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***  TLR_3_simulation  ***

<R2> analysis for 2608260325273940753

---  normal mode 97  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0452
THR 260.0037
LYS 270.0025
CYS 280.0025
THR 290.0031
VAL 300.0025
SER 310.0029
HIS 320.0034
GLU 330.0029
VAL 340.0033
ALA 350.0019
ASP 360.0035
CYS 370.0035
SER 380.0036
HIS 390.0037
LEU 400.0035
LYS 410.0057
LEU 420.0057
THR 430.0057
GLN 440.0058
VAL 450.0056
PRO 460.0062
ASP 470.0060
ASP 480.0070
LEU 490.0062
PRO 500.0061
THR 510.0051
ASN 520.0052
ILE 530.0046
THR 540.0039
VAL 550.0035
LEU 560.0040
ASN 570.0041
LEU 580.0042
THR 590.0043
HIS 600.0045
ASN 610.0059
GLN 620.0062
LEU 630.0051
ARG 640.0053
ARG 650.0045
LEU 660.0038
PRO 670.0048
ALA 680.0037
ALA 690.0047
ASN 700.0044
PHE 710.0027
THR 720.0023
ARG 730.0029
TYR 740.0025
SER 750.0013
GLN 760.0027
LEU 770.0027
THR 780.0040
SER 790.0038
LEU 800.0025
ASP 810.0035
VAL 820.0036
GLY 830.0041
PHE 840.0049
ASN 850.0048
THR 860.0051
ILE 870.0033
SER 880.0036
LYS 890.0033
LEU 900.0021
GLU 910.0041
PRO 920.0053
GLU 930.0055
LEU 940.0031
CYS 950.0048
GLN 960.0060
LYS 970.0042
LEU 980.0037
PRO 990.0061
MET 1000.0065
LEU 1010.0062
LYS 1020.0076
VAL 1030.0065
LEU 1040.0045
ASN 1050.0039
LEU 1060.0029
GLN 1070.0039
HIS 1080.0039
ASN 1090.0028
GLU 1100.0023
LEU 1110.0016
SER 1120.0004
GLN 1130.0014
LEU 1140.0026
SER 1150.0040
ASP 1160.0055
LYS 1170.0063
THR 1180.0049
PHE 1190.0057
ALA 1200.0073
PHE 1210.0082
CYS 1220.0075
THR 1230.0095
ASN 1240.0097
LEU 1250.0082
THR 1260.0086
GLU 1270.0076
LEU 1280.0061
HIS 1290.0053
LEU 1300.0038
MET 1310.0041
SER 1320.0035
ASN 1330.0027
SER 1340.0023
ILE 1350.0022
GLN 1360.0027
LYS 1370.0027
ILE 1380.0036
LYS 1390.0042
ASN 1400.0052
ASN 1410.0052
PRO 1420.0057
PHE 1430.0054
VAL 1440.0057
LYS 1450.0072
GLN 1460.0071
LYS 1470.0073
ASN 1480.0079
LEU 1490.0070
ILE 1500.0070
THR 1510.0058
LEU 1520.0050
ASP 1530.0047
LEU 1540.0039
SER 1550.0039
HIS 1560.0036
ASN 1570.0036
GLY 1580.0034
LEU 1590.0033
SER 1600.0031
SER 1610.0033
THR 1620.0027
LYS 1630.0038
LEU 1640.0040
GLY 1650.0050
THR 1660.0055
GLN 1670.0053
VAL 1680.0038
GLN 1690.0033
LEU 1700.0029
GLU 1710.0023
ASN 1720.0029
LEU 1730.0027
GLN 1740.0033
GLU 1750.0035
LEU 1760.0019
LEU 1770.0024
