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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 10  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.1436
GLU 270.0095
PRO 280.0090
CYS 290.0086
VAL 300.0083
GLU 310.0085
VAL 320.0080
VAL 330.0083
PRO 340.0089
ASN 350.0090
ILE 360.0084
THR 370.0080
TYR 380.0081
GLN 390.0077
CYS 400.0080
MET 410.0074
GLU 420.0074
LEU 430.0081
ASN 440.0081
PHE 450.0084
TYR 460.0086
LYS 470.0089
ILE 480.0088
PRO 490.0091
ASP 500.0096
ASN 510.0098
LEU 520.0094
PRO 530.0095
PHE 540.0094
SER 550.0090
THR 560.0086
LYS 570.0080
ASN 580.0076
LEU 590.0077
ASP 600.0073
LEU 610.0075
SER 620.0070
PHE 630.0069
ASN 640.0075
PRO 650.0077
LEU 660.0080
ARG 670.0079
HIS 680.0082
LEU 690.0083
GLY 700.0089
SER 710.0090
TYR 720.0091
SER 730.0089
PHE 740.0087
PHE 750.0092
SER 760.0093
PHE 770.0088
PRO 780.0088
GLU 790.0085
LEU 800.0080
GLN 810.0074
VAL 820.0070
LEU 830.0072
ASP 840.0068
LEU 850.0070
SER 860.0064
ARG 870.0064
CYS 880.0071
GLU 890.0070
ILE 900.0073
GLN 910.0074
THR 920.0078
ILE 930.0079
GLU 940.0084
ASP 950.0085
GLY 960.0086
ALA 970.0084
TYR 980.0081
GLN 990.0085
SER 1000.0087
LEU 1010.0081
SER 1020.0080
HIS 1030.0077
LEU 1040.0074
SER 1050.0068
THR 1060.0065
LEU 1070.0066
ILE 1080.0063
LEU 1090.0064
THR 1100.0059
GLY 1110.0059
ASN 1120.0065
PRO 1130.0065
ILE 1140.0069
GLN 1150.0072
SER 1160.0076
LEU 1170.0074
ALA 1180.0079
LEU 1190.0078
GLY 1200.0081
ALA 1210.0078
PHE 1220.0074
SER 1230.0079
GLY 1240.0080
LEU 1250.0074
SER 1260.0074
SER 1270.0070
LEU 1280.0066
GLN 1290.0061
LYS 1300.0059
LEU 1310.0060
VAL 1320.0058
ALA 1330.0059
VAL 1340.0054
GLU 1350.0055
THR 1360.0060
ASN 1370.0059
LEU 1380.0059
ALA 1390.0059
SER 1400.0059
LEU 1410.0059
GLU 1420.0063
ASN 1430.0067
PHE 1440.0065
PRO 1450.0069
ILE 1460.0065
GLY 1470.0066
HIS 1480.0069
LEU 1490.0066
LYS 1500.0063
THR 1510.0063
LEU 1520.0059
LYS 1530.0054
GLU 1540.0053
LEU 1550.0054
ASN 1560.0052
VAL 1570.0052
ALA 1580.0048
HIS 1590.0049
ASN 1600.0052
LEU 1610.0053
ILE 1620.0052
GLN 1630.0051
SER 1640.0051
PHE 1650.0048
LYS 1660.0052
LEU 1670.0053
PRO 1680.0059
GLU 1690.0060
TYR 1700.0062
PHE 1710.0057
SER 1720.0057
ASN 1730.0061
LEU 1740.0058
THR 1750.0055
ASN 1760.0055
LEU 1770.0052
GLU 1780.0048
HIS 1790.0047
LEU 1800.0047
ASP 1810.0046
LEU 1820.0046
SER 1830.0043
SER 1840.0043
ASN 1850.0046
LYS 1860.0046
ILE 1870.0045
GLN 1880.0043
SER 1890.0043
ILE 1900.0043
TYR 1910.0045
CYS 1920.0045
THR 1930.0050
ASP 1940.0049
LEU 1950.0047
ARG 1960.0050
VAL 1970.0052
LEU 1980.0047
