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***  TLR_3_simulation  ***

<R2> analysis for 2608260325273940753

---  normal mode 9  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0868
THR 260.0124
LYS 270.0125
CYS 280.0118
THR 290.0118
VAL 300.0124
SER 310.0121
HIS 320.0126
GLU 330.0128
VAL 340.0113
ALA 350.0113
ASP 360.0102
CYS 370.0102
SER 380.0089
HIS 390.0089
LEU 400.0103
LYS 410.0099
LEU 420.0105
THR 430.0105
GLN 440.0112
VAL 450.0112
PRO 460.0127
ASP 470.0139
ASP 480.0148
LEU 490.0140
PRO 500.0148
THR 510.0148
ASN 520.0147
ILE 530.0131
THR 540.0122
VAL 550.0107
LEU 560.0103
ASN 570.0091
LEU 580.0088
THR 590.0075
HIS 600.0073
ASN 610.0084
GLN 620.0087
LEU 630.0085
ARG 640.0081
ARG 650.0082
LEU 660.0088
PRO 670.0100
ALA 680.0105
ALA 690.0121
ASN 700.0121
PHE 710.0118
THR 720.0131
ARG 730.0141
TYR 740.0129
SER 750.0131
GLN 760.0133
LEU 770.0117
THR 780.0110
SER 790.0096
LEU 800.0088
ASP 810.0077
VAL 820.0072
GLY 830.0059
PHE 840.0056
ASN 850.0065
THR 860.0064
ILE 870.0062
SER 880.0054
LYS 890.0058
LEU 900.0064
GLU 910.0075
PRO 920.0077
GLU 930.0093
LEU 940.0095
CYS 950.0093
GLN 960.0106
LYS 970.0115
LEU 980.0111
PRO 990.0116
MET 1000.0117
LEU 1010.0101
LYS 1020.0096
VAL 1030.0084
LEU 1040.0073
ASN 1050.0061
LEU 1060.0052
GLN 1070.0041
HIS 1080.0037
ASN 1090.0045
GLU 1100.0041
LEU 1110.0036
SER 1120.0022
GLN 1130.0021
LEU 1140.0028
SER 1150.0035
ASP 1160.0047
LYS 1170.0057
THR 1180.0056
PHE 1190.0064
ALA 1200.0072
PHE 1210.0087
CYS 1220.0087
THR 1230.0096
ASN 1240.0102
LEU 1250.0088
THR 1260.0089
GLU 1270.0075
LEU 1280.0061
HIS 1290.0049
LEU 1300.0035
MET 1310.0025
SER 1320.0017
ASN 1330.0022
SER 1340.0014
ILE 1350.0005
GLN 1360.0011
LYS 1370.0015
ILE 1380.0023
LYS 1390.0026
ASN 1400.0038
ASN 1410.0050
PRO 1420.0048
PHE 1430.0060
VAL 1440.0072
LYS 1450.0081
GLN 1460.0081
LYS 1470.0095
ASN 1480.0099
LEU 1490.0084
ILE 1500.0086
THR 1510.0070
LEU 1520.0057
ASP 1530.0043
LEU 1540.0030
SER 1550.0021
HIS 1560.0006
ASN 1570.0005
GLY 1580.0017
LEU 1590.0025
SER 1600.0039
SER 1610.0047
THR 1620.0052
LYS 1630.0054
LEU 1640.0050
GLY 1650.0057
THR 1660.0066
GLN 1670.0080
VAL 1680.0090
GLN 1690.0084
LEU 1700.0083
GLU 1710.0099
ASN 1720.0100
LEU 1730.0085
GLN 1740.0086
GLU 1750.0071
LEU 1760.0060
LEU 1770.0045
