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***  TLR_3_simulation  ***

<R2> analysis for 2608260325273940753

---  normal mode 98  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0646
THR 260.0031
LYS 270.0030
CYS 280.0030
THR 290.0029
VAL 300.0029
SER 310.0030
HIS 320.0029
GLU 330.0020
VAL 340.0026
ALA 350.0021
ASP 360.0023
CYS 370.0023
SER 380.0022
HIS 390.0023
LEU 400.0023
LYS 410.0021
LEU 420.0025
THR 430.0026
GLN 440.0031
VAL 450.0033
PRO 460.0036
ASP 470.0037
ASP 480.0037
LEU 490.0033
PRO 500.0032
THR 510.0029
ASN 520.0028
ILE 530.0025
THR 540.0023
VAL 550.0020
LEU 560.0019
ASN 570.0018
LEU 580.0017
THR 590.0016
HIS 600.0015
ASN 610.0014
GLN 620.0015
LEU 630.0019
ARG 640.0022
ARG 650.0026
LEU 660.0024
PRO 670.0032
ALA 680.0034
ALA 690.0040
ASN 700.0036
PHE 710.0032
THR 720.0035
ARG 730.0036
TYR 740.0031
SER 750.0031
GLN 760.0026
LEU 770.0021
THR 780.0016
SER 790.0013
LEU 800.0013
ASP 810.0010
VAL 820.0009
GLY 830.0005
PHE 840.0005
ASN 850.0005
THR 860.0010
ILE 870.0012
SER 880.0022
LYS 890.0023
LEU 900.0017
GLU 910.0024
PRO 920.0024
GLU 930.0026
LEU 940.0019
CYS 950.0014
GLN 960.0026
LYS 970.0027
LEU 980.0021
PRO 990.0019
MET 1000.0016
LEU 1010.0006
LYS 1020.0009
VAL 1030.0012
LEU 1040.0011
ASN 1050.0014
LEU 1060.0017
GLN 1070.0022
HIS 1080.0025
ASN 1090.0022
GLU 1100.0026
LEU 1110.0032
SER 1120.0033
GLN 1130.0031
LEU 1140.0027
SER 1150.0026
ASP 1160.0023
LYS 1170.0019
THR 1180.0018
PHE 1190.0018
ALA 1200.0017
PHE 1210.0017
CYS 1220.0014
THR 1230.0016
ASN 1240.0014
LEU 1250.0017
THR 1260.0022
GLU 1270.0025
LEU 1280.0026
HIS 1290.0028
LEU 1300.0030
MET 1310.0033
SER 1320.0037
ASN 1330.0037
SER 1340.0039
ILE 1350.0036
GLN 1360.0036
LYS 1370.0035
ILE 1380.0032
LYS 1390.0033
ASN 1400.0031
ASN 1410.0028
PRO 1420.0029
PHE 1430.0026
VAL 1440.0022
LYS 1450.0023
GLN 1460.0027
LYS 1470.0027
ASN 1480.0027
LEU 1490.0026
ILE 1500.0026
THR 1510.0028
LEU 1520.0029
ASP 1530.0031
LEU 1540.0032
SER 1550.0032
HIS 1560.0036
ASN 1570.0037
GLY 1580.0037
LEU 1590.0032
SER 1600.0029
SER 1610.0032
THR 1620.0025
LYS 1630.0031
LEU 1640.0033
GLY 1650.0037
THR 1660.0032
GLN 1670.0033
VAL 1680.0029
GLN 1690.0028
LEU 1700.0025
GLU 1710.0026
ASN 1720.0026
LEU 1730.0023
GLN 1740.0019
GLU 1750.0019
LEU 1760.0018
LEU 1770.0020
