CNRS Nantes University US2B US2B
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***  TLR_3_simulation  ***

<R2> analysis for 2608260325273940753

---  normal mode 90  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0854
THR 260.0240
LYS 270.0200
CYS 280.0136
THR 290.0118
VAL 300.0143
SER 310.0136
HIS 320.0186
GLU 330.0199
VAL 340.0125
ALA 350.0094
ASP 360.0042
CYS 370.0057
SER 380.0069
HIS 390.0123
LEU 400.0147
LYS 410.0191
LEU 420.0160
THR 430.0167
GLN 440.0129
VAL 450.0089
PRO 460.0159
ASP 470.0176
ASP 480.0234
LEU 490.0191
PRO 500.0234
THR 510.0221
ASN 520.0238
ILE 530.0169
THR 540.0169
VAL 550.0112
LEU 560.0050
ASN 570.0036
LEU 580.0048
THR 590.0086
HIS 600.0123
ASN 610.0148
GLN 620.0173
LEU 630.0132
ARG 640.0163
ARG 650.0132
LEU 660.0124
PRO 670.0106
ALA 680.0086
ALA 690.0044
ASN 700.0043
PHE 710.0031
THR 720.0072
ARG 730.0115
TYR 740.0099
SER 750.0145
GLN 760.0156
LEU 770.0118
THR 780.0148
SER 790.0117
LEU 800.0089
ASP 810.0095
VAL 820.0102
GLY 830.0118
PHE 840.0129
ASN 850.0135
THR 860.0170
ILE 870.0163
SER 880.0188
LYS 890.0181
LEU 900.0165
GLU 910.0173
PRO 920.0183
GLU 930.0163
LEU 940.0139
CYS 950.0153
GLN 960.0158
LYS 970.0121
LEU 980.0116
PRO 990.0150
MET 1000.0139
LEU 1010.0119
LYS 1020.0124
VAL 1030.0118
LEU 1040.0121
ASN 1050.0120
LEU 1060.0123
GLN 1070.0119
HIS 1080.0124
ASN 1090.0133
GLU 1100.0145
LEU 1110.0115
SER 1120.0113
GLN 1130.0111
LEU 1140.0113
SER 1150.0112
ASP 1160.0116
LYS 1170.0138
THR 1180.0138
PHE 1190.0126
ALA 1200.0131
PHE 1210.0141
CYS 1220.0126
THR 1230.0116
ASN 1240.0107
LEU 1250.0099
THR 1260.0095
GLU 1270.0094
LEU 1280.0092
HIS 1290.0092
LEU 1300.0088
MET 1310.0074
SER 1320.0081
ASN 1330.0085
SER 1340.0064
ILE 1350.0042
GLN 1360.0033
LYS 1370.0036
ILE 1380.0033
LYS 1390.0044
ASN 1400.0051
ASN 1410.0041
PRO 1420.0039
PHE 1430.0049
VAL 1440.0069
LYS 1450.0087
GLN 1460.0071
LYS 1470.0086
ASN 1480.0094
LEU 1490.0066
ILE 1500.0060
THR 1510.0056
LEU 1520.0042
ASP 1530.0032
LEU 1540.0016
SER 1550.0024
HIS 1560.0052
ASN 1570.0046
GLY 1580.0078
LEU 1590.0084
SER 1600.0128
SER 1610.0133
THR 1620.0116
LYS 1630.0129
LEU 1640.0112
GLY 1650.0135
THR 1660.0160
GLN 1670.0169
VAL 1680.0165
GLN 1690.0128
LEU 1700.0097
GLU 1710.0124
ASN 1720.0107
LEU 1730.0083
GLN 1740.0074
GLU 1750.0064