LEU 1780.0039
SER 1790.0031
ASN 1800.0023
ASN 1810.0026
LYS 1820.0037
ILE 1830.0048
GLN 1840.0062
ALA 1850.0072
LEU 1860.0076
LYS 1870.0084
SER 1880.0092
GLU 1890.0085
GLU 1900.0072
LEU 1910.0078
ASP 1920.0089
ILE 1930.0082
PHE 1940.0088
ALA 1950.0104
ASN 1960.0110
SER 1970.0100
SER 1980.0103
LEU 1990.0089
LYS 2000.0088
LYS 2010.0074
LEU 2020.0067
GLU 2030.0054
LEU 2040.0052
SER 2050.0044
SER 2060.0039
ASN 2070.0046
GLN 2080.0058
ILE 2090.0068
LYS 2100.0081
GLU 2110.0090
PHE 2120.0092
SER 2130.0100
PRO 2140.0113
GLY 2150.0112
CYS 2160.0097
PHE 2170.0098
HIS 2180.0111
ALA 2190.0102
ILE 2200.0098
GLY 2210.0110
ARG 2220.0109
LEU 2230.0098
PHE 2240.0097
GLY 2250.0083
LEU 2260.0076
PHE 2270.0063
LEU 2280.0062
ASN 2290.0052
ASN 2300.0049
VAL 2310.0060
GLN 2320.0070
LEU 2330.0082
GLY 2340.0091
PRO 2350.0102
SER 2360.0110
LEU 2370.0099
THR 2380.0097
GLU 2390.0112
LYS 2400.0111
LEU 2410.0100
CYS 2420.0109
LEU 2430.0120
GLU 2440.0112
LEU 2450.0109
ALA 2460.0124
ASN 2470.0130
THR 2480.0118
SER 2490.0115
ILE 2500.0104
ARG 2510.0101
ASN 2520.0087
LEU 2530.0082
SER 2540.0070
LEU 2550.0070
SER 2560.0059
ASN 2570.0058
SER 2580.0069
GLN 2590.0076
LEU 2600.0085
SER 2610.0090
THR 2620.0100
THR 2630.0104
SER 2640.0117
ASN 2650.0126
THR 2660.0128
THR 2670.0114
PHE 2680.0113
LEU 2690.0127
GLY 2700.0125
LEU 2710.0119
LYS 2720.0132
TRP 2730.0134
THR 2740.0122
ASN 2750.0120
LEU 2760.0107
THR 2770.0101
MET 2780.0088
LEU 2790.0084
ASP 2800.0072
LEU 2810.0073
SER 2820.0061
TYR 2830.0057
ASN 2840.0069
ASN 2850.0072
LEU 2860.0082
ASN 2870.0089
VAL 2880.0099
VAL 2890.0101
GLY 2900.0113
ASN 2910.0120
ASP 2920.0123
SER 2930.0115
PHE 2940.0110
ALA 2950.0122
TRP 2960.0125
LEU 2970.0116
PRO 2980.0123
GLN 2990.0117
LEU 3000.0104
GLU 3010.0096
TYR 3020.0084
PHE 3030.0081
PHE 3040.0070
LEU 3050.0070
GLU 3060.0058
TYR 3070.0054
ASN 3080.0066
ASN 3090.0073
ILE 3100.0082
GLN 3110.0088
HIS 3120.0094
LEU 3130.0094
PHE 3140.0105
SER 3150.0109
HIS 3160.0116
SER 3170.0107
LEU 3180.0103
HIS 3190.0115
GLY 3200.0119
LEU 3210.0108
PHE 3220.0113
ASN 3230.0108
VAL 3240.0096
ARG 3250.0090
TYR 3260.0078
LEU 3270.0075
ASN 3280.0064
LEU 3290.0064
LYS 3300.0052
ARG 3310.0053
SER 3320.0064
PHE 3330.0069
THR 3340.0072
LYS 3350.0066
GLN 3360.0070
SER 3370.0079
ILE 3380.0080
SER 3390.0092
