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***  TLR_3_simulation  ***

<R2> analysis for 2608260325273940753

---  normal mode 89  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0821
THR 260.0074
LYS 270.0069
CYS 280.0058
THR 290.0054
VAL 300.0059
SER 310.0082
HIS 320.0085
GLU 330.0045
VAL 340.0067
ALA 350.0031
ASP 360.0037
CYS 370.0040
SER 380.0049
HIS 390.0059
LEU 400.0063
LYS 410.0072
LEU 420.0071
THR 430.0065
GLN 440.0068
VAL 450.0072
PRO 460.0068
ASP 470.0076
ASP 480.0067
LEU 490.0067
PRO 500.0073
THR 510.0085
ASN 520.0084
ILE 530.0079
THR 540.0091
VAL 550.0085
LEU 560.0061
ASN 570.0059
LEU 580.0062
THR 590.0063
HIS 600.0063
ASN 610.0069
GLN 620.0060
LEU 630.0053
ARG 640.0043
ARG 650.0039
LEU 660.0060
PRO 670.0062
ALA 680.0069
ALA 690.0077
ASN 700.0082
PHE 710.0087
THR 720.0096
ARG 730.0097
TYR 740.0095
SER 750.0104
GLN 760.0102
LEU 770.0090
THR 780.0092
SER 790.0081
LEU 800.0067
ASP 810.0054
VAL 820.0049
GLY 830.0049
PHE 840.0049
ASN 850.0045
THR 860.0042
ILE 870.0041
SER 880.0033
LYS 890.0030
LEU 900.0041
GLU 910.0038
PRO 920.0039
GLU 930.0042
LEU 940.0059
CYS 950.0063
GLN 960.0063
LYS 970.0068
LEU 980.0073
PRO 990.0075
MET 1000.0083
LEU 1010.0053
LYS 1020.0065
VAL 1030.0064
LEU 1040.0047
ASN 1050.0049
LEU 1060.0048
GLN 1070.0055
HIS 1080.0057
ASN 1090.0051
GLU 1100.0050
LEU 1110.0070
SER 1120.0071
GLN 1130.0070
LEU 1140.0072
SER 1150.0073
ASP 1160.0066
LYS 1170.0066
THR 1180.0067
PHE 1190.0067
ALA 1200.0066
PHE 1210.0054
CYS 1220.0055
THR 1230.0057
ASN 1240.0058
LEU 1250.0057
THR 1260.0057
GLU 1270.0060
LEU 1280.0059
HIS 1290.0063
LEU 1300.0064
MET 1310.0069
SER 1320.0073
ASN 1330.0072
SER 1340.0073
ILE 1350.0069
GLN 1360.0073
LYS 1370.0071
ILE 1380.0069
LYS 1390.0077
ASN 1400.0077
ASN 1410.0070
PRO 1420.0073
PHE 1430.0065
VAL 1440.0062
LYS 1450.0066
GLN 1460.0061
LYS 1470.0053
ASN 1480.0053
LEU 1490.0051
ILE 1500.0045
THR 1510.0056
LEU 1520.0057
ASP 1530.0060
LEU 1540.0060
SER 1550.0061
HIS 1560.0067
ASN 1570.0065
GLY 1580.0060
LEU 1590.0050
SER 1600.0043
SER 1610.0026
THR 1620.0018
LYS 1630.0033
LEU 1640.0044
GLY 1650.0054
THR 1660.0065
GLN 1670.0055
VAL 1680.0037
GLN 1690.0035
LEU 1700.0032
GLU 1710.0015
ASN 1720.0030
LEU 1730.0029
GLN 1740.0040
GLU 1750.0042
LEU 1760.0033
LEU 1770.0042