LEU 1780.0019
SER 1790.0018
ASN 1800.0021
ASN 1810.0023
LYS 1820.0021
ILE 1830.0019
GLN 1840.0025
ALA 1850.0035
LEU 1860.0035
LYS 1870.0047
SER 1880.0049
GLU 1890.0056
GLU 1900.0044
LEU 1910.0031
ASP 1920.0038
ILE 1930.0036
PHE 1940.0023
ALA 1950.0026
ASN 1960.0021
SER 1970.0015
SER 1980.0006
LEU 1990.0005
LYS 2000.0007
LYS 2010.0009
LEU 2020.0004
GLU 2030.0007
LEU 2040.0005
SER 2050.0012
SER 2060.0015
ASN 2070.0007
GLN 2080.0017
ILE 2090.0023
LYS 2100.0035
GLU 2110.0043
PHE 2120.0044
SER 2130.0054
PRO 2140.0062
GLY 2150.0058
CYS 2160.0043
PHE 2170.0035
HIS 2180.0039
ALA 2190.0038
ILE 2200.0026
GLY 2210.0023
ARG 2220.0018
LEU 2230.0017
PHE 2240.0017
GLY 2250.0018
LEU 2260.0019
PHE 2270.0020
LEU 2280.0024
ASN 2290.0027
ASN 2300.0028
VAL 2310.0028
GLN 2320.0032
LEU 2330.0034
GLY 2340.0039
PRO 2350.0041
SER 2360.0048
LEU 2370.0042
THR 2380.0042
GLU 2390.0047
LYS 2400.0045
LEU 2410.0042
CYS 2420.0045
LEU 2430.0049
GLU 2440.0045
LEU 2450.0042
ALA 2460.0043
ASN 2470.0041
THR 2480.0034
SER 2490.0027
ILE 2500.0026
ARG 2510.0023
ASN 2520.0023
LEU 2530.0025
SER 2540.0026
LEU 2550.0029
SER 2560.0029
ASN 2570.0032
SER 2580.0031
GLN 2590.0034
LEU 2600.0034
SER 2610.0028
THR 2620.0027
THR 2630.0026
SER 2640.0028
ASN 2650.0030
THR 2660.0037
THR 2670.0034
PHE 2680.0036
LEU 2690.0038
GLY 2700.0038
LEU 2710.0037
LYS 2720.0040
TRP 2730.0038
THR 2740.0032
ASN 2750.0028
LEU 2760.0019
THR 2770.0020
MET 2780.0020
LEU 2790.0020
ASP 2800.0021
LEU 2810.0021
SER 2820.0023
TYR 2830.0025
ASN 2840.0024
ASN 2850.0025
LEU 2860.0019
ASN 2870.0017
VAL 2880.0016
VAL 2890.0017
GLY 2900.0017
ASN 2910.0019
ASP 2920.0020
SER 2930.0021
PHE 2940.0024
ALA 2950.0023
TRP 2960.0027
LEU 2970.0023
PRO 2980.0022
GLN 2990.0019
LEU 3000.0018
GLU 3010.0015
TYR 3020.0015
PHE 3030.0013
PHE 3040.0013
LEU 3050.0012
GLU 3060.0014
TYR 3070.0014
ASN 3080.0013
ASN 3090.0013
ILE 3100.0012
GLN 3110.0009
HIS 3120.0009
LEU 3130.0012
PHE 3140.0013
SER 3150.0017
HIS 3160.0017
SER 3170.0016
LEU 3180.0017
HIS 3190.0018
GLY 3200.0020
LEU 3210.0015
PHE 3220.0015
ASN 3230.0015
VAL 3240.0015
ARG 3250.0014
TYR 3260.0010
LEU 3270.0009
ASN 3280.0008
LEU 3290.0007
LYS 3300.0007
ARG 3310.0006
SER 3320.0006
PHE 3330.0006
THR 3340.0007
LYS 3350.0006
GLN 3360.0015
SER 3370.0016
ILE 3380.0017
SER 3390.0018