LEU 3400.0096
ALA 3410.0089
SER 3420.0088
LEU 3430.0081
PRO 3440.0080
LYS 3450.0088
ILE 3460.0088
ASP 3470.0098
ASP 3480.0099
PHE 3490.0102
SER 3500.0098
PHE 3510.0094
GLN 3520.0104
TRP 3530.0109
LEU 3540.0100
LYS 3550.0105
CYS 3560.0101
LEU 3570.0089
GLU 3580.0082
HIS 3590.0072
LEU 3600.0068
ASN 3610.0058
MET 3620.0058
GLU 3630.0047
ASP 3640.0044
ASN 3650.0054
ASP 3660.0059
ILE 3670.0064
PRO 3680.0067
GLY 3690.0065
ILE 3700.0068
LYS 3710.0078
SER 3720.0082
ASN 3730.0089
MET 3740.0083
PHE 3750.0082
THR 3760.0091
GLY 3770.0098
LEU 3780.0091
ILE 3790.0096
ASN 3800.0092
LEU 3810.0080
LYS 3820.0074
TYR 3830.0065
LEU 3840.0060
SER 3850.0051
LEU 3860.0049
SER 3870.0039
ASN 3880.0040
SER 3890.0050
PHE 3900.0052
THR 3910.0053
SER 3920.0048
LEU 3930.0047
ARG 3940.0041
THR 3950.0043
LEU 3960.0045
THR 3970.0049
ASN 3980.0054
GLU 3990.0062
THR 4000.0059
PHE 4010.0063
VAL 4020.0071
SER 4030.0077
LEU 4040.0074
ALA 4050.0077
HIS 4060.0085
SER 4070.0080
PRO 4080.0079
LEU 4090.0069
HIS 4100.0065
ILE 4110.0056
LEU 4120.0051
ASN 4130.0043
LEU 4140.0039
THR 4150.0031
LYS 4160.0030
ASN 4170.0037
LYS 4180.0033
ILE 4190.0033
SER 4200.0029
LYS 4210.0031
ILE 4220.0035
GLU 4230.0038
SER 4240.0041
ASP 4250.0048
ALA 4260.0048
PHE 4270.0051
SER 4280.0057
TRP 4290.0064
LEU 4300.0062
GLY 4310.0064
HIS 4320.0066
LEU 4330.0058
GLU 4340.0056
VAL 4350.0048
LEU 4360.0042
ASP 4370.0035
LEU 4380.0031
GLY 4390.0024
LEU 4400.0021
ASN 4410.0024
GLU 4420.0021
ILE 4430.0021
GLY 4440.0017
GLN 4450.0019
GLU 4460.0020
LEU 4470.0026
THR 4480.0030
GLY 4490.0035
GLN 4500.0038
GLU 4510.0038
TRP 4520.0042
ARG 4530.0048
GLY 4540.0055
LEU 4550.0053
GLU 4560.0058
ASN 4570.0058
ILE 4580.0050
PHE 4590.0049
GLU 4600.0041
ILE 4610.0035
TYR 4620.0030
LEU 4630.0024
SER 4640.0019
TYR 4650.0014
ASN 4660.0016
LYS 4670.0012
TYR 4680.0011
LEU 4690.0017
GLN 4700.0019
LEU 4710.0025
THR 4720.0030
ARG 4730.0036
ASN 4740.0038
SER 4750.0034
PHE 4760.0038
ALA 4770.0043
LEU 4780.0045
VAL 4790.0046
PRO 4800.0049
SER 4810.0050
LEU 4820.0044
GLN 4830.0043
ARG 4840.0037
LEU 4850.0032
MET 4860.0026
LEU 4870.0022
ARG 4880.0017
ARG 4890.0012
VAL 4900.0014
ALA 4910.0011
LEU 4920.0017
LYS 4930.0019
ASN 4940.0024
VAL 4950.0028
ASP 4960.0033
SER 4970.0036
SER 4980.0041
PRO 4990.0043
SER 5000.0039