LEU 1780.0030
SER 1790.0041
ASN 1800.0043
ASN 1810.0038
LYS 1820.0023
ILE 1830.0013
GLN 1840.0015
ALA 1850.0024
LEU 1860.0035
LYS 1870.0043
SER 1880.0050
GLU 1890.0044
GLU 1900.0018
LEU 1910.0023
ASP 1920.0035
ILE 1930.0017
PHE 1940.0017
ALA 1950.0034
ASN 1960.0030
SER 1970.0030
SER 1980.0054
LEU 1990.0054
LYS 2000.0076
LYS 2010.0068
LEU 2020.0055
GLU 2030.0058
LEU 2040.0049
SER 2050.0062
SER 2060.0058
ASN 2070.0048
GLN 2080.0049
ILE 2090.0049
LYS 2100.0053
GLU 2110.0060
PHE 2120.0065
SER 2130.0063
PRO 2140.0081
GLY 2150.0077
CYS 2160.0068
PHE 2170.0073
HIS 2180.0074
ALA 2190.0062
ILE 2200.0061
GLY 2210.0073
ARG 2220.0084
LEU 2230.0086
PHE 2240.0099
GLY 2250.0095
LEU 2260.0087
PHE 2270.0087
LEU 2280.0087
ASN 2290.0090
ASN 2300.0089
VAL 2310.0091
GLN 2320.0091
LEU 2330.0087
GLY 2340.0082
PRO 2350.0077
SER 2360.0083
LEU 2370.0086
THR 2380.0083
GLU 2390.0082
LYS 2400.0086
LEU 2410.0091
CYS 2420.0090
LEU 2430.0091
GLU 2440.0094
LEU 2450.0093
ALA 2460.0096
ASN 2470.0100
THR 2480.0104
SER 2490.0103
ILE 2500.0099
ARG 2510.0089
ASN 2520.0090
LEU 2530.0089
SER 2540.0088
LEU 2550.0086
SER 2560.0079
ASN 2570.0083
SER 2580.0087
GLN 2590.0083
LEU 2600.0075
SER 2610.0063
THR 2620.0055
THR 2630.0046
SER 2640.0059
ASN 2650.0060
THR 2660.0070
THR 2670.0066
PHE 2680.0056
LEU 2690.0062
GLY 2700.0077
LEU 2710.0067
LYS 2720.0059
TRP 2730.0073
THR 2740.0072
ASN 2750.0065
LEU 2760.0051
THR 2770.0050
MET 2780.0058
LEU 2790.0052
ASP 2800.0060
LEU 2810.0051
SER 2820.0051
TYR 2830.0055
ASN 2840.0055
ASN 2850.0047
LEU 2860.0031
ASN 2870.0031
VAL 2880.0038
VAL 2890.0030
GLY 2900.0048
ASN 2910.0065
ASP 2920.0058
SER 2930.0037
PHE 2940.0017
ALA 2950.0039
TRP 2960.0026
LEU 2970.0008
PRO 2980.0022
GLN 2990.0027
LEU 3000.0033
GLU 3010.0062
TYR 3020.0062
PHE 3030.0039
PHE 3040.0043
LEU 3050.0024
GLU 3060.0023
TYR 3070.0024
ASN 3080.0020
ASN 3090.0018
ILE 3100.0018
GLN 3110.0023
HIS 3120.0037
LEU 3130.0043
PHE 3140.0060
SER 3150.0077
HIS 3160.0079
SER 3170.0051
LEU 3180.0054
HIS 3190.0071
GLY 3200.0070
LEU 3210.0068
PHE 3220.0090
ASN 3230.0090
VAL 3240.0081
ARG 3250.0099
TYR 3260.0081
LEU 3270.0063
ASN 3280.0054
LEU 3290.0039
LYS 3300.0041
ARG 3310.0021
SER 3320.0020
PHE 3330.0019
THR 3340.0017
LYS 3350.0017
GLN 3360.0020
SER 3370.0010
ILE 3380.0022
SER 3390.0024