LEU 1780.0020
SER 1790.0024
ASN 1800.0027
ASN 1810.0028
LYS 1820.0029
ILE 1830.0022
GLN 1840.0020
ALA 1850.0021
LEU 1860.0032
LYS 1870.0053
SER 1880.0067
GLU 1890.0074
GLU 1900.0053
LEU 1910.0043
ASP 1920.0062
ILE 1930.0049
PHE 1940.0035
ALA 1950.0058
ASN 1960.0047
SER 1970.0033
SER 1980.0040
LEU 1990.0034
LYS 2000.0046
LYS 2010.0038
LEU 2020.0028
GLU 2030.0025
LEU 2040.0017
SER 2050.0024
SER 2060.0023
ASN 2070.0015
GLN 2080.0019
ILE 2090.0007
LYS 2100.0007
GLU 2110.0015
PHE 2120.0034
SER 2130.0050
PRO 2140.0070
GLY 2150.0082
CYS 2160.0057
PHE 2170.0059
HIS 2180.0077
ALA 2190.0069
ILE 2200.0061
GLY 2210.0073
ARG 2220.0073
LEU 2230.0064
PHE 2240.0073
GLY 2250.0065
LEU 2260.0050
PHE 2270.0046
LEU 2280.0035
ASN 2290.0042
ASN 2300.0039
VAL 2310.0030
GLN 2320.0039
LEU 2330.0038
GLY 2340.0052
PRO 2350.0058
SER 2360.0045
LEU 2370.0037
THR 2380.0053
GLU 2390.0056
LYS 2400.0044
LEU 2410.0051
CYS 2420.0069
LEU 2430.0067
GLU 2440.0063
LEU 2450.0076
ALA 2460.0083
ASN 2470.0091
THR 2480.0080
SER 2490.0082
ILE 2500.0076
ARG 2510.0075
ASN 2520.0070
LEU 2530.0058
SER 2540.0057
LEU 2550.0049
SER 2560.0047
ASN 2570.0046
SER 2580.0042
GLN 2590.0047
LEU 2600.0049
SER 2610.0062
THR 2620.0064
THR 2630.0065
SER 2640.0065
ASN 2650.0070
THR 2660.0068
THR 2670.0068
PHE 2680.0075
LEU 2690.0074
GLY 2700.0071
LEU 2710.0080
LYS 2720.0086
TRP 2730.0084
THR 2740.0080
ASN 2750.0081
LEU 2760.0059
THR 2770.0065
MET 2780.0064
LEU 2790.0060
ASP 2800.0060
LEU 2810.0039
SER 2820.0041
TYR 2830.0040
ASN 2840.0038
ASN 2850.0046
LEU 2860.0061
ASN 2870.0063
VAL 2880.0060
VAL 2890.0061
GLY 2900.0061
ASN 2910.0066
ASP 2920.0065
SER 2930.0069
PHE 2940.0069
ALA 2950.0066
TRP 2960.0074
LEU 2970.0069
PRO 2980.0066
GLN 2990.0062
LEU 3000.0061
GLU 3010.0046
TYR 3020.0049
PHE 3030.0045
PHE 3040.0050
LEU 3050.0048
GLU 3060.0047
TYR 3070.0045
ASN 3080.0045
ASN 3090.0052
ILE 3100.0054
GLN 3110.0056
HIS 3120.0048
LEU 3130.0048
PHE 3140.0048
SER 3150.0055
HIS 3160.0053
SER 3170.0055
LEU 3180.0051
HIS 3190.0050
GLY 3200.0050
LEU 3210.0043
PHE 3220.0032
ASN 3230.0036
VAL 3240.0034
ARG 3250.0025
TYR 3260.0027
LEU 3270.0023
ASN 3280.0025
LEU 3290.0024
LYS 3300.0030
ARG 3310.0046
SER 3320.0033
PHE 3330.0047
THR 3340.0060
LYS 3350.0080
GLN 3360.0095
SER 3370.0122
ILE 3380.0158
SER 3390.0183