LEU 1760.0058
LEU 1770.0053
LEU 1780.0071
SER 1790.0073
ASN 1800.0088
ASN 1810.0098
LYS 1820.0126
ILE 1830.0135
GLN 1840.0165
ALA 1850.0174
LEU 1860.0160
LYS 1870.0179
SER 1880.0176
GLU 1890.0204
GLU 1900.0183
LEU 1910.0156
ASP 1920.0175
ILE 1930.0162
PHE 1940.0141
ALA 1950.0162
ASN 1960.0152
SER 1970.0128
SER 1980.0111
LEU 1990.0103
LYS 2000.0102
LYS 2010.0093
LEU 2020.0097
GLU 2030.0096
LEU 2040.0106
SER 2050.0103
SER 2060.0114
ASN 2070.0126
GLN 2080.0135
ILE 2090.0127
LYS 2100.0136
GLU 2110.0147
PHE 2120.0124
SER 2130.0136
PRO 2140.0119
GLY 2150.0111
CYS 2160.0130
PHE 2170.0108
HIS 2180.0111
ALA 2190.0139
ILE 2200.0134
GLY 2210.0130
ARG 2220.0116
LEU 2230.0108
PHE 2240.0114
GLY 2250.0110
LEU 2260.0091
PHE 2270.0092
LEU 2280.0081
ASN 2290.0099
ASN 2300.0121
VAL 2310.0118
GLN 2320.0126
LEU 2330.0094
GLY 2340.0119
PRO 2350.0119
SER 2360.0149
LEU 2370.0109
THR 2380.0092
GLU 2390.0107
LYS 2400.0080
LEU 2410.0078
CYS 2420.0085
LEU 2430.0091
GLU 2440.0058
LEU 2450.0071
ALA 2460.0108
ASN 2470.0143
THR 2480.0130
SER 2490.0154
ILE 2500.0116
ARG 2510.0143
ASN 2520.0111
LEU 2530.0064
SER 2540.0064
LEU 2550.0063
SER 2560.0102
ASN 2570.0133
SER 2580.0115
GLN 2590.0146
LEU 2600.0129
SER 2610.0181
THR 2620.0169
THR 2630.0134
SER 2640.0164
ASN 2650.0176
THR 2660.0209
THR 2670.0157
PHE 2680.0129
LEU 2690.0182
GLY 2700.0170
LEU 2710.0149
LYS 2720.0211
TRP 2730.0220
THR 2740.0184
ASN 2750.0201
LEU 2760.0132
THR 2770.0129
MET 2780.0087
LEU 2790.0038
ASP 2800.0052
LEU 2810.0097
SER 2820.0108
TYR 2830.0128
ASN 2840.0130
ASN 2850.0142
LEU 2860.0141
ASN 2870.0166
VAL 2880.0145
VAL 2890.0104
GLY 2900.0113
ASN 2910.0141
ASP 2920.0132
SER 2930.0118
PHE 2940.0090
ALA 2950.0122
TRP 2960.0164
LEU 2970.0132
PRO 2980.0162
GLN 2990.0155
LEU 3000.0106
GLU 3010.0085
TYR 3020.0063
PHE 3030.0028
PHE 3040.0060
LEU 3050.0087
GLU 3060.0124
TYR 3070.0125
ASN 3080.0126
ASN 3090.0131
ILE 3100.0130
GLN 3110.0163
HIS 3120.0132
LEU 3130.0094
PHE 3140.0073
SER 3150.0040
HIS 3160.0087
SER 3170.0078
LEU 3180.0043
HIS 3190.0070
GLY 3200.0084
LEU 3210.0067
PHE 3220.0080
ASN 3230.0082
VAL 3240.0054
ARG 3250.0063
TYR 3260.0045
LEU 3270.0038
ASN 3280.0063
LEU 3290.0082
LYS 3300.0110
ARG 3310.0109
SER 3320.0110
PHE 3330.0113
THR 3340.0114
LYS 3350.0117
GLN 3360.0058
SER 3370.0072