LEU 3400.0017
ALA 3410.0006
SER 3420.0008
LEU 3430.0019
PRO 3440.0029
LYS 3450.0039
ILE 3460.0051
ASP 3470.0063
ASP 3480.0075
PHE 3490.0086
SER 3500.0077
PHE 3510.0087
GLN 3520.0106
TRP 3530.0099
LEU 3540.0099
LYS 3550.0120
CYS 3560.0120
LEU 3570.0107
GLU 3580.0112
HIS 3590.0101
LEU 3600.0086
ASN 3610.0065
MET 3620.0052
GLU 3630.0052
ASP 3640.0045
ASN 3650.0035
ASP 3660.0035
ILE 3670.0036
PRO 3680.0031
GLY 3690.0036
ILE 3700.0043
LYS 3710.0048
SER 3720.0055
ASN 3730.0066
MET 3740.0065
PHE 3750.0077
THR 3760.0090
GLY 3770.0101
LEU 3780.0102
ILE 3790.0111
ASN 3800.0115
LEU 3810.0088
LYS 3820.0090
TYR 3830.0085
LEU 3840.0070
SER 3850.0067
LEU 3860.0048
SER 3870.0051
ASN 3880.0048
SER 3890.0045
PHE 3900.0039
THR 3910.0040
SER 3920.0038
LEU 3930.0038
ARG 3940.0039
THR 3950.0038
LEU 3960.0041
THR 3970.0037
ASN 3980.0041
GLU 3990.0026
THR 4000.0031
PHE 4010.0035
VAL 4020.0027
SER 4030.0043
LEU 4040.0052
ALA 4050.0043
HIS 4060.0043
SER 4070.0051
PRO 4080.0054
LEU 4090.0056
HIS 4100.0063
ILE 4110.0058
LEU 4120.0046
ASN 4130.0049
LEU 4140.0038
THR 4150.0047
LYS 4160.0048
ASN 4170.0044
LYS 4180.0045
ILE 4190.0041
SER 4200.0041
LYS 4210.0047
ILE 4220.0052
GLU 4230.0054
SER 4240.0063
ASP 4250.0064
ALA 4260.0047
PHE 4270.0052
SER 4280.0052
TRP 4290.0042
LEU 4300.0052
GLY 4310.0052
HIS 4320.0052
LEU 4330.0054
GLU 4340.0066
VAL 4350.0066
LEU 4360.0060
ASP 4370.0054
LEU 4380.0048
GLY 4390.0045
LEU 4400.0038
ASN 4410.0039
GLU 4420.0039
ILE 4430.0041
GLY 4440.0040
GLN 4450.0042
GLU 4460.0040
LEU 4470.0047
THR 4480.0056
GLY 4490.0064
GLN 4500.0073
GLU 4510.0062
TRP 4520.0070
ARG 4530.0078
GLY 4540.0083
LEU 4550.0081
GLU 4560.0091
ASN 4570.0093
ILE 4580.0081
PHE 4590.0085
GLU 4600.0075
ILE 4610.0069
TYR 4620.0061
LEU 4630.0044
SER 4640.0042
TYR 4650.0038
ASN 4660.0025
LYS 4670.0024
TYR 4680.0024
LEU 4690.0023
GLN 4700.0023
LEU 4710.0027
THR 4720.0032
ARG 4730.0037
ASN 4740.0055
SER 4750.0053
PHE 4760.0060
ALA 4770.0068
LEU 4780.0078
VAL 4790.0081
PRO 4800.0086
SER 4810.0086
LEU 4820.0076
GLN 4830.0081
ARG 4840.0075
LEU 4850.0060
MET 4860.0063
LEU 4870.0046
ARG 4880.0061
ARG 4890.0059
VAL 4900.0038
ALA 4910.0040
LEU 4920.0035
LYS 4930.0027
ASN 4940.0022
VAL 4950.0039
ASP 4960.0032
SER 4970.0017
SER 4980.0010
PRO 4990.0023
SER 5000.0035
