.0050
ASP 4370.0051
LEU 4380.0051
GLY 4390.0051
LEU 4400.0052
ASN 4410.0057
GLU 4420.0057
ILE 4430.0053
GLY 4440.0052
GLN 4450.0050
GLU 4460.0046
LEU 4470.0039
THR 4480.0041
GLY 4490.0040
GLN 4500.0052
GLU 4510.0052
TRP 4520.0050
ARG 4530.0054
GLY 4540.0057
LEU 4550.0053
GLU 4560.0047
ASN 4570.0045
ILE 4580.0037
PHE 4590.0030
GLU 4600.0025
ILE 4610.0031
TYR 4620.0028
LEU 4630.0027
SER 4640.0022
TYR 4650.0021
ASN 4660.0035
LYS 4670.0045
TYR 4680.0040
LEU 4690.0028
GLN 4700.0028
LEU 4710.0027
THR 4720.0026
ARG 4730.0022
ASN 4740.0023
SER 4750.0026
PHE 4760.0025
ALA 4770.0029
LEU 4780.0038
VAL 4790.0039
PRO 4800.0041
SER 4810.0037
LEU 4820.0028
GLN 4830.0030
ARG 4840.0023
LEU 4850.0015
MET 4860.0025
LEU 4870.0019
ARG 4880.0021
ARG 4890.0019
VAL 4900.0019
ALA 4910.0032
LEU 4920.0029
LYS 4930.0034
ASN 4940.0035
VAL 4950.0040
ASP 4960.0049
SER 4970.0046
SER 4980.0051
PRO 4990.0048
SER 5000.0045
PRO 5010.0027
PHE 5020.0031
GLN 5030.0036
PRO 5040.0034
LEU 5050.0036
ARG 5060.0032
ASN 5070.0038
LEU 5080.0028
THR 5090.0043
ILE 5100.0041
LEU 5110.0045
ASP 5120.0047
LEU 5130.0045
SER 5140.0049
ASN 5150.0049
ASN 5160.0054
ASN 5170.0053
ILE 5180.0054
ALA 5190.0053
ASN 5200.0054
ILE 5210.0059
ASN 5220.0057
ASP 5230.0055
ASP 5240.0056
MET 5250.0058
LEU 5260.0052
GLU 5270.0052
GLY 5280.0052
LEU 5290.0052
GLU 5300.0055
LYS 5310.0054
LEU 5320.0054
GLU 5330.0062
ILE 5340.0064
LEU 5350.0062
ASP 5360.0065
LEU 5370.0062
GLN 5380.0066
HIS 5390.0071
ASN 5400.0068
ASN 5410.0078
LEU 5420.0068
ALA 5430.0062
ARG 5440.0072
LEU 5450.0065
TRP 5460.0060
LYS 5470.0077
HIS 5480.0082
ALA 5490.0106
ASN 5500.0103
PRO 5510.0127
GLY 5520.0110
GLY 5530.0084
PRO 5540.0059
ILE 5550.0059
TYR 5560.0041
PHE 5570.0052
LEU 5580.0048
LYS 5590.0039
GLY 5600.0045
LEU 5610.0056
SER 5620.0057
HIS 5630.0068
LEU 5640.0065
HIS 5650.0071
ILE 5660.0062
LEU 5670.0051
ASN 5680.0057
LEU 5690.0052
GLU 5700.0060
SER 5710.0067
ASN 5720.0067
GLY 5730.0068
PHE 5740.0051
ASP 5750.0058
GLU 5760.0060
ILE 5770.0040
PRO 5780.0039
VAL 5790.0033
GLU 5800.0016
VAL 5810.0020
PHE 5820.0017
LYS 5830.0020
ASP 5840.0036
LEU 5850.0043
PHE 5860.0066
GLU 5870.0078
LEU 5880.0062
LYS 5890.0062
ILE 5900.0054
ILE 5910.0022
ASP 5920.0028
LEU 5930.0024
GLY 5940.0034
LEU 5950.0050
ASN 5960.0049
ASN 5970.0061
LEU 5980.0051
ASN 5990.0064
THR 6000.0070
LEU 6010.0066
PRO 6020.0073
ALA 6030.0078
SER 6040.0067
VAL 6050.0046
PHE 6060.0035
ASN 6070.0057
ASN 6080.0053
GLN 6090.0047
VAL 6100.0072
SER 6110.0068
LEU 6120.0045
LYS 6130.0040
SER 6140.0021
LEU 6150.0013
ASN 6160.0020
LEU 6170.0027
GLN 6180.0026