LEU 3400.0152
ALA 3410.0104
SER 3420.0071
LEU 3430.0061
PRO 3440.0039
LYS 3450.0065
ILE 3460.0029
ASP 3470.0032
ASP 3480.0034
PHE 3490.0030
SER 3500.0021
PHE 3510.0026
GLN 3520.0020
TRP 3530.0017
LEU 3540.0015
LYS 3550.0019
CYS 3560.0028
LEU 3570.0024
GLU 3580.0029
HIS 3590.0026
LEU 3600.0031
ASN 3610.0011
MET 3620.0014
GLU 3630.0013
ASP 3640.0020
ASN 3650.0025
ASP 3660.0040
ILE 3670.0041
PRO 3680.0046
GLY 3690.0048
ILE 3700.0050
LYS 3710.0077
SER 3720.0079
ASN 3730.0069
MET 3740.0065
PHE 3750.0063
THR 3760.0068
GLY 3770.0060
LEU 3780.0057
ILE 3790.0066
ASN 3800.0059
LEU 3810.0073
LYS 3820.0068
TYR 3830.0064
LEU 3840.0065
SER 3850.0061
LEU 3860.0061
SER 3870.0057
ASN 3880.0061
SER 3890.0066
PHE 3900.0069
THR 3910.0066
SER 3920.0080
LEU 3930.0090
ARG 3940.0100
THR 3950.0115
LEU 3960.0101
THR 3970.0112
ASN 3980.0114
GLU 3990.0132
THR 4000.0125
PHE 4010.0110
VAL 4020.0120
SER 4030.0118
LEU 4040.0109
ALA 4050.0116
HIS 4060.0117
SER 4070.0108
PRO 4080.0105
LEU 4090.0100
HIS 4100.0097
ILE 4110.0091
LEU 4120.0088
ASN 4130.0085
LEU 4140.0084
THR 4150.0081
LYS 4160.0086
ASN 4170.0097
LYS 4180.0097
ILE 4190.0094
SER 4200.0095
LYS 4210.0092
ILE 4220.0077
GLU 4230.0077
SER 4240.0062
ASP 4250.0078
ALA 4260.0097
PHE 4270.0095
SER 4280.0100
TRP 4290.0117
LEU 4300.0111
GLY 4310.0104
HIS 4320.0112
LEU 4330.0102
GLU 4340.0097
VAL 4350.0090
LEU 4360.0077
ASP 4370.0077
LEU 4380.0069
GLY 4390.0070
LEU 4400.0088
ASN 4410.0101
GLU 4420.0104
ILE 4430.0077
GLY 4440.0082
GLN 4450.0061
GLU 4460.0072
LEU 4470.0040
THR 4480.0050
GLY 4490.0046
GLN 4500.0039
GLU 4510.0036
TRP 4520.0049
ARG 4530.0066
GLY 4540.0093
LEU 4550.0090
GLU 4560.0100
ASN 4570.0112
ILE 4580.0089
PHE 4590.0092
GLU 4600.0072
ILE 4610.0047
TYR 4620.0042
LEU 4630.0031
SER 4640.0043
TYR 4650.0067
ASN 4660.0084
LYS 4670.0108
TYR 4680.0095
LEU 4690.0068
GLN 4700.0085
LEU 4710.0091
THR 4720.0118
ARG 4730.0143
ASN 4740.0122
SER 4750.0077
PHE 4760.0073
ALA 4770.0104
LEU 4780.0104
VAL 4790.0099
PRO 4800.0119
SER 4810.0112
LEU 4820.0087
GLN 4830.0082
ARG 4840.0059
LEU 4850.0041
MET 4860.0015
LEU 4870.0024
ARG 4880.0029
ARG 4890.0057
VAL 4900.0062
ALA 4910.0097
LEU 4920.0086
LYS 4930.0108
ASN 4940.0119
VAL 4950.0110
ASP 4960.0129
SER 4970.0145
SER 4980.0171
PRO 4990.0159
SER 5000.0120