ILE 3380.0076
SER 3390.0141
LEU 3400.0160
ALA 3410.0110
SER 3420.0100
LEU 3430.0099
PRO 3440.0110
LYS 3450.0147
ILE 3460.0092
ASP 3470.0077
ASP 3480.0057
PHE 3490.0029
SER 3500.0037
PHE 3510.0026
GLN 3520.0023
TRP 3530.0036
LEU 3540.0021
LYS 3550.0039
CYS 3560.0040
LEU 3570.0023
GLU 3580.0037
HIS 3590.0041
LEU 3600.0040
ASN 3610.0066
MET 3620.0073
GLU 3630.0087
ASP 3640.0102
ASN 3650.0102
ASP 3660.0091
ILE 3670.0080
PRO 3680.0070
GLY 3690.0062
ILE 3700.0057
LYS 3710.0053
SER 3720.0042
ASN 3730.0036
MET 3740.0041
PHE 3750.0032
THR 3760.0017
GLY 3770.0012
LEU 3780.0011
ILE 3790.0015
ASN 3800.0020
LEU 3810.0016
LYS 3820.0019
TYR 3830.0025
LEU 3840.0029
SER 3850.0039
LEU 3860.0054
SER 3870.0062
ASN 3880.0067
SER 3890.0063
PHE 3900.0059
THR 3910.0048
SER 3920.0030
LEU 3930.0029
ARG 3940.0037
THR 3950.0038
LEU 3960.0031
THR 3970.0024
ASN 3980.0021
GLU 3990.0012
THR 4000.0018
PHE 4010.0018
VAL 4020.0017
SER 4030.0021
LEU 4040.0024
ALA 4050.0023
HIS 4060.0013
SER 4070.0013
PRO 4080.0016
LEU 4090.0014
HIS 4100.0017
ILE 4110.0021
LEU 4120.0021
ASN 4130.0031
LEU 4140.0032
THR 4150.0044
LYS 4160.0059
ASN 4170.0041
LYS 4180.0042
ILE 4190.0043
SER 4200.0054
LYS 4210.0057
ILE 4220.0050
GLU 4230.0042
SER 4240.0038
ASP 4250.0030
ALA 4260.0025
PHE 4270.0026
SER 4280.0021
TRP 4290.0020
LEU 4300.0028
GLY 4310.0025
HIS 4320.0030
LEU 4330.0033
GLU 4340.0042
VAL 4350.0045
LEU 4360.0049
ASP 4370.0056
LEU 4380.0055
GLY 4390.0064
LEU 4400.0070
ASN 4410.0069
GLU 4420.0071
ILE 4430.0070
GLY 4440.0075
GLN 4450.0073
GLU 4460.0058
LEU 4470.0053
THR 4480.0043
GLY 4490.0043
GLN 4500.0039
GLU 4510.0041
TRP 4520.0041
ARG 4530.0034
GLY 4540.0034
LEU 4550.0041
GLU 4560.0039
ASN 4570.0045
ILE 4580.0049
PHE 4590.0057
GLU 4600.0061
ILE 4610.0063
TYR 4620.0070
LEU 4630.0067
SER 4640.0076
TYR 4650.0083
ASN 4660.0081
LYS 4670.0081
TYR 4680.0075
LEU 4690.0068
GLN 4700.0062
LEU 4710.0046
THR 4720.0037
ARG 4730.0033
ASN 4740.0034
SER 4750.0042
PHE 4760.0040
ALA 4770.0034
LEU 4780.0034
VAL 4790.0043
PRO 4800.0047
SER 4810.0047
LEU 4820.0050
GLN 4830.0062
ARG 4840.0064
LEU 4850.0055
MET 4860.0072
LEU 4870.0066
ARG 4880.0074
ARG 4890.0075
VAL 4900.0068
ALA 4910.0074
LEU 4920.0064
LYS 4930.0051
ASN 4940.0039
VAL 4950.0043
ASP 4960.0033
SER 4970.0029
SER 4980.0026
PRO 4990.0034
