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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 100  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0785
GLU 270.0082
PRO 280.0083
CYS 290.0058
VAL 300.0059
GLU 310.0043
VAL 320.0037
VAL 330.0013
PRO 340.0019
ASN 350.0034
ILE 360.0024
THR 370.0007
TYR 380.0010
GLN 390.0023
CYS 400.0024
MET 410.0034
GLU 420.0042
LEU 430.0040
ASN 440.0035
PHE 450.0022
TYR 460.0017
LYS 470.0014
ILE 480.0013
PRO 490.0032
ASP 500.0057
ASN 510.0070
LEU 520.0043
PRO 530.0045
PHE 540.0053
SER 550.0046
THR 560.0027
LYS 570.0033
ASN 580.0025
LEU 590.0017
ASP 600.0017
LEU 610.0013
SER 620.0026
PHE 630.0027
ASN 640.0020
PRO 650.0021
LEU 660.0018
ARG 670.0026
HIS 680.0030
LEU 690.0028
GLY 700.0035
SER 710.0036
TYR 720.0016
SER 730.0017
PHE 740.0009
PHE 750.0012
SER 760.0029
PHE 770.0025
PRO 780.0034
GLU 790.0036
LEU 800.0027
GLN 810.0032
VAL 820.0025
LEU 830.0024
ASP 840.0023
LEU 850.0024
SER 860.0025
ARG 870.0036
CYS 880.0036
GLU 890.0031
ILE 900.0030
GLN 910.0028
THR 920.0027
ILE 930.0024
GLU 940.0034
ASP 950.0037
GLY 960.0030
ALA 970.0021
TYR 980.0012
GLN 990.0016
SER 1000.0009
LEU 1010.0010
SER 1020.0008
HIS 1030.0014
LEU 1040.0012
SER 1050.0021
THR 1060.0020
LEU 1070.0020
ILE 1080.0018
LEU 1090.0019
THR 1100.0018
GLY 1110.0019
ASN 1120.0019
PRO 1130.0017
ILE 1140.0020
GLN 1150.0026
SER 1160.0035
LEU 1170.0020
ALA 1180.0028
LEU 1190.0037
GLY 1200.0037
ALA 1210.0026
PHE 1220.0020
SER 1230.0023
GLY 1240.0019
LEU 1250.0016
SER 1260.0019
SER 1270.0014
LEU 1280.0016
GLN 1290.0018
LYS 1300.0019
LEU 1310.0021
VAL 1320.0023
ALA 1330.0025
VAL 1340.0027
GLU 1350.0026
THR 1360.0024
ASN 1370.0050
LEU 1380.0050
ALA 1390.0061
SER 1400.0060
LEU 1410.0054
GLU 1420.0067
ASN 1430.0064
PHE 1440.0054
PRO 1450.0051
ILE 1460.0046
GLY 1470.0052
HIS 1480.0046
LEU 1490.0033
LYS 1500.0035
THR 1510.0023
LEU 1520.0023
LYS 1530.0021
GLU 1540.0025
LEU 1550.0031
ASN 1560.0035
VAL 1570.0036
ALA 1580.0040
HIS 1590.0046
ASN 1600.0048
LEU 1610.0056
ILE 1620.0049
GLN 1630.0053
SER 1640.0046
PHE 1650.0036
LYS 1660.0042
LEU 1670.0051
PRO 1680.0060
GLU 1690.0062
TYR 1700.0059
PHE 1710.0048
SER 1720.0054
ASN 1730.0054
LEU 1740.0041
THR 1750.0039
ASN 1760.0028
LEU 1770.0014
GLU 1780.0011
HIS 1790.0017
LEU 1800.0023
ASP 1810.0030
LEU 1820.0021
SER 1830.0028
SER 1840.0037
ASN 1850.0038