LYS 6190.0034
ASN 6200.0039
LEU 6210.0059
ILE 6220.0058
THR 6230.0062
SER 6240.0063
VAL 6250.0058
GLU 6260.0072
LYS 6270.0071
LYS 6280.0079
VAL 6290.0071
PHE 6300.0061
GLY 6310.0067
PRO 6320.0061
ALA 6330.0045
PHE 6340.0048
ARG 6350.0055
ASN 6360.0053
LEU 6370.0039
THR 6380.0031
GLU 6390.0024
LEU 6400.0032
ASP 6410.0045
MET 6420.0046
ARG 6430.0045
PHE 6440.0045
ASN 6450.0047
PRO 6460.0071
PHE 6470.0049
ASP 6480.0040
CYS 6490.0029
THR 6500.0028
CYS 6510.0026
GLU 6520.0018
SER 6530.0035
ILE 6540.0031
ALA 6550.0038
TRP 6560.0039
PHE 6570.0042
VAL 6580.0039
ASN 6590.0043
TRP 6600.0050
ILE 6610.0055
ASN 6620.0052
GLU 6630.0062
THR 6640.0074
HIS 6650.0090
THR 6660.0059
ASN 6670.0063
ILE 6680.0058
PRO 6690.0062
GLU 6700.0057
LEU 6710.0054
SER 6720.0048
SER 6730.0054
HIS 6740.0058
TYR 6750.0050
LEU 6760.0064
CYS 6770.0064
ASN 6780.0101
THR 6790.0101
PRO 6800.0109
PRO 6810.0176
HIS 6820.0168
TYR 6830.0117
HIS 6840.0138
GLY 6850.0120
PHE 6860.0079
PRO 6870.0054
VAL 6880.0036
ARG 6890.0023
LEU 6900.0033
PHE 6910.0056
ASP 6920.0102
THR 6930.0119
SER 6940.0189
SER 6950.0196
CYS 6960.0190
GLU 10.0165
ALA 20.0162
ALA 30.0142
ALA 40.0080
LYS 50.0069
MET 60.0075
GLN 70.0058
ARG 80.0025
LEU 90.0044
VAL 100.0072
LEU 110.0043
LEU 120.0037
LEU 130.0053
ALA 140.0063
ILE 150.0058
SER 160.0066
LEU 170.0086
LEU 180.0085
LEU 190.0085
TYR 200.0101
GLN 210.0112
ASP 220.0117
LEU 230.0111
PRO 240.0104
VAL 250.0099
ARG 260.0139
SER 270.0121
GLU 280.0097
PHE 290.0088
GLU 300.0100
LEU 310.0074
ASP 320.0026
ARG 330.0027
ILE 340.0024
CYS 350.0043
GLY 360.0155
TYR 370.0219
GLY 380.0154
THR 390.0092
ALA 400.0030
ARG 410.0027
CYS 420.0034
ARG 430.0048
LYS 440.0061
LYS 450.0070
CYS 460.0097
ARG 470.0107
SER 480.0130
GLN 490.0103
GLU 500.0087
TYR 510.0094
ARG 520.0084
ILE 530.0087
GLY 540.0076
ARG 550.0065
CYS 560.0047
PRO 570.0044
ASN 580.0041
THR 590.0059
TYR 600.0057
ALA 610.0088
CYS 620.0072
CYS 630.0070
LEU 640.0060
ARG 650.0059
LYS 660.0113
TRP 670.0101
ASP 680.0094
GLU 690.0095
SER 700.0124
LEU 710.0127
LEU 720.0126
ASN 730.0144
ARG 740.0157
THR 750.0155
LYS 760.0174
PRO 770.0195
GLU 780.0210
ALA 790.0192
ALA 800.0221
ALA 810.0216
LYS 820.0210
LYS 830.0138
GLU 840.0156
MET 850.0107
ASN 860.0095
LEU 870.0118
SER 880.0110
VAL 890.0121
GLY 900.0130
LEU 910.0143
GLY 920.0408
GLY 930.0725
GLY 940.0763
SER 950.0503
ASN 960.0150
LEU 970.0111
SER 980.0109
VAL 990.0104
GLY 1000.0102
LEU 1010.0167
GLY 1020.0225
GLU 1030.0193
ILE 1040.0212
GLY 1050.0185
GLY 1060.0194
GLY 1070.0174
SER 1080.0165
LYS 1090.0137
LEU 1100.0137
LEU 1110.0110
ASP 1120.0084
ILE 1130.0080