SER 5000.0042
PRO 5010.0035
PHE 5020.0042
GLN 5030.0041
PRO 5040.0040
LEU 5050.0046
ARG 5060.0045
ASN 5070.0048
LEU 5080.0046
THR 5090.0056
ILE 5100.0057
LEU 5110.0063
ASP 5120.0062
LEU 5130.0052
SER 5140.0055
ASN 5150.0053
ASN 5160.0056
ASN 5170.0044
ILE 5180.0044
ALA 5190.0034
ASN 5200.0037
ILE 5210.0046
ASN 5220.0048
ASP 5230.0053
ASP 5240.0057
MET 5250.0057
LEU 5260.0060
GLU 5270.0059
GLY 5280.0059
LEU 5290.0059
GLU 5300.0061
LYS 5310.0060
LEU 5320.0059
GLU 5330.0063
ILE 5340.0062
LEU 5350.0059
ASP 5360.0057
LEU 5370.0049
GLN 5380.0044
HIS 5390.0040
ASN 5400.0037
ASN 5410.0037
LEU 5420.0038
ALA 5430.0027
ARG 5440.0030
LEU 5450.0043
TRP 5460.0042
LYS 5470.0045
HIS 5480.0065
ALA 5490.0069
ASN 5500.0069
PRO 5510.0102
GLY 5520.0115
GLY 5530.0091
PRO 5540.0062
ILE 5550.0067
TYR 5560.0062
PHE 5570.0066
LEU 5580.0058
LYS 5590.0066
GLY 5600.0074
LEU 5610.0064
SER 5620.0060
HIS 5630.0061
LEU 5640.0059
HIS 5650.0054
ILE 5660.0047
LEU 5670.0041
ASN 5680.0037
LEU 5690.0030
GLU 5700.0023
SER 5710.0025
ASN 5720.0023
GLY 5730.0010
PHE 5740.0012
ASP 5750.0016
GLU 5760.0028
ILE 5770.0030
PRO 5780.0047
VAL 5790.0051
GLU 5800.0057
VAL 5810.0048
PHE 5820.0038
LYS 5830.0051
ASP 5840.0055
LEU 5850.0042
PHE 5860.0036
GLU 5870.0035
LEU 5880.0029
LYS 5890.0021
ILE 5900.0018
ILE 5910.0013
ASP 5920.0008
LEU 5930.0006
GLY 5940.0011
LEU 5950.0016
ASN 5960.0014
ASN 5970.0017
LEU 5980.0019
ASN 5990.0028
THR 6000.0031
LEU 6010.0033
PRO 6020.0042
ALA 6030.0046
SER 6040.0039
VAL 6050.0030
PHE 6060.0028
ASN 6070.0040
ASN 6080.0032
GLN 6090.0018
VAL 6100.0021
SER 6110.0021
LEU 6120.0022
LYS 6130.0026
SER 6140.0026
LEU 6150.0026
ASN 6160.0025
LEU 6170.0027
GLN 6180.0029
LYS 6190.0030
ASN 6200.0030
LEU 6210.0032
ILE 6220.0034
THR 6230.0029
SER 6240.0032
VAL 6250.0038
GLU 6260.0035
LYS 6270.0039
LYS 6280.0036
VAL 6290.0031
PHE 6300.0033
GLY 6310.0042
PRO 6320.0038
ALA 6330.0032
PHE 6340.0040
ARG 6350.0047
ASN 6360.0043
LEU 6370.0041
THR 6380.0043
GLU 6390.0040
LEU 6400.0037
ASP 6410.0036
MET 6420.0034
ARG 6430.0033
PHE 6440.0032
ASN 6450.0031
PRO 6460.0027
PHE 6470.0023
ASP 6480.0029
CYS 6490.0028
THR 6500.0043
CYS 6510.0042
GLU 6520.0054
SER 6530.0042
ILE 6540.0028
ALA 6550.0027
TRP 6560.0029
PHE 6570.0030
VAL 6580.0027
ASN 6590.0027
TRP 6600.0030
ILE 6610.0036