PRO 5010.0036
PHE 5020.0037
GLN 5030.0043
PRO 5040.0046
LEU 5050.0043
ARG 5060.0047
ASN 5070.0046
LEU 5080.0040
THR 5090.0038
ILE 5100.0032
LEU 5110.0029
ASP 5120.0024
LEU 5130.0023
SER 5140.0018
ASN 5150.0015
ASN 5160.0017
ASN 5170.0020
ILE 5180.0024
ALA 5190.0028
ASN 5200.0032
ILE 5210.0034
ASN 5220.0039
ASP 5230.0041
ASP 5240.0042
MET 5250.0037
LEU 5260.0039
GLU 5270.0045
GLY 5280.0047
LEU 5290.0042
GLU 5300.0043
LYS 5310.0040
LEU 5320.0035
GLU 5330.0030
ILE 5340.0026
LEU 5350.0026
ASP 5360.0021
LEU 5370.0022
GLN 5380.0019
HIS 5390.0018
ASN 5400.0022
ASN 5410.0026
LEU 5420.0029
ALA 5430.0031
ARG 5440.0036
LEU 5450.0036
TRP 5460.0036
LYS 5470.0040
HIS 5480.0044
ALA 5490.0047
ASN 5500.0045
PRO 5510.0049
GLY 5520.0050
GLY 5530.0047
PRO 5540.0042
ILE 5550.0040
TYR 5560.0040
PHE 5570.0037
LEU 5580.0035
LYS 5590.0039
GLY 5600.0040
LEU 5610.0037
SER 5620.0035
HIS 5630.0031
LEU 5640.0029
HIS 5650.0023
ILE 5660.0021
LEU 5670.0022
ASN 5680.0020
LEU 5690.0022
GLU 5700.0020
SER 5710.0021
ASN 5720.0025
GLY 5730.0028
PHE 5740.0030
ASP 5750.0033
GLU 5760.0036
ILE 5770.0034
PRO 5780.0038
VAL 5790.0038
GLU 5800.0038
VAL 5810.0035
PHE 5820.0032
LYS 5830.0036
ASP 5840.0035
LEU 5850.0030
PHE 5860.0027
GLU 5870.0022
LEU 5880.0023
LYS 5890.0017
ILE 5900.0018
ILE 5910.0020
ASP 5920.0019
LEU 5930.0022
GLY 5940.0020
LEU 5950.0022
ASN 5960.0026
ASN 5970.0030
LEU 5980.0030
ASN 5990.0033
THR 6000.0035
LEU 6010.0034
PRO 6020.0037
ALA 6030.0037
SER 6040.0034
VAL 6050.0032
PHE 6060.0029
ASN 6070.0030
ASN 6080.0029
GLN 6090.0024
VAL 6100.0022
SER 6110.0018
LEU 6120.0018
LYS 6130.0014
SER 6140.0015
LEU 6150.0019
ASN 6160.0018
LEU 6170.0022
GLN 6180.0021
LYS 6190.0023
ASN 6200.0026
LEU 6210.0030
ILE 6220.0031
THR 6230.0033
SER 6240.0034
VAL 6250.0031
GLU 6260.0033
LYS 6270.0032
LYS 6280.0034
VAL 6290.0031
PHE 6300.0028
GLY 6310.0028
PRO 6320.0025
ALA 6330.0023
PHE 6340.0022
ARG 6350.0020
ASN 6360.0016
LEU 6370.0016
THR 6380.0012
GLU 6390.0014
LEU 6400.0017
ASP 6410.0018
MET 6420.0022
ARG 6430.0022
PHE 6440.0024
ASN 6450.0027
PRO 6460.0031
PHE 6470.0032
ASP 6480.0035
CYS 6490.0036
THR 6500.0039
CYS 6510.0039
GLU 6520.0039
SER 6530.0036
ILE 6540.0034
ALA 6550.0034
TRP 6560.0032
PHE 6570.0029
VAL 6580.0030
ASN 6590.0030
TRP 6600.0027
ILE 6610.0025
ASN 6620.0026