PRO 5010.0039
PHE 5020.0048
GLN 5030.0045
PRO 5040.0054
LEU 5050.0063
ARG 5060.0053
ASN 5070.0062
LEU 5080.0055
THR 5090.0068
ILE 5100.0062
LEU 5110.0061
ASP 5120.0071
LEU 5130.0063
SER 5140.0083
ASN 5150.0093
ASN 5160.0094
ASN 5170.0096
ILE 5180.0083
ALA 5190.0081
ASN 5200.0071
ILE 5210.0068
ASN 5220.0053
ASP 5230.0046
ASP 5240.0037
MET 5250.0050
LEU 5260.0052
GLU 5270.0044
GLY 5280.0046
LEU 5290.0054
GLU 5300.0054
LYS 5310.0045
LEU 5320.0048
GLU 5330.0057
ILE 5340.0062
LEU 5350.0059
ASP 5360.0081
LEU 5370.0081
GLN 5380.0094
HIS 5390.0106
ASN 5400.0100
ASN 5410.0121
LEU 5420.0102
ALA 5430.0098
ARG 5440.0107
LEU 5450.0096
TRP 5460.0085
LYS 5470.0102
HIS 5480.0118
ALA 5490.0150
ASN 5500.0155
PRO 5510.0220
GLY 5520.0205
GLY 5530.0155
PRO 5540.0099
ILE 5550.0086
TYR 5560.0060
PHE 5570.0062
LEU 5580.0049
LYS 5590.0039
GLY 5600.0032
LEU 5610.0040
SER 5620.0038
HIS 5630.0038
LEU 5640.0039
HIS 5650.0040
ILE 5660.0057
LEU 5670.0055
ASN 5680.0065
LEU 5690.0064
GLU 5700.0074
SER 5710.0091
ASN 5720.0087
GLY 5730.0080
PHE 5740.0063
ASP 5750.0057
GLU 5760.0050
ILE 5770.0040
PRO 5780.0050
VAL 5790.0043
GLU 5800.0038
VAL 5810.0034
PHE 5820.0025
LYS 5830.0030
ASP 5840.0027
LEU 5850.0022
PHE 5860.0023
GLU 5870.0019
LEU 5880.0018
LYS 5890.0026
ILE 5900.0030
ILE 5910.0034
ASP 5920.0041
LEU 5930.0033
GLY 5940.0041
LEU 5950.0045
ASN 5960.0039
ASN 5970.0026
LEU 5980.0019
ASN 5990.0022
THR 6000.0029
LEU 6010.0025
PRO 6020.0032
ALA 6030.0037
SER 6040.0031
VAL 6050.0020
PHE 6060.0025
ASN 6070.0032
ASN 6080.0023
GLN 6090.0019
VAL 6100.0024
SER 6110.0024
LEU 6120.0030
LYS 6130.0038
SER 6140.0041
LEU 6150.0040
ASN 6160.0040
LEU 6170.0040
GLN 6180.0044
LYS 6190.0044
ASN 6200.0041
LEU 6210.0053
ILE 6220.0058
THR 6230.0054
SER 6240.0063
VAL 6250.0071
GLU 6260.0049
LYS 6270.0054
LYS 6280.0052
VAL 6290.0049
PHE 6300.0051
GLY 6310.0053
PRO 6320.0046
ALA 6330.0046
PHE 6340.0054
ARG 6350.0053
ASN 6360.0050
LEU 6370.0051
THR 6380.0051
GLU 6390.0052
LEU 6400.0052
ASP 6410.0052
MET 6420.0054
ARG 6430.0055
PHE 6440.0059
ASN 6450.0059
PRO 6460.0070
PHE 6470.0062
ASP 6480.0069
CYS 6490.0062
THR 6500.0083
CYS 6510.0109
GLU 6520.0129
SER 6530.0105
ILE 6540.0075
ALA 6550.0085
TRP 6560.0059
PHE 6570.0053
VAL 6580.0037
ASN 6590.0037
TRP 6600.0040
ILE 6610.0035