HIS 1990.0046
GLN 2000.0050
MET 2010.0049
PRO 2020.0044
LEU 2030.0045
LEU 2040.0046
ASN 2050.0043
LEU 2060.0043
SER 2070.0041
LEU 2080.0041
ASP 2090.0040
LEU 2100.0039
SER 2110.0037
LEU 2120.0037
ASN 2130.0039
PRO 2140.0038
MET 2150.0037
ASN 2160.0037
PHE 2170.0038
ILE 2180.0038
GLN 2190.0040
PRO 2200.0036
GLY 2210.0037
ALA 2220.0040
PHE 2230.0037
LYS 2240.0035
GLU 2250.0035
ILE 2260.0037
ARG 2270.0035
LEU 2280.0036
HIS 2290.0036
LYS 2300.0035
LEU 2310.0034
THR 2320.0034
LEU 2330.0032
ARG 2340.0031
ASN 2350.0031
ASN 2360.0033
PHE 2370.0030
ASP 2380.0030
SER 2390.0027
LEU 2400.0024
ASN 2410.0027
VAL 2420.0030
MET 2430.0028
LYS 2440.0026
THR 2450.0030
CYS 2460.0032
ILE 2470.0028
GLN 2480.0029
GLY 2490.0033
LEU 2500.0031
ALA 2510.0029
GLY 2520.0029
LEU 2530.0031
GLU 2540.0029
VAL 2550.0030
HIS 2560.0030
ARG 2570.0029
LEU 2580.0028
VAL 2590.0028
LEU 2600.0027
GLY 2610.0026
GLU 2620.0027
PHE 2630.0029
ARG 2640.0027
ASN 2650.0030
GLU 2660.0030
GLY 2670.0029
ASN 2680.0026
LEU 2690.0024
GLU 2700.0022
LYS 2710.0019
PHE 2720.0019
ASP 2730.0017
LYS 2740.0015
SER 2750.0018
ALA 2760.0020
LEU 2770.0020
GLU 2780.0019
GLY 2790.0022
LEU 2800.0022
CYS 2810.0020
ASN 2820.0023
LEU 2830.0025
THR 2840.0024
ILE 2850.0024
GLU 2860.0025
GLU 2870.0025
PHE 2880.0023
ARG 2890.0024
LEU 2900.0023
ALA 2910.0025
TYR 2920.0024
LEU 2930.0021
ASP 2940.0021
TYR 2950.0018
TYR 2960.0016
LEU 2970.0015
ASP 2980.0012
GLY 2990.0012
ILE 3000.0014
ILE 3010.0012
ASP 3020.0012
LEU 3030.0014
PHE 3040.0016
ASN 3050.0014
CYS 3060.0016
LEU 3070.0017
THR 3080.0016
ASN 3090.0017
VAL 3100.0020
SER 3110.0022
SER 3120.0022
PHE 3130.0021
SER 3140.0022
LEU 3150.0020
VAL 3160.0022
SER 3170.0021
VAL 3180.0019
THR 3190.0017
ILE 3200.0016
GLU 3210.0014
ARG 3220.0014
VAL 3230.0015
LYS 3240.0014
ASP 3250.0014
PHE 3260.0016
SER 3270.0015
TYR 3280.0014
ASN 3290.0015
PHE 3300.0016
GLY 3310.0018
TRP 3320.0019
GLN 3330.0021
HIS 3340.0021
LEU 3350.0020
GLU 3360.0021
LEU 3370.0019
VAL 3380.0020
ASN 3390.0020
CYS 3400.0019
LYS 3410.0018
PHE 3420.0018
GLY 3430.0017
GLN 3440.0018
PHE 3450.0019
PRO 3460.0019
THR 3470.0019
LEU 3480.0019
LYS 3490.0019
LEU 3500.0019
LYS 3510.0019
SER 3520.0020
LEU 3530.0020
LYS 3540.0022
ARG 3550.0021
LEU 3560.0020
THR 3570.0019
PHE 3580.0019
THR 3590.0019
SER 3600.0018
ASN 3610.0019
LYS 3620.0019
GLY 3630.0020
GLY 3640.0020
ASN 3650.0020
ALA 3660.0021
PHE 3670.0023
SER 3680.0023
GLU 3690.0023
VAL 3700.0022
ASP 3710.0022
LEU 3720.0021
PRO 3730.0022
SER 3740.0022
LEU 3750.0021
GLU 3760.0022
PHE 3770.0020
LEU 3780.0019