ASN 6620.0031
GLU 6630.0012
THR 6640.0022
HIS 6650.0046
THR 6660.0034
ASN 6670.0036
ILE 6680.0030
PRO 6690.0035
GLU 6700.0032
LEU 6710.0035
SER 6720.0036
SER 6730.0038
HIS 6740.0031
TYR 6750.0022
LEU 6760.0027
CYS 6770.0022
ASN 6780.0022
THR 6790.0037
PRO 6800.0051
PRO 6810.0062
HIS 6820.0075
TYR 6830.0053
HIS 6840.0044
GLY 6850.0047
PHE 6860.0044
PRO 6870.0034
VAL 6880.0015
ARG 6890.0020
LEU 6900.0032
PHE 6910.0035
ASP 6920.0052
THR 6930.0047
SER 6940.0077
SER 6950.0098
CYS 6960.0094
GLU 10.0854
ALA 20.0778
ALA 30.0639
ALA 40.0411
LYS 50.0368
MET 60.0281
GLN 70.0184
ARG 80.0138
LEU 90.0120
VAL 100.0156
LEU 110.0085
LEU 120.0087
LEU 130.0121
ALA 140.0126
ILE 150.0115
SER 160.0137
LEU 170.0155
LEU 180.0114
LEU 190.0094
TYR 200.0131
GLN 210.0108
ASP 220.0043
LEU 230.0060
PRO 240.0092
VAL 250.0031
ARG 260.0161
SER 270.0168
GLU 280.0097
PHE 290.0099
GLU 300.0155
LEU 310.0122
ASP 320.0065
ARG 330.0054
ILE 340.0080
CYS 350.0084
GLY 360.0111
TYR 370.0143
GLY 380.0090
THR 390.0054
ALA 400.0045
ARG 410.0047
CYS 420.0052
ARG 430.0053
LYS 440.0064
LYS 450.0067
CYS 460.0100
ARG 470.0128
SER 480.0134
GLN 490.0108
GLU 500.0070
TYR 510.0059
ARG 520.0048
ILE 530.0049
GLY 540.0047
ARG 550.0040
CYS 560.0060
PRO 570.0083
ASN 580.0075
THR 590.0069
TYR 600.0041
ALA 610.0064
CYS 620.0045
CYS 630.0061
LEU 640.0065
ARG 650.0092
LYS 660.0116
TRP 670.0175
ASP 680.0175
GLU 690.0150
SER 700.0204
LEU 710.0224
LEU 720.0228
ASN 730.0182
ARG 740.0171
THR 750.0201
LYS 760.0206
PRO 770.0196
GLU 780.0181
ALA 790.0185
ALA 800.0194
ALA 810.0165
LYS 820.0134
LYS 830.0084
GLU 840.0086
MET 850.0052
ASN 860.0044
LEU 870.0057
SER 880.0047
VAL 890.0057
GLY 900.0059
LEU 910.0059
GLY 920.0172
GLY 930.0293
GLY 940.0296
SER 950.0186
ASN 960.0041
LEU 970.0038
SER 980.0039
VAL 990.0058
GLY 1000.0061
LEU 1010.0095
GLY 1020.0119
GLU 1030.0092
ILE 1040.0104
GLY 1050.0080
GLY 1060.0055
GLY 1070.0065
SER 1080.0070
LYS 1090.0085
LEU 1100.0098
LEU 1110.0079
ASP 1120.0057
ILE 1130.0051
ASN 1140.0067
LEU 1150.0056
GLY 1160.0050
ARG 1170.0111
GLY 1180.0108
GLY 1190.0096
GLY 1200.0063
SER 1210.0058
MET 1220.0060
VAL 1230.0060
ASP 1240.0062
LEU 1250.0068
THR 1260.0078
PHE 1270.0066
GLY 1280.0084
GLY 1290.0098
VAL 1300.0106
GLY 1310.0154
GLY 1320.0137
GLY 1330.0095
SER 1340.0112