ASN 1140.0078
LEU 1150.0069
GLY 1160.0053
ARG 1170.0088
GLY 1180.0074
GLY 1190.0118
GLY 1200.0145
SER 1210.0132
MET 1220.0139
VAL 1230.0119
ASP 1240.0120
LEU 1250.0107
THR 1260.0125
PHE 1270.0108
GLY 1280.0140
GLY 1290.0165
VAL 1300.0176
GLY 1310.0207
GLY 1320.0201
GLY 1330.0178
SER 1340.0207
THR 1350.0197
PHE 1360.0150
THR 1370.0115
PHE 1380.0101
PHE 1390.0073
PRO 1400.0084
LEU 1410.0138
VAL 1420.0205
ILE 1430.0178
GLY 1440.0211
GLY 1450.0304
GLY 1460.0462
SER 1470.0392
ASP 1480.0260
ALA 1490.0276
MET 1500.0180
TYR 1510.0128
LEU 1520.0138
GLY 1530.0125
PHE 1540.0154
ALA 1550.0154
ALA 1560.0231
GLY 1570.0213
GLY 1580.0183
GLY 1590.0167
SER 1600.0146
ALA 1610.0221
GLY 1620.0235
GLY 1630.0216
GLU 1640.0195
ASN 1650.0155
HIS 1660.0160
VAL 1670.0135
ALA 1680.0160
PHE 1690.0166
GLY 1700.0197
PRO 1710.0240
GLY 1720.0292
PRO 1730.0400
GLY 1740.0196
VAL 1750.0106
ASP 1760.0164
LEU 1770.0101
THR 1780.0185
PHE 1790.0220
GLY 1800.0324
GLY 1810.0459
VAL 1820.0322
GLN 1830.0193
PHE 1840.0065
ALA 1850.0162
MET 1860.0403
VAL 1870.0537
ASN 1880.0233
ASN 1890.0254
GLY 1900.0218
PRO 1910.0225
GLY 1920.0233
PRO 1930.0167
GLY 1940.0138
GLU 1950.0179
SER 1960.0455
PHE 1970.0288
THR 1980.0091
ALA 1990.0147
GLN 2000.0317
PRO 2010.0237
ALA 2020.0193
ASP 2030.0324
MET 2040.0261
GLN 2050.0222
ALA 2060.0157
GLY 2070.0148
ILE 2080.0167
LYS 2090.0192
GLY 2100.0261
PRO 2110.0153
GLY 2120.0142
PRO 2130.0140
GLY 2140.0170
GLY 2150.0161
SER 2160.0203
ILE 2170.0207
GLN 2180.0197
VAL 2190.0088
ILE 2200.0162
ASN 2210.0730
GLY 2220.0607
SER 2230.0430
THR 2240.0439
ILE 2250.0383
GLY 2260.0251
THR 2270.0266
GLY 2280.0229
SER 2290.0213
LYS 2300.0117
LYS 2310.0203
THR 2320.0194
ILE 2330.0112
LEU 2340.0107
ILE 2350.0124
TYR 2360.0145
SER 2370.0192
ILE 2380.0184
ILE 2390.0178
GLY 2400.0193
VAL 2410.0205
LYS 2420.0120
LYS 2430.0186
GLY 2440.0205
THR 2450.0125
LEU 2460.0109
ALA 2470.0094
TRP 2480.0093
ALA 2490.0151
ARG 2500.0176
THR 2510.0158
GLY 2520.0119
PHE 2530.0061
SER 2540.0130
PRO 2550.0174
ALA 2560.0545
LYS 2570.0539
LYS 2580.0379
LEU 2590.0215
ASN 2600.0086
ALA 2610.0315
GLY 2620.0242
VAL 2630.0199
VAL 2640.0217
ARG 2650.0162
VAL 2660.0106
PHE 2670.0095
PHE 2680.0069
LEU 2690.0088
ASN 2700.0110
GLN 2710.0077
LYS 2720.0072
LYS 2730.0096
ALA 2740.0053
LYS 2750.0023
ASP 2760.0058
VAL 2770.0042
LEU 2780.0045
ARG 2790.0063
LYS 2800.0045
THR 2810.0065
SER 2820.0087
ARG 2830.0035
PRO 2840.0042
MET 2850.0066
VAL 2860.0100
ASP 2870.0064
LEU 2880.0041
THR 2890.0040
PHE 2900.0076
GLY 2910.0076
GLY 2920.0105

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.