LEU 3400.0016
ALA 3410.0014
SER 3420.0014
LEU 3430.0014
PRO 3440.0013
LYS 3450.0013
ILE 3460.0017
ASP 3470.0017
ASP 3480.0019
PHE 3490.0019
SER 3500.0017
PHE 3510.0016
GLN 3520.0016
TRP 3530.0017
LEU 3540.0017
LYS 3550.0017
CYS 3560.0012
LEU 3570.0013
GLU 3580.0012
HIS 3590.0015
LEU 3600.0015
ASN 3610.0011
MET 3620.0011
GLU 3630.0011
ASP 3640.0012
ASN 3650.0012
ASP 3660.0016
ILE 3670.0019
PRO 3680.0021
GLY 3690.0025
ILE 3700.0028
LYS 3710.0024
SER 3720.0024
ASN 3730.0023
MET 3740.0022
PHE 3750.0022
THR 3760.0019
GLY 3770.0018
LEU 3780.0017
ILE 3790.0015
ASN 3800.0015
LEU 3810.0016
LYS 3820.0019
TYR 3830.0020
LEU 3840.0017
SER 3850.0019
LEU 3860.0019
SER 3870.0020
ASN 3880.0022
SER 3890.0021
PHE 3900.0024
THR 3910.0030
SER 3920.0033
LEU 3930.0035
ARG 3940.0038
THR 3950.0042
LEU 3960.0046
THR 3970.0049
ASN 3980.0046
GLU 3990.0049
THR 4000.0046
PHE 4010.0035
VAL 4020.0035
SER 4030.0035
LEU 4040.0034
ALA 4050.0034
HIS 4060.0027
SER 4070.0025
PRO 4080.0028
LEU 4090.0026
HIS 4100.0029
ILE 4110.0027
LEU 4120.0025
ASN 4130.0024
LEU 4140.0023
THR 4150.0023
LYS 4160.0029
ASN 4170.0031
LYS 4180.0036
ILE 4190.0035
SER 4200.0040
LYS 4210.0048
ILE 4220.0047
GLU 4230.0053
SER 4240.0054
ASP 4250.0053
ALA 4260.0045
PHE 4270.0040
SER 4280.0040
TRP 4290.0041
LEU 4300.0038
GLY 4310.0037
HIS 4320.0038
LEU 4330.0034
GLU 4340.0033
VAL 4350.0030
LEU 4360.0027
ASP 4370.0025
LEU 4380.0025
GLY 4390.0023
LEU 4400.0023
ASN 4410.0032
GLU 4420.0039
ILE 4430.0041
GLY 4440.0048
GLN 4450.0050
GLU 4460.0060
LEU 4470.0053
THR 4480.0059
GLY 4490.0050
GLN 4500.0055
GLU 4510.0050
TRP 4520.0042
ARG 4530.0046
GLY 4540.0045
LEU 4550.0037
GLU 4560.0038
ASN 4570.0036
ILE 4580.0030
PHE 4590.0026
GLU 4600.0023
ILE 4610.0019
TYR 4620.0016
LEU 4630.0019
SER 4640.0015
TYR 4650.0016
ASN 4660.0028
LYS 4670.0036
TYR 4680.0041
LEU 4690.0041
GLN 4700.0048
LEU 4710.0049
THR 4720.0058
ARG 4730.0060
ASN 4740.0055
SER 4750.0045
PHE 4760.0038
ALA 4770.0044
LEU 4780.0043
VAL 4790.0032
PRO 4800.0028
SER 4810.0020
LEU 4820.0014
GLN 4830.0009
ARG 4840.0011
LEU 4850.0008
MET 4860.0013
LEU 4870.0017
ARG 4880.0018
ARG 4890.0017
VAL 4900.0019
ALA 4910.0029
LEU 4920.0030
LYS 4930.0042
ASN 4940.0048
VAL 4950.0043
ASP 4960.0038
SER 4970.0050
SER 4980.0066
PRO 4990.0065
SER 5000.0047