ASN 6620.0018
GLU 6630.0017
THR 6640.0039
HIS 6650.0066
THR 6660.0054
ASN 6670.0052
ILE 6680.0049
PRO 6690.0047
GLU 6700.0042
LEU 6710.0037
SER 6720.0033
SER 6730.0039
HIS 6740.0045
TYR 6750.0042
LEU 6760.0043
CYS 6770.0047
ASN 6780.0062
THR 6790.0081
PRO 6800.0079
PRO 6810.0070
HIS 6820.0067
TYR 6830.0051
HIS 6840.0041
GLY 6850.0035
PHE 6860.0026
PRO 6870.0024
VAL 6880.0033
ARG 6890.0026
LEU 6900.0041
PHE 6910.0057
ASP 6920.0122
THR 6930.0141
SER 6940.0209
SER 6950.0232
CYS 6960.0230
GLU 10.0094
ALA 20.0080
ALA 30.0038
ALA 40.0035
LYS 50.0048
MET 60.0031
GLN 70.0021
ARG 80.0018
LEU 90.0025
VAL 100.0026
LEU 110.0016
LEU 120.0010
LEU 130.0012
ALA 140.0014
ILE 150.0007
SER 160.0011
LEU 170.0039
LEU 180.0021
LEU 190.0045
TYR 200.0067
GLN 210.0091
ASP 220.0098
LEU 230.0142
PRO 240.0171
VAL 250.0179
ARG 260.0154
SER 270.0141
GLU 280.0096
PHE 290.0129
GLU 300.0107
LEU 310.0038
ASP 320.0035
ARG 330.0019
ILE 340.0019
CYS 350.0019
GLY 360.0280
TYR 370.0424
GLY 380.0308
THR 390.0265
ALA 400.0058
ARG 410.0045
CYS 420.0044
ARG 430.0040
LYS 440.0048
LYS 450.0061
CYS 460.0100
ARG 470.0119
SER 480.0156
GLN 490.0140
GLU 500.0118
TYR 510.0124
ARG 520.0102
ILE 530.0120
GLY 540.0105
ARG 550.0088
CYS 560.0056
PRO 570.0073
ASN 580.0060
THR 590.0049
TYR 600.0035
ALA 610.0081
CYS 620.0086
CYS 630.0088
LEU 640.0099
ARG 650.0101
LYS 660.0230
TRP 670.0216
ASP 680.0246
GLU 690.0193
SER 700.0308
LEU 710.0239
LEU 720.0133
ASN 730.0268
ARG 740.0236
THR 750.0107
LYS 760.0297
PRO 770.0287
GLU 780.0291
ALA 790.0369
ALA 800.0350
ALA 810.0285
LYS 820.0164
LYS 830.0171
GLU 840.0170
MET 850.0165
ASN 860.0129
LEU 870.0086
SER 880.0057
VAL 890.0028
GLY 900.0035
LEU 910.0181
GLY 920.0464
GLY 930.0821
GLY 940.0791
SER 950.0537
ASN 960.0087
LEU 970.0045
SER 980.0072
VAL 990.0141
GLY 1000.0215
LEU 1010.0153
GLY 1020.0149
GLU 1030.0098
ILE 1040.0083
GLY 1050.0069
GLY 1060.0138
GLY 1070.0114
SER 1080.0134
LYS 1090.0135
LEU 1100.0160
LEU 1110.0236
ASP 1120.0252
ILE 1130.0202
ASN 1140.0236
LEU 1150.0187
GLY 1160.0319
ARG 1170.0435
GLY 1180.0381
GLY 1190.0356
GLY 1200.0285
SER 1210.0114
MET 1220.0103
VAL 1230.0063
ASP 1240.0067
LEU 1250.0063
THR 1260.0093
PHE 1270.0103
GLY 1280.0132
GLY 1290.0153
VAL 1300.0165
GLY 1310.0194
GLY 1320.0184
GLY 1330.0141
SER 1340.0150
THR 1350.0112