LYS 1860.0045
ILE 1870.0033
GLN 1880.0035
SER 1890.0032
ILE 1900.0030
TYR 1910.0030
CYS 1920.0031
THR 1930.0039
ASP 1940.0039
LEU 1950.0032
ARG 1960.0042
VAL 1970.0047
LEU 1980.0037
HIS 1990.0043
GLN 2000.0054
MET 2010.0051
PRO 2020.0048
LEU 2030.0052
LEU 2040.0036
ASN 2050.0031
LEU 2060.0017
SER 2070.0020
LEU 2080.0019
ASP 2090.0021
LEU 2100.0021
SER 2110.0024
LEU 2120.0031
ASN 2130.0030
PRO 2140.0033
MET 2150.0033
ASN 2160.0036
PHE 2170.0042
ILE 2180.0038
GLN 2190.0038
PRO 2200.0038
GLY 2210.0036
ALA 2220.0031
PHE 2230.0032
LYS 2240.0034
GLU 2250.0035
ILE 2260.0031
ARG 2270.0030
LEU 2280.0029
HIS 2290.0030
LYS 2300.0030
LEU 2310.0030
THR 2320.0034
LEU 2330.0033
ARG 2340.0031
ASN 2350.0031
ASN 2360.0034
PHE 2370.0037
ASP 2380.0041
SER 2390.0036
LEU 2400.0029
ASN 2410.0033
VAL 2420.0040
MET 2430.0035
LYS 2440.0033
THR 2450.0040
CYS 2460.0042
ILE 2470.0040
GLN 2480.0042
GLY 2490.0046
LEU 2500.0041
ALA 2510.0041
GLY 2520.0042
LEU 2530.0038
GLU 2540.0034
VAL 2550.0031
HIS 2560.0026
ARG 2570.0023
LEU 2580.0023
VAL 2590.0024
LEU 2600.0024
GLY 2610.0024
GLU 2620.0034
PHE 2630.0045
ARG 2640.0052
ASN 2650.0063
GLU 2660.0059
GLY 2670.0062
ASN 2680.0051
LEU 2690.0044
GLU 2700.0050
LYS 2710.0040
PHE 2720.0037
ASP 2730.0031
LYS 2740.0021
SER 2750.0018
ALA 2760.0024
LEU 2770.0025
GLU 2780.0021
GLY 2790.0030
LEU 2800.0026
CYS 2810.0023
ASN 2820.0038
LEU 2830.0035
THR 2840.0029
ILE 2850.0023
GLU 2860.0018
GLU 2870.0012
PHE 2880.0014
ARG 2890.0017
LEU 2900.0019
ALA 2910.0022
TYR 2920.0032
LEU 2930.0038
ASP 2940.0050
TYR 2950.0052
TYR 2960.0053
LEU 2970.0054
ASP 2980.0060
GLY 2990.0053
ILE 3000.0043
ILE 3010.0047
ASP 3020.0029
LEU 3030.0029
PHE 3040.0021
ASN 3050.0018
CYS 3060.0013
LEU 3070.0015
THR 3080.0016
ASN 3090.0013
VAL 3100.0012
SER 3110.0014
SER 3120.0014
PHE 3130.0017
SER 3140.0017
LEU 3150.0020
VAL 3160.0021
SER 3170.0026
VAL 3180.0030
THR 3190.0036
ILE 3200.0039
GLU 3210.0049
ARG 3220.0049
VAL 3230.0039
LYS 3240.0050
ASP 3250.0048
PHE 3260.0036
SER 3270.0037
TYR 3280.0035
ASN 3290.0031
PHE 3300.0026
GLY 3310.0023
TRP 3320.0021
GLN 3330.0020
HIS 3340.0020
LEU 3350.0019
GLU 3360.0020
LEU 3370.0021
VAL 3380.0026
ASN 3390.0026
CYS 3400.0021
LYS 3410.0019
PHE 3420.0019
GLY 3430.0025
GLN 3440.0031
PHE 3450.0030
PRO 3460.0027
THR 3470.0027
LEU 3480.0024
LYS 3490.0027
LEU 3500.0025
LYS 3510.0026
SER 3520.0021