PRO 5010.0043
PHE 5020.0037
GLN 5030.0048
PRO 5040.0045
LEU 5050.0034
ARG 5060.0050
ASN 5070.0039
LEU 5080.0029
THR 5090.0035
ILE 5100.0026
LEU 5110.0025
ASP 5120.0025
LEU 5130.0027
SER 5140.0029
ASN 5150.0029
ASN 5160.0028
ASN 5170.0025
ILE 5180.0025
ALA 5190.0025
ASN 5200.0024
ILE 5210.0025
ASN 5220.0032
ASP 5230.0040
ASP 5240.0045
MET 5250.0038
LEU 5260.0038
GLU 5270.0051
GLY 5280.0058
LEU 5290.0049
GLU 5300.0063
LYS 5310.0065
LEU 5320.0056
GLU 5330.0059
ILE 5340.0052
LEU 5350.0042
ASP 5360.0038
LEU 5370.0036
GLN 5380.0034
HIS 5390.0033
ASN 5400.0033
ASN 5410.0038
LEU 5420.0036
ALA 5430.0034
ARG 5440.0040
LEU 5450.0039
TRP 5460.0038
LYS 5470.0047
HIS 5480.0063
ALA 5490.0074
ASN 5500.0074
PRO 5510.0112
GLY 5520.0109
GLY 5530.0082
PRO 5540.0048
ILE 5550.0040
TYR 5560.0037
PHE 5570.0044
LEU 5580.0041
LYS 5590.0041
GLY 5600.0049
LEU 5610.0053
SER 5620.0058
HIS 5630.0061
LEU 5640.0056
HIS 5650.0058
ILE 5660.0047
LEU 5670.0039
ASN 5680.0037
LEU 5690.0029
GLU 5700.0028
SER 5710.0027
ASN 5720.0025
GLY 5730.0019
PHE 5740.0018
ASP 5750.0019
GLU 5760.0027
ILE 5770.0024
PRO 5780.0030
VAL 5790.0032
GLU 5800.0029
VAL 5810.0026
PHE 5820.0026
LYS 5830.0030
ASP 5840.0039
LEU 5850.0037
PHE 5860.0043
GLU 5870.0044
LEU 5880.0040
LYS 5890.0037
ILE 5900.0042
ILE 5910.0013
ASP 5920.0016
LEU 5930.0010
GLY 5940.0018
LEU 5950.0019
ASN 5960.0015
ASN 5970.0018
LEU 5980.0022
ASN 5990.0033
THR 6000.0040
LEU 6010.0028
PRO 6020.0033
ALA 6030.0039
SER 6040.0036
VAL 6050.0027
PHE 6060.0020
ASN 6070.0031
ASN 6080.0030
GLN 6090.0018
VAL 6100.0020
SER 6110.0012
LEU 6120.0008
LYS 6130.0014
SER 6140.0020
LEU 6150.0018
ASN 6160.0025
LEU 6170.0026
GLN 6180.0027
LYS 6190.0028
ASN 6200.0029
LEU 6210.0047
ILE 6220.0047
THR 6230.0049
SER 6240.0049
VAL 6250.0047
GLU 6260.0045
LYS 6270.0045
LYS 6280.0043
VAL 6290.0038
PHE 6300.0038
GLY 6310.0039
PRO 6320.0037
ALA 6330.0030
PHE 6340.0038
ARG 6350.0044
ASN 6360.0037
LEU 6370.0035
THR 6380.0039
GLU 6390.0036
LEU 6400.0031
ASP 6410.0041
MET 6420.0040
ARG 6430.0041
PHE 6440.0043
ASN 6450.0042
PRO 6460.0065
PHE 6470.0053
ASP 6480.0046
CYS 6490.0037
THR 6500.0034
CYS 6510.0040
GLU 6520.0052
SER 6530.0050
ILE 6540.0040
ALA 6550.0034
TRP 6560.0035
PHE 6570.0040
VAL 6580.0037
ASN 6590.0034
TRP 6600.0039
ILE 6610.0034