GLU 6630.0026
THR 6640.0024
HIS 6650.0021
THR 6660.0016
ASN 6670.0015
ILE 6680.0018
PRO 6690.0017
GLU 6700.0020
LEU 6710.0022
SER 6720.0025
SER 6730.0025
HIS 6740.0024
TYR 6750.0026
LEU 6760.0029
CYS 6770.0033
ASN 6780.0034
THR 6790.0037
PRO 6800.0040
PRO 6810.0041
HIS 6820.0042
TYR 6830.0038
HIS 6840.0036
GLY 6850.0033
PHE 6860.0033
PRO 6870.0030
VAL 6880.0030
ARG 6890.0029
LEU 6900.0032
PHE 6910.0034
ASP 6920.0037
THR 6930.0036
SER 6940.0039
SER 6950.0042
CYS 6960.0041
GLU 10.0118
ALA 20.0115
ALA 30.0109
ALA 40.0101
LYS 50.0098
MET 60.0095
GLN 70.0087
ARG 80.0082
LEU 90.0079
VAL 100.0074
LEU 110.0067
LEU 120.0064
LEU 130.0060
ALA 140.0054
ILE 150.0048
SER 160.0045
LEU 170.0041
LEU 180.0035
LEU 190.0029
TYR 200.0025
GLN 210.0023
ASP 220.0015
LEU 230.0009
PRO 240.0008
VAL 250.0015
ARG 260.0024
SER 270.0027
GLU 280.0037
PHE 290.0047
GLU 300.0043
LEU 310.0042
ASP 320.0052
ARG 330.0061
ILE 340.0061
CYS 350.0069
GLY 360.0078
TYR 370.0070
GLY 380.0066
THR 390.0079
ALA 400.0081
ARG 410.0078
CYS 420.0076
ARG 430.0087
LYS 440.0093
LYS 450.0105
CYS 460.0109
ARG 470.0114
SER 480.0125
GLN 490.0117
GLU 500.0110
TYR 510.0114
ARG 520.0105
ILE 530.0100
GLY 540.0090
ARG 550.0080
CYS 560.0069
PRO 570.0056
ASN 580.0060
THR 590.0071
TYR 600.0080
ALA 610.0091
CYS 620.0087
CYS 630.0093
LEU 640.0094
ARG 650.0099
LYS 660.0116
TRP 670.0102
ASP 680.0092
GLU 690.0094
SER 700.0076
LEU 710.0065
LEU 720.0079
ASN 730.0064
ARG 740.0043
THR 750.0060
LYS 760.0071
PRO 770.0073
GLU 780.0059
ALA 790.0092
ALA 800.0112
ALA 810.0157
LYS 820.0152
LYS 830.0143
GLU 840.0171
MET 850.0156
ASN 860.0177
LEU 870.0166
SER 880.0179
VAL 890.0180
GLY 900.0186
LEU 910.0201
GLY 920.0204
GLY 930.0234
GLY 940.0239
SER 950.0241
ASN 960.0227
LEU 970.0223
SER 980.0216
VAL 990.0208
GLY 1000.0208
LEU 1010.0191
GLY 1020.0202
GLU 1030.0179
ILE 1040.0199
GLY 1050.0185
GLY 1060.0193
GLY 1070.0199
SER 1080.0186
LYS 1090.0187
LEU 1100.0189
LEU 1110.0183
ASP 1120.0205
ILE 1130.0201
ASN 1140.0225
LEU 1150.0214
GLY 1160.0235
ARG 1170.0237
GLY 1180.0228
GLY 1190.0201
GLY 1200.0177
SER 1210.0177
MET 1220.0150
VAL 1230.0148
ASP 1240.0130
LEU 1250.0121
THR 1260.0116
PHE 1270.0100
GLY 1280.0105
GLY 1290.0080
VAL 1300.0070
GLY 1310.0042
GLY 1320.0029
GLY 1330.0017
SER 1340.0032
THR 1350.0029