THR 1350.0088
PHE 1360.0090
THR 1370.0071
PHE 1380.0046
PHE 1390.0044
PRO 1400.0046
LEU 1410.0061
VAL 1420.0095
ILE 1430.0091
GLY 1440.0134
GLY 1450.0193
GLY 1460.0312
SER 1470.0262
ASP 1480.0175
ALA 1490.0170
MET 1500.0096
TYR 1510.0060
LEU 1520.0070
GLY 1530.0073
PHE 1540.0095
ALA 1550.0107
ALA 1560.0162
GLY 1570.0139
GLY 1580.0118
GLY 1590.0073
SER 1600.0035
ALA 1610.0080
GLY 1620.0088
GLY 1630.0089
GLU 1640.0083
ASN 1650.0079
HIS 1660.0096
VAL 1670.0089
ALA 1680.0100
PHE 1690.0103
GLY 1700.0116
PRO 1710.0205
GLY 1720.0251
PRO 1730.0295
GLY 1740.0135
VAL 1750.0084
ASP 1760.0130
LEU 1770.0075
THR 1780.0130
PHE 1790.0140
GLY 1800.0218
GLY 1810.0361
VAL 1820.0274
GLN 1830.0183
PHE 1840.0053
ALA 1850.0076
MET 1860.0224
VAL 1870.0297
ASN 1880.0128
ASN 1890.0150
GLY 1900.0129
PRO 1910.0161
GLY 1920.0150
PRO 1930.0092
GLY 1940.0096
GLU 1950.0067
SER 1960.0217
PHE 1970.0107
THR 1980.0135
ALA 1990.0181
GLN 2000.0125
PRO 2010.0096
ALA 2020.0076
ASP 2030.0093
MET 2040.0026
GLN 2050.0098
ALA 2060.0120
GLY 2070.0211
ILE 2080.0213
LYS 2090.0205
GLY 2100.0383
PRO 2110.0186
GLY 2120.0100
PRO 2130.0119
GLY 2140.0120
GLY 2150.0227
SER 2160.0284
ILE 2170.0197
GLN 2180.0189
VAL 2190.0066
ILE 2200.0076
ASN 2210.0251
GLY 2220.0248
SER 2230.0203
THR 2240.0165
ILE 2250.0180
GLY 2260.0265
THR 2270.0256
GLY 2280.0178
SER 2290.0140
LYS 2300.0094
LYS 2310.0098
THR 2320.0076
ILE 2330.0083
LEU 2340.0044
ILE 2350.0083
TYR 2360.0066
SER 2370.0069
ILE 2380.0060
ILE 2390.0066
GLY 2400.0072
VAL 2410.0078
LYS 2420.0091
LYS 2430.0168
GLY 2440.0168
THR 2450.0098
LEU 2460.0053
ALA 2470.0050
TRP 2480.0048
ALA 2490.0059
ARG 2500.0068
THR 2510.0145
GLY 2520.0139
PHE 2530.0083
SER 2540.0089
PRO 2550.0125
ALA 2560.0241
LYS 2570.0218
LYS 2580.0164
LEU 2590.0121
ASN 2600.0065
ALA 2610.0100
GLY 2620.0089
VAL 2630.0022
VAL 2640.0077
ARG 2650.0071
VAL 2660.0114
PHE 2670.0098
PHE 2680.0100
LEU 2690.0085
ASN 2700.0079
GLN 2710.0024
LYS 2720.0084
LYS 2730.0108
ALA 2740.0058
LYS 2750.0029
ASP 2760.0054
VAL 2770.0058
LEU 2780.0040
ARG 2790.0034
LYS 2800.0042
THR 2810.0037
SER 2820.0030
ARG 2830.0019
PRO 2840.0022
MET 2850.0045
VAL 2860.0106
ASP 2870.0072
LEU 2880.0058
THR 2890.0053
PHE 2900.0063
GLY 2910.0087
GLY 2920.0143

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.