PHE 1360.0101
THR 1370.0088
PHE 1380.0066
PHE 1390.0058
PRO 1400.0036
LEU 1410.0082
VAL 1420.0134
ILE 1430.0146
GLY 1440.0195
GLY 1450.0231
GLY 1460.0194
SER 1470.0172
ASP 1480.0127
ALA 1490.0150
MET 1500.0125
TYR 1510.0057
LEU 1520.0023
GLY 1530.0035
PHE 1540.0075
ALA 1550.0123
ALA 1560.0186
GLY 1570.0154
GLY 1580.0127
GLY 1590.0082
SER 1600.0055
ALA 1610.0068
GLY 1620.0081
GLY 1630.0078
GLU 1640.0085
ASN 1650.0057
HIS 1660.0089
VAL 1670.0104
ALA 1680.0115
PHE 1690.0130
GLY 1700.0153
PRO 1710.0260
GLY 1720.0299
PRO 1730.0322
GLY 1740.0261
VAL 1750.0202
ASP 1760.0079
LEU 1770.0080
THR 1780.0043
PHE 1790.0102
GLY 1800.0174
GLY 1810.0367
VAL 1820.0350
GLN 1830.0226
PHE 1840.0222
ALA 1850.0168
MET 1860.0267
VAL 1870.0184
ASN 1880.0155
ASN 1890.0235
GLY 1900.0172
PRO 1910.0568
GLY 1920.0303
PRO 1930.0234
GLY 1940.0341
GLU 1950.0111
SER 1960.0551
PHE 1970.0226
THR 1980.0326
ALA 1990.0414
GLN 2000.0239
PRO 2010.0311
ALA 2020.0210
ASP 2030.0214
MET 2040.0166
GLN 2050.0264
ALA 2060.0472
GLY 2070.0433
ILE 2080.0217
LYS 2090.0224
GLY 2100.0563
PRO 2110.0523
GLY 2120.0346
PRO 2130.0075
GLY 2140.0316
GLY 2150.0140
SER 2160.0165
ILE 2170.0125
GLN 2180.0109
VAL 2190.0084
ILE 2200.0110
ASN 2210.0191
GLY 2220.0157
SER 2230.0103
THR 2240.0115
ILE 2250.0070
GLY 2260.0073
THR 2270.0048
GLY 2280.0043
SER 2290.0041
LYS 2300.0028
LYS 2310.0062
THR 2320.0080
ILE 2330.0057
LEU 2340.0064
ILE 2350.0059
TYR 2360.0036
SER 2370.0038
ILE 2380.0039
ILE 2390.0043
GLY 2400.0044
VAL 2410.0038
LYS 2420.0069
LYS 2430.0038
GLY 2440.0122
THR 2450.0155
LEU 2460.0059
ALA 2470.0049
TRP 2480.0039
ALA 2490.0054
ARG 2500.0061
THR 2510.0065
GLY 2520.0085
PHE 2530.0092
SER 2540.0123
PRO 2550.0099
ALA 2560.0094
LYS 2570.0037
LYS 2580.0062
LEU 2590.0116
ASN 2600.0168
ALA 2610.0143
GLY 2620.0112
VAL 2630.0132
VAL 2640.0117
ARG 2650.0136
VAL 2660.0074
PHE 2670.0075
PHE 2680.0069
LEU 2690.0056
ASN 2700.0071
GLN 2710.0037
LYS 2720.0094
LYS 2730.0093
ALA 2740.0034
LYS 2750.0055
ASP 2760.0052
VAL 2770.0044
LEU 2780.0023
ARG 2790.0046
LYS 2800.0050
THR 2810.0073
SER 2820.0064
ARG 2830.0037
PRO 2840.0017
MET 2850.0075
VAL 2860.0129
ASP 2870.0097
LEU 2880.0036
THR 2890.0021
PHE 2900.0071
GLY 2910.0075
GLY 2920.0142

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.