PRO 5010.0089
PHE 5020.0082
GLN 5030.0109
PRO 5040.0112
LEU 5050.0094
ARG 5060.0075
ASN 5070.0072
LEU 5080.0062
THR 5090.0053
ILE 5100.0049
LEU 5110.0040
ASP 5120.0029
LEU 5130.0039
SER 5140.0034
ASN 5150.0043
ASN 5160.0055
ASN 5170.0057
ILE 5180.0058
ALA 5190.0063
ASN 5200.0063
ILE 5210.0069
ASN 5220.0071
ASP 5230.0054
ASP 5240.0064
MET 5250.0063
LEU 5260.0041
GLU 5270.0049
GLY 5280.0048
LEU 5290.0038
GLU 5300.0037
LYS 5310.0033
LEU 5320.0030
GLU 5330.0036
ILE 5340.0040
LEU 5350.0033
ASP 5360.0037
LEU 5370.0033
GLN 5380.0032
HIS 5390.0035
ASN 5400.0035
ASN 5410.0058
LEU 5420.0034
ALA 5430.0047
ARG 5440.0058
LEU 5450.0039
TRP 5460.0060
LYS 5470.0092
HIS 5480.0121
ALA 5490.0146
ASN 5500.0129
PRO 5510.0184
GLY 5520.0167
GLY 5530.0146
PRO 5540.0089
ILE 5550.0051
TYR 5560.0047
PHE 5570.0033
LEU 5580.0039
LYS 5590.0056
GLY 5600.0068
LEU 5610.0055
SER 5620.0071
HIS 5630.0067
LEU 5640.0056
HIS 5650.0065
ILE 5660.0056
LEU 5670.0038
ASN 5680.0033
LEU 5690.0018
GLU 5700.0028
SER 5710.0047
ASN 5720.0034
GLY 5730.0047
PHE 5740.0035
ASP 5750.0051
GLU 5760.0061
ILE 5770.0053
PRO 5780.0074
VAL 5790.0085
GLU 5800.0089
VAL 5810.0066
PHE 5820.0067
LYS 5830.0088
ASP 5840.0093
LEU 5850.0080
PHE 5860.0104
GLU 5870.0101
LEU 5880.0072
LYS 5890.0072
ILE 5900.0053
ILE 5910.0037
ASP 5920.0035
LEU 5930.0021
GLY 5940.0038
LEU 5950.0051
ASN 5960.0046
ASN 5970.0051
LEU 5980.0034
ASN 5990.0035
THR 6000.0031
LEU 6010.0036
PRO 6020.0052
ALA 6030.0052
SER 6040.0054
VAL 6050.0049
PHE 6060.0046
ASN 6070.0063
ASN 6080.0077
GLN 6090.0066
VAL 6100.0079
SER 6110.0080
LEU 6120.0056
LYS 6130.0068
SER 6140.0055
LEU 6150.0037
ASN 6160.0046
LEU 6170.0041
GLN 6180.0053
LYS 6190.0058
ASN 6200.0050
LEU 6210.0047
ILE 6220.0046
THR 6230.0043
SER 6240.0044
VAL 6250.0044
GLU 6260.0034
LYS 6270.0029
LYS 6280.0025
VAL 6290.0017
PHE 6300.0015
GLY 6310.0017
PRO 6320.0019
ALA 6330.0019
PHE 6340.0030
ARG 6350.0037
ASN 6360.0046
LEU 6370.0045
THR 6380.0061
GLU 6390.0060
LEU 6400.0052
ASP 6410.0052
MET 6420.0048
ARG 6430.0049
PHE 6440.0050
ASN 6450.0046
PRO 6460.0044
PHE 6470.0048
ASP 6480.0060
CYS 6490.0053
THR 6500.0068
CYS 6510.0089
GLU 6520.0097
SER 6530.0072
ILE 6540.0057
ALA 6550.0076
TRP 6560.0054
PHE 6570.0044
VAL 6580.0034
ASN 6590.0051
TRP 6600.0059
ILE 6610.0075