ASP 3790.0018
LEU 3800.0018
SER 3810.0016
ARG 3820.0014
ASN 3830.0018
GLY 3840.0018
LEU 3850.0020
SER 3860.0023
PHE 3870.0025
LYS 3880.0030
GLY 3890.0032
CYS 3900.0026
CYS 3910.0023
SER 3920.0024
GLN 3930.0024
SER 3940.0028
ASP 3950.0026
PHE 3960.0024
GLY 3970.0024
THR 3980.0023
ILE 3990.0022
SER 4000.0022
LEU 4010.0021
LYS 4020.0016
TYR 4030.0015
LEU 4040.0015
ASP 4050.0014
LEU 4060.0015
SER 4070.0009
PHE 4080.0010
ASN 4090.0015
GLY 4100.0019
VAL 4110.0023
ILE 4120.0023
THR 4130.0029
MET 4140.0029
SER 4150.0034
SER 4160.0032
ASN 4170.0028
PHE 4180.0023
LEU 4190.0027
GLY 4200.0025
LEU 4210.0019
GLU 4220.0018
GLN 4230.0015
LEU 4240.0012
GLU 4250.0007
HIS 4260.0006
LEU 4270.0007
ASP 4280.0005
PHE 4290.0009
GLN 4300.0005
HIS 4310.0006
SER 4320.0012
ASN 4330.0019
LEU 4340.0022
LYS 4350.0030
GLN 4360.0036
MET 4370.0034
SER 4380.0042
GLU 4390.0046
PHE 4400.0043
SER 4410.0037
VAL 4420.0030
PHE 4430.0023
LEU 4440.0028
SER 4450.0024
LEU 4460.0016
ARG 4470.0016
ASN 4480.0007
LEU 4490.0007
ILE 4500.0009
TYR 4510.0010
LEU 4520.0010
ASP 4530.0009
ILE 4540.0013
SER 4550.0014
HIS 4560.0014
THR 4570.0016
HIS 4580.0024
THR 4590.0030
ARG 4600.0039
VAL 4610.0043
ALA 4620.0051
PHE 4630.0051
ASN 4640.0051
GLY 4650.0045
ILE 4660.0037
PHE 4670.0032
ASN 4680.0035
GLY 4690.0029
LEU 4700.0022
SER 4710.0023
SER 4720.0016
LEU 4730.0018
GLU 4740.0022
VAL 4750.0022
LEU 4760.0022
LYS 4770.0022
MET 4780.0024
ALA 4790.0026
GLY 4800.0026
ASN 4810.0029
SER 4820.0040
PHE 4830.0049
GLN 4840.0058
GLU 4850.0066
ASN 4860.0060
PHE 4870.0066
LEU 4880.0059
PRO 4890.0062
ASP 4900.0059
ILE 4910.0049
PHE 4920.0045
THR 4930.0050
GLU 4940.0040
LEU 4950.0034
ARG 4960.0038
ASN 4970.0031
LEU 4980.0033
THR 4990.0038
PHE 5000.0036
LEU 5010.0037
ASP 5020.0035
LEU 5030.0039
SER 5040.0040
GLN 5050.0038
CYS 5060.0040
GLN 5070.0049
LEU 5080.0057
GLU 5090.0069
GLN 5100.0074
LEU 5110.0072
SER 5120.0076
PRO 5130.0082
THR 5140.0075
ALA 5150.0064
PHE 5160.0061
ASN 5170.0066
SER 5180.0057
LEU 5190.0051
SER 5200.0056
SER 5210.0048
LEU 5220.0050
GLN 5230.0054
VAL 5240.0052
LEU 5250.0052
ASN 5260.0049
MET 5270.0054
SER 5280.0054
HIS 5290.0051
ASN 5300.0055
ASN 5310.0064
PHE 5320.0074
PHE 5330.0085
SER 5340.0092
LEU 5350.0091
ASP 5360.0092
THR 5370.0091
PHE 5380.0093
PRO 5390.0080
TYR 5400.0078
LYS 5410.0086
CYS 5420.0076
LEU 5430.0069
ASN 5440.0072
SER 5450.0065
LEU 5460.0067
GLN 5470.0071
VAL 5480.0068
LEU 5490.0068
ASP 5500.0065
TYR 5510.0069
SER 5520.0068
LEU 5530.0065
ASN 5540.0068
HIS 5550.0078
ILE 5560.0087
MET 5570.0099