PHE 1360.0057
THR 1370.0064
PHE 1380.0075
PHE 1390.0090
PRO 1400.0097
LEU 1410.0128
VAL 1420.0135
ILE 1430.0157
GLY 1440.0176
GLY 1450.0186
GLY 1460.0205
SER 1470.0209
ASP 1480.0196
ALA 1490.0190
MET 1500.0161
TYR 1510.0156
LEU 1520.0132
GLY 1530.0124
PHE 1540.0101
ALA 1550.0093
ALA 1560.0059
GLY 1570.0045
GLY 1580.0034
GLY 1590.0020
SER 1600.0017
ALA 1610.0019
GLY 1620.0039
GLY 1630.0054
GLU 1640.0067
ASN 1650.0061
HIS 1660.0081
VAL 1670.0083
ALA 1680.0095
PHE 1690.0110
GLY 1700.0110
PRO 1710.0121
GLY 1720.0094
PRO 1730.0087
GLY 1740.0067
VAL 1750.0074
ASP 1760.0059
LEU 1770.0047
THR 1780.0043
PHE 1790.0029
GLY 1800.0044
GLY 1810.0056
VAL 1820.0034
GLN 1830.0027
PHE 1840.0014
ALA 1850.0023
MET 1860.0049
VAL 1870.0049
ASN 1880.0073
ASN 1890.0093
GLY 1900.0111
PRO 1910.0157
GLY 1920.0168
PRO 1930.0208
GLY 1940.0279
GLU 1950.0282
SER 1960.0329
PHE 1970.0330
THR 1980.0376
ALA 1990.0368
GLN 2000.0397
PRO 2010.0404
ALA 2020.0414
ASP 2030.0366
MET 2040.0339
GLN 2050.0351
ALA 2060.0307
GLY 2070.0282
ILE 2080.0220
LYS 2090.0194
GLY 2100.0140
PRO 2110.0096
GLY 2120.0075
PRO 2130.0050
GLY 2140.0051
GLY 2150.0075
SER 2160.0070
ILE 2170.0079
GLN 2180.0086
VAL 2190.0092
ILE 2200.0120
ASN 2210.0133
GLY 2220.0162
SER 2230.0186
THR 2240.0194
ILE 2250.0225
GLY 2260.0243
THR 2270.0255
GLY 2280.0271
SER 2290.0277
LYS 2300.0270
LYS 2310.0250
THR 2320.0245
ILE 2330.0213
LEU 2340.0202
ILE 2350.0178
TYR 2360.0157
SER 2370.0149
ILE 2380.0117
ILE 2390.0128
GLY 2400.0095
VAL 2410.0066
LYS 2420.0072
LYS 2430.0073
GLY 2440.0105
THR 2450.0118
LEU 2460.0123
ALA 2470.0149
TRP 2480.0171
ALA 2490.0192
ARG 2500.0216
THR 2510.0228
GLY 2520.0247
PHE 2530.0250
SER 2540.0271
PRO 2550.0271
ALA 2560.0283
LYS 2570.0293
LYS 2580.0284
LEU 2590.0282
ASN 2600.0279
ALA 2610.0260
GLY 2620.0252
VAL 2630.0242
VAL 2640.0222
ARG 2650.0222
VAL 2660.0199
PHE 2670.0202
PHE 2680.0196
LEU 2690.0203
ASN 2700.0196
GLN 2710.0202
LYS 2720.0218
LYS 2730.0222
ALA 2740.0214
LYS 2750.0225
ASP 2760.0241
VAL 2770.0226
LEU 2780.0209
ARG 2790.0219
LYS 2800.0231
THR 2810.0214
SER 2820.0174
ARG 2830.0181
PRO 2840.0167
MET 2850.0173
VAL 2860.0313
ASP 2870.0385
LEU 2880.0433
THR 2890.0549
PHE 2900.0680
GLY 2910.0826
GLY 2920.0868

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.