ASN 6620.0024
GLU 6630.0025
THR 6640.0036
HIS 6650.0043
THR 6660.0044
ASN 6670.0046
ILE 6680.0045
PRO 6690.0053
GLU 6700.0054
LEU 6710.0052
SER 6720.0052
SER 6730.0061
HIS 6740.0060
TYR 6750.0051
LEU 6760.0073
CYS 6770.0063
ASN 6780.0076
THR 6790.0065
PRO 6800.0052
PRO 6810.0086
HIS 6820.0084
TYR 6830.0075
HIS 6840.0096
GLY 6850.0109
PHE 6860.0087
PRO 6870.0075
VAL 6880.0052
ARG 6890.0042
LEU 6900.0050
PHE 6910.0062
ASP 6920.0072
THR 6930.0061
SER 6940.0107
SER 6950.0107
CYS 6960.0094
GLU 10.0077
ALA 20.0071
ALA 30.0035
ALA 40.0027
LYS 50.0039
MET 60.0024
GLN 70.0011
ARG 80.0013
LEU 90.0015
VAL 100.0013
LEU 110.0009
LEU 120.0009
LEU 130.0005
ALA 140.0008
ILE 150.0010
SER 160.0012
LEU 170.0016
LEU 180.0019
LEU 190.0013
TYR 200.0017
GLN 210.0031
ASP 220.0033
LEU 230.0035
PRO 240.0033
VAL 250.0031
ARG 260.0043
SER 270.0054
GLU 280.0039
PHE 290.0059
GLU 300.0064
LEU 310.0046
ASP 320.0036
ARG 330.0039
ILE 340.0038
CYS 350.0031
GLY 360.0043
TYR 370.0057
GLY 380.0046
THR 390.0044
ALA 400.0031
ARG 410.0034
CYS 420.0033
ARG 430.0032
LYS 440.0033
LYS 450.0033
CYS 460.0038
ARG 470.0040
SER 480.0041
GLN 490.0031
GLU 500.0027
TYR 510.0031
ARG 520.0029
ILE 530.0032
GLY 540.0029
ARG 550.0027
CYS 560.0029
PRO 570.0029
ASN 580.0028
THR 590.0026
TYR 600.0026
ALA 610.0029
CYS 620.0023
CYS 630.0023
LEU 640.0023
ARG 650.0025
LYS 660.0054
TRP 670.0077
ASP 680.0061
GLU 690.0034
SER 700.0102
LEU 710.0100
LEU 720.0047
ASN 730.0068
ARG 740.0091
THR 750.0048
LYS 760.0049
PRO 770.0067
GLU 780.0103
ALA 790.0134
ALA 800.0119
ALA 810.0090
LYS 820.0113
LYS 830.0102
GLU 840.0148
MET 850.0139
ASN 860.0173
LEU 870.0165
SER 880.0163
VAL 890.0157
GLY 900.0156
LEU 910.0121
GLY 920.0343
GLY 930.0615
GLY 940.0646
SER 950.0378
ASN 960.0153
LEU 970.0123
SER 980.0148
VAL 990.0152
GLY 1000.0175
LEU 1010.0198
GLY 1020.0199
GLU 1030.0182
ILE 1040.0191
GLY 1050.0179
GLY 1060.0129
GLY 1070.0116
SER 1080.0116
LYS 1090.0157
LEU 1100.0172
LEU 1110.0062
ASP 1120.0077
ILE 1130.0103
ASN 1140.0129
LEU 1150.0129
GLY 1160.0336
ARG 1170.0357
GLY 1180.0360
GLY 1190.0230
GLY 1200.0143
SER 1210.0149
MET 1220.0131
VAL 1230.0079
ASP 1240.0109
LEU 1250.0102
THR 1260.0122
PHE 1270.0119
GLY 1280.0111
GLY 1290.0115
VAL 1300.0110
GLY 1310.0052
GLY 1320.0104
GLY 1330.0118
SER 1340.0170
THR 1350.0191