THR 5580.0106
SER 5590.0107
LYS 5600.0112
LYS 5610.0112
GLN 5620.0120
GLU 5630.0113
LEU 5640.0110
GLN 5650.0113
HIS 5660.0102
PHE 5670.0094
PRO 5680.0089
SER 5690.0095
SER 5700.0085
LEU 5710.0085
ALA 5720.0088
PHE 5730.0084
LEU 5740.0084
ASN 5750.0080
LEU 5760.0084
THR 5770.0083
GLN 5780.0080
ASN 5790.0084
ASP 5800.0089
PHE 5810.0101
ALA 5820.0111
CYS 5830.0121
THR 5840.0131
CYS 5850.0142
GLU 5860.0138
HIS 5870.0128
GLN 5880.0136
SER 5890.0133
PHE 5900.0120
LEU 5910.0124
GLN 5920.0133
TRP 5930.0124
ILE 5940.0116
LYS 5950.0127
ASP 5960.0129
GLN 5970.0116
ARG 5980.0117
GLN 5990.0113
LEU 6000.0101
LEU 6010.0099
VAL 6020.0094
GLU 6030.0098
VAL 6040.0107
GLU 6050.0107
ARG 6060.0096
MET 6070.0098
GLU 6080.0102
CYS 6090.0107
ALA 6100.0100
THR 6110.0106
PRO 6120.0117
SER 6130.0113
ASP 6140.0124
LYS 6150.0122
GLN 6160.0108
GLY 6170.0106
MET 6180.0117
PRO 6190.0115
VAL 6200.0117
LEU 6210.0124
SER 6220.0133
LEU 6230.0135
ASN 6240.0148
ILE 6250.0149
THR 6260.0162
CYS 6270.0163
GLU 10.0669
ALA 20.0636
ALA 30.0597
ALA 40.0550
LYS 50.0518
MET 60.0481
GLN 70.0441
ARG 80.0401
LEU 90.0373
VAL 100.0333
LEU 110.0294
LEU 120.0267
LEU 130.0234
ALA 140.0201
ILE 150.0163
SER 160.0149
LEU 170.0124
LEU 180.0102
LEU 190.0083
TYR 200.0071
GLN 210.0045
ASP 220.0033
LEU 230.0032
PRO 240.0023
VAL 250.0026
ARG 260.0027
SER 270.0026
GLU 280.0030
PHE 290.0029
GLU 300.0027
LEU 310.0028
ASP 320.0032
ARG 330.0032
ILE 340.0031
CYS 350.0035
GLY 360.0032
TYR 370.0030
GLY 380.0029
THR 390.0030
ALA 400.0033
ARG 410.0037
CYS 420.0038
ARG 430.0041
LYS 440.0044
LYS 450.0048
CYS 460.0049
ARG 470.0050
SER 480.0055
GLN 490.0052
GLU 500.0050
TYR 510.0052
ARG 520.0050
ILE 530.0049
GLY 540.0048
ARG 550.0045
CYS 560.0040
PRO 570.0038
ASN 580.0038
THR 590.0043
TYR 600.0043
ALA 610.0045
CYS 620.0043
CYS 630.0045
LEU 640.0045
ARG 650.0046
LYS 660.0051
TRP 670.0049
ASP 680.0050
GLU 690.0054
SER 700.0051
LEU 710.0047
LEU 720.0050
ASN 730.0052
ARG 740.0047
THR 750.0046
LYS 760.0047
PRO 770.0042
GLU 780.0044
ALA 790.0042
ALA 800.0035
ALA 810.0023
LYS 820.0025
LYS 830.0025
GLU 840.0031
MET 850.0031
ASN 860.0037
LEU 870.0037
SER 880.0044
VAL 890.0045
GLY 900.0051
LEU 910.0055
GLY 920.0060
GLY 930.0066
GLY 940.0064
SER 950.0060
ASN 960.0054
LEU 970.0049
SER 980.0046
VAL 990.0040
GLY 1000.0038
LEU 1010.0032
GLY 1020.0032
GLU 1030.0026
ILE 1040.0029
GLY 1050.0028
GLY 1060.0018
GLY 1070.0018
SER 1080.0016
LYS 1090.0021
LEU 1100.0026
LEU 1110.0030
ASP 1120.0033
ILE 1130.0038
ASN 1140.0041
LEU 1150.0045
GLY 1160.0050
ARG 1170.0053