ASN 6620.0092
GLU 6630.0112
THR 6640.0135
HIS 6650.0175
THR 6660.0050
ASN 6670.0045
ILE 6680.0045
PRO 6690.0042
GLU 6700.0042
LEU 6710.0036
SER 6720.0025
SER 6730.0018
HIS 6740.0027
TYR 6750.0025
LEU 6760.0013
CYS 6770.0032
ASN 6780.0061
THR 6790.0082
PRO 6800.0085
PRO 6810.0116
HIS 6820.0089
TYR 6830.0056
HIS 6840.0083
GLY 6850.0077
PHE 6860.0051
PRO 6870.0032
VAL 6880.0019
ARG 6890.0051
LEU 6900.0059
PHE 6910.0028
ASP 6920.0057
THR 6930.0113
SER 6940.0151
SER 6950.0154
CYS 6960.0204
GLU 10.0214
ALA 20.0177
ALA 30.0180
ALA 40.0154
LYS 50.0130
MET 60.0140
GLN 70.0145
ARG 80.0120
LEU 90.0136
VAL 100.0161
LEU 110.0139
LEU 120.0114
LEU 130.0165
ALA 140.0171
ILE 150.0123
SER 160.0168
LEU 170.0251
LEU 180.0185
LEU 190.0091
TYR 200.0175
GLN 210.0176
ASP 220.0245
LEU 230.0279
PRO 240.0245
VAL 250.0216
ARG 260.0235
SER 270.0127
GLU 280.0123
PHE 290.0094
GLU 300.0115
LEU 310.0115
ASP 320.0096
ARG 330.0114
ILE 340.0135
CYS 350.0133
GLY 360.0245
TYR 370.0287
GLY 380.0090
THR 390.0145
ALA 400.0052
ARG 410.0078
CYS 420.0073
ARG 430.0066
LYS 440.0058
LYS 450.0053
CYS 460.0081
ARG 470.0090
SER 480.0117
GLN 490.0092
GLU 500.0077
TYR 510.0084
ARG 520.0065
ILE 530.0078
GLY 540.0068
ARG 550.0061
CYS 560.0081
PRO 570.0085
ASN 580.0067
THR 590.0059
TYR 600.0054
ALA 610.0078
CYS 620.0062
CYS 630.0054
LEU 640.0039
ARG 650.0039
LYS 660.0193
TRP 670.0317
ASP 680.0131
GLU 690.0134
SER 700.0305
LEU 710.0311
LEU 720.0145
ASN 730.0123
ARG 740.0288
THR 750.0239
LYS 760.0160
PRO 770.0202
GLU 780.0261
ALA 790.0323
ALA 800.0293
ALA 810.0261
LYS 820.0257
LYS 830.0209
GLU 840.0181
MET 850.0178
ASN 860.0120
LEU 870.0059
SER 880.0060
VAL 890.0016
GLY 900.0033
LEU 910.0042
GLY 920.0140
GLY 930.0362
GLY 940.0418
SER 950.0310
ASN 960.0104
LEU 970.0100
SER 980.0120
VAL 990.0101
GLY 1000.0143
LEU 1010.0198
GLY 1020.0294
GLU 1030.0266
ILE 1040.0173
GLY 1050.0130
GLY 1060.0392
GLY 1070.0347
SER 1080.0325
LYS 1090.0192
LEU 1100.0178
LEU 1110.0098
ASP 1120.0091
ILE 1130.0090
ASN 1140.0088
LEU 1150.0087
GLY 1160.0141
ARG 1170.0208
GLY 1180.0186
GLY 1190.0224
GLY 1200.0226
SER 1210.0134
MET 1220.0133
VAL 1230.0105
ASP 1240.0107
LEU 1250.0089
THR 1260.0125
PHE 1270.0138
GLY 1280.0211
GLY 1290.0233
VAL 1300.0262
GLY 1310.0205
GLY 1320.0201
GLY 1330.0145
SER 1340.0231
THR 1350.0220