PHE 1360.0198
THR 1370.0205
PHE 1380.0206
PHE 1390.0215
PRO 1400.0216
LEU 1410.0277
VAL 1420.0272
ILE 1430.0288
GLY 1440.0364
GLY 1450.0528
GLY 1460.0308
SER 1470.0221
ASP 1480.0259
ALA 1490.0235
MET 1500.0292
TYR 1510.0271
LEU 1520.0257
GLY 1530.0258
PHE 1540.0246
ALA 1550.0246
ALA 1560.0224
GLY 1570.0222
GLY 1580.0178
GLY 1590.0137
SER 1600.0082
ALA 1610.0165
GLY 1620.0164
GLY 1630.0144
GLU 1640.0142
ASN 1650.0128
HIS 1660.0147
VAL 1670.0139
ALA 1680.0138
PHE 1690.0139
GLY 1700.0141
PRO 1710.0467
GLY 1720.0400
PRO 1730.0281
GLY 1740.0075
VAL 1750.0140
ASP 1760.0209
LEU 1770.0080
THR 1780.0107
PHE 1790.0098
GLY 1800.0192
GLY 1810.0503
VAL 1820.0469
GLN 1830.0360
PHE 1840.0205
ALA 1850.0194
MET 1860.0178
VAL 1870.0204
ASN 1880.0191
ASN 1890.0300
GLY 1900.0296
PRO 1910.0527
GLY 1920.0407
PRO 1930.0130
GLY 1940.0254
GLU 1950.0258
SER 1960.0295
PHE 1970.0168
THR 1980.0048
ALA 1990.0129
GLN 2000.0286
PRO 2010.0133
ALA 2020.0164
ASP 2030.0286
MET 2040.0099
GLN 2050.0302
ALA 2060.0208
GLY 2070.0103
ILE 2080.0231
LYS 2090.0189
GLY 2100.0510
PRO 2110.0169
GLY 2120.0146
PRO 2130.0174
GLY 2140.0438
GLY 2150.0387
SER 2160.0136
ILE 2170.0186
GLN 2180.0177
VAL 2190.0097
ILE 2200.0137
ASN 2210.0422
GLY 2220.0347
SER 2230.0262
THR 2240.0183
ILE 2250.0211
GLY 2260.0277
THR 2270.0294
GLY 2280.0296
SER 2290.0245
LYS 2300.0191
LYS 2310.0144
THR 2320.0141
ILE 2330.0100
LEU 2340.0148
ILE 2350.0175
TYR 2360.0182
SER 2370.0155
ILE 2380.0142
ILE 2390.0126
GLY 2400.0117
VAL 2410.0115
LYS 2420.0225
LYS 2430.0297
GLY 2440.0358
THR 2450.0326
LEU 2460.0133
ALA 2470.0081
TRP 2480.0102
ALA 2490.0081
ARG 2500.0130
THR 2510.0342
GLY 2520.0365
PHE 2530.0227
SER 2540.0219
PRO 2550.0359
ALA 2560.0440
LYS 2570.0404
LYS 2580.0280
LEU 2590.0348
ASN 2600.0329
ALA 2610.0397
GLY 2620.0344
VAL 2630.0212
VAL 2640.0620
ARG 2650.0363
VAL 2660.0302
PHE 2670.0218
PHE 2680.0120
LEU 2690.0079
ASN 2700.0054
GLN 2710.0083
LYS 2720.0086
LYS 2730.0111
ALA 2740.0101
LYS 2750.0054
ASP 2760.0017
VAL 2770.0097
LEU 2780.0185
ARG 2790.0168
LYS 2800.0055
THR 2810.0051
SER 2820.0035
ARG 2830.0046
PRO 2840.0045
MET 2850.0043
VAL 2860.0046
ASP 2870.0026
LEU 2880.0043
THR 2890.0045
PHE 2900.0033
GLY 2910.0045
GLY 2920.0028

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.