GLY 1180.0058
GLY 1190.0058
GLY 1200.0058
SER 1210.0054
MET 1220.0052
VAL 1230.0047
ASP 1240.0045
LEU 1250.0039
THR 1260.0038
PHE 1270.0033
GLY 1280.0032
GLY 1290.0029
VAL 1300.0024
GLY 1310.0022
GLY 1320.0020
GLY 1330.0022
SER 1340.0023
THR 1350.0025
PHE 1360.0027
THR 1370.0028
PHE 1380.0031
PHE 1390.0031
PRO 1400.0033
LEU 1410.0032
VAL 1420.0035
ILE 1430.0034
GLY 1440.0036
GLY 1450.0038
GLY 1460.0037
SER 1470.0035
ASP 1480.0039
ALA 1490.0034
MET 1500.0034
TYR 1510.0029
LEU 1520.0029
GLY 1530.0025
PHE 1540.0025
ALA 1550.0022
ALA 1560.0021
GLY 1570.0022
GLY 1580.0020
GLY 1590.0023
SER 1600.0024
ALA 1610.0028
GLY 1620.0029
GLY 1630.0033
GLU 1640.0035
ASN 1650.0036
HIS 1660.0040
VAL 1670.0041
ALA 1680.0047
PHE 1690.0048
GLY 1700.0054
PRO 1710.0057
GLY 1720.0058
PRO 1730.0055
GLY 1740.0052
VAL 1750.0047
ASP 1760.0047
LEU 1770.0043
THR 1780.0042
PHE 1790.0038
GLY 1800.0038
GLY 1810.0043
VAL 1820.0044
GLN 1830.0046
PHE 1840.0046
ALA 1850.0050
MET 1860.0048
VAL 1870.0053
ASN 1880.0057
ASN 1890.0059
GLY 1900.0064
PRO 1910.0078
GLY 1920.0094
PRO 1930.0119
GLY 1940.0135
GLU 1950.0121
SER 1960.0137
PHE 1970.0134
THR 1980.0156
ALA 1990.0161
GLN 2000.0173
PRO 2010.0195
ALA 2020.0195
ASP 2030.0166
MET 2040.0182
GLN 2050.0199
ALA 2060.0186
GLY 2070.0224
ILE 2080.0205
LYS 2090.0241
GLY 2100.0283
PRO 2110.0279
GLY 2120.0375
PRO 2130.0412
GLY 2140.0370
GLY 2150.0275
SER 2160.0204
ILE 2170.0143
GLN 2180.0103
VAL 2190.0045
ILE 2200.0024
ASN 2210.0052
GLY 2220.0045
SER 2230.0055
THR 2240.0055
ILE 2250.0051
GLY 2260.0058
THR 2270.0055
GLY 2280.0047
SER 2290.0035
LYS 2300.0032
LYS 2310.0026
THR 2320.0025
ILE 2330.0019
LEU 2340.0020
ILE 2350.0009
TYR 2360.0011
SER 2370.0006
ILE 2380.0007
ILE 2390.0006
GLY 2400.0006
VAL 2410.0013
LYS 2420.0015
LYS 2430.0020
GLY 2440.0024
THR 2450.0021
LEU 2460.0019
ALA 2470.0018
TRP 2480.0021
ALA 2490.0020
ARG 2500.0024
THR 2510.0025
GLY 2520.0032
PHE 2530.0031
SER 2540.0039
PRO 2550.0039
ALA 2560.0043
LYS 2570.0045
LYS 2580.0029
LEU 2590.0028
ASN 2600.0024
ALA 2610.0028
GLY 2620.0019
VAL 2630.0027
VAL 2640.0019
ARG 2650.0016
VAL 2660.0011
PHE 2670.0013
PHE 2680.0017
LEU 2690.0021
ASN 2700.0019
GLN 2710.0017
LYS 2720.0025
LYS 2730.0035
ALA 2740.0035
LYS 2750.0038
ASP 2760.0049
VAL 2770.0060
LEU 2780.0062
ARG 2790.0066
LYS 2800.0073
THR 2810.0078
SER 2820.0117
ARG 2830.0171
PRO 2840.0223
MET 2850.0285
VAL 2860.0439
ASP 2870.0644
LEU 2880.0696
THR 2890.0930
PHE 2900.1097
GLY 2910.1357
GLY 2920.1436

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.