PHE 1360.0223
THR 1370.0184
PHE 1380.0124
PHE 1390.0098
PRO 1400.0065
LEU 1410.0116
VAL 1420.0222
ILE 1430.0212
GLY 1440.0315
GLY 1450.0384
GLY 1460.0386
SER 1470.0321
ASP 1480.0204
ALA 1490.0223
MET 1500.0132
TYR 1510.0112
LEU 1520.0133
GLY 1530.0161
PHE 1540.0211
ALA 1550.0261
ALA 1560.0368
GLY 1570.0349
GLY 1580.0314
GLY 1590.0236
SER 1600.0135
ALA 1610.0160
GLY 1620.0076
GLY 1630.0092
GLU 1640.0103
ASN 1650.0074
HIS 1660.0104
VAL 1670.0103
ALA 1680.0111
PHE 1690.0113
GLY 1700.0127
PRO 1710.0197
GLY 1720.0303
PRO 1730.0381
GLY 1740.0243
VAL 1750.0115
ASP 1760.0077
LEU 1770.0087
THR 1780.0065
PHE 1790.0090
GLY 1800.0092
GLY 1810.0099
VAL 1820.0083
GLN 1830.0063
PHE 1840.0074
ALA 1850.0089
MET 1860.0121
VAL 1870.0143
ASN 1880.0151
ASN 1890.0152
GLY 1900.0215
PRO 1910.0156
GLY 1920.0194
PRO 1930.0225
GLY 1940.0193
GLU 1950.0196
SER 1960.0364
PHE 1970.0138
THR 1980.0127
ALA 1990.0152
GLN 2000.0229
PRO 2010.0193
ALA 2020.0079
ASP 2030.0196
MET 2040.0139
GLN 2050.0098
ALA 2060.0402
GLY 2070.0262
ILE 2080.0115
LYS 2090.0157
GLY 2100.0278
PRO 2110.0320
GLY 2120.0203
PRO 2130.0118
GLY 2140.0282
GLY 2150.0127
SER 2160.0286
ILE 2170.0226
GLN 2180.0199
VAL 2190.0171
ILE 2200.0175
ASN 2210.0452
GLY 2220.0365
SER 2230.0258
THR 2240.0117
ILE 2250.0139
GLY 2260.0084
THR 2270.0086
GLY 2280.0102
SER 2290.0186
LYS 2300.0163
LYS 2310.0095
THR 2320.0097
ILE 2330.0053
LEU 2340.0079
ILE 2350.0065
TYR 2360.0089
SER 2370.0079
ILE 2380.0076
ILE 2390.0054
GLY 2400.0065
VAL 2410.0062
LYS 2420.0099
LYS 2430.0119
GLY 2440.0103
THR 2450.0069
LEU 2460.0052
ALA 2470.0025
TRP 2480.0009
ALA 2490.0050
ARG 2500.0072
THR 2510.0159
GLY 2520.0170
PHE 2530.0136
SER 2540.0128
PRO 2550.0171
ALA 2560.0255
LYS 2570.0187
LYS 2580.0071
LEU 2590.0068
ASN 2600.0119
ALA 2610.0091
GLY 2620.0147
VAL 2630.0097
VAL 2640.0244
ARG 2650.0207
VAL 2660.0154
PHE 2670.0121
PHE 2680.0066
LEU 2690.0080
ASN 2700.0072
GLN 2710.0075
LYS 2720.0103
LYS 2730.0126
ALA 2740.0099
LYS 2750.0036
ASP 2760.0012
VAL 2770.0103
LEU 2780.0161
ARG 2790.0130
LYS 2800.0020
THR 2810.0045
SER 2820.0014
ARG 2830.0015
PRO 2840.0038
MET 2850.0038
VAL 2860.0075
ASP 2870.0042
LEU 2880.0049
THR 2890.0041
PHE 2900.0034
GLY 2910.0054
GLY 2920.0085

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.