LEU 3530.0018
LYS 3540.0017
ARG 3550.0019
LEU 3560.0018
THR 3570.0026
PHE 3580.0027
THR 3590.0037
SER 3600.0043
ASN 3610.0035
LYS 3620.0039
GLY 3630.0034
GLY 3640.0035
ASN 3650.0037
ALA 3660.0041
PHE 3670.0035
SER 3680.0032
GLU 3690.0028
VAL 3700.0020
ASP 3710.0022
LEU 3720.0013
PRO 3730.0018
SER 3740.0018
LEU 3750.0013
GLU 3760.0013
PHE 3770.0018
LEU 3780.0018
ASP 3790.0029
LEU 3800.0033
SER 3810.0044
ARG 3820.0051
ASN 3830.0049
GLY 3840.0056
LEU 3850.0049
SER 3860.0054
PHE 3870.0056
LYS 3880.0065
GLY 3890.0061
CYS 3900.0043
CYS 3910.0031
SER 3920.0035
GLN 3930.0034
SER 3940.0039
ASP 3950.0032
PHE 3960.0019
GLY 3970.0021
THR 3980.0019
ILE 3990.0026
SER 4000.0023
LEU 4010.0012
LYS 4020.0017
TYR 4030.0016
LEU 4040.0014
ASP 4050.0028
LEU 4060.0036
SER 4070.0042
PHE 4080.0050
ASN 4090.0050
GLY 4100.0054
VAL 4110.0052
ILE 4120.0052
THR 4130.0058
MET 4140.0047
SER 4150.0057
SER 4160.0049
ASN 4170.0047
PHE 4180.0034
LEU 4190.0046
GLY 4200.0044
LEU 4210.0029
GLU 4220.0037
GLN 4230.0035
LEU 4240.0019
GLU 4250.0024
HIS 4260.0024
LEU 4270.0017
ASP 4280.0024
PHE 4290.0028
GLN 4300.0034
HIS 4310.0041
SER 4320.0042
ASN 4330.0048
LEU 4340.0041
LYS 4350.0046
GLN 4360.0045
MET 4370.0044
SER 4380.0049
GLU 4390.0059
PHE 4400.0051
SER 4410.0039
VAL 4420.0040
PHE 4430.0028
LEU 4440.0038
SER 4450.0040
LEU 4460.0027
ARG 4470.0034
ASN 4480.0032
LEU 4490.0018
ILE 4500.0025
TYR 4510.0026
LEU 4520.0021
ASP 4530.0024
ILE 4540.0026
SER 4550.0029
HIS 4560.0033
THR 4570.0035
HIS 4580.0035
THR 4590.0032
ARG 4600.0031
VAL 4610.0028
ALA 4620.0033
PHE 4630.0031
ASN 4640.0023
GLY 4650.0028
ILE 4660.0027
PHE 4670.0023
ASN 4680.0025
GLY 4690.0027
LEU 4700.0022
SER 4710.0024
SER 4720.0022
LEU 4730.0018
GLU 4740.0024
VAL 4750.0025
LEU 4760.0024
LYS 4770.0020
MET 4780.0021
ALA 4790.0025
GLY 4800.0028
ASN 4810.0026
SER 4820.0023
PHE 4830.0017
GLN 4840.0017
GLU 4850.0012
ASN 4860.0012
PHE 4870.0011
LEU 4880.0012
PRO 4890.0019
ASP 4900.0024
ILE 4910.0026
PHE 4920.0023
THR 4930.0026
GLU 4940.0028
LEU 4950.0027
ARG 4960.0029
ASN 4970.0028
LEU 4980.0025
THR 4990.0026
PHE 5000.0023
LEU 5010.0022
ASP 5020.0015
LEU 5030.0013
SER 5040.0013
GLN 5050.0013
CYS 5060.0012
GLN 5070.0010
LEU 5080.0009
GLU 5090.0013
GLN 5100.0015
LEU 5110.0015
SER 5120.0027
PRO 5130.0031
THR 5140.0034
ALA 5150.0028
PHE 5160.0026
ASN 5170.0033
SER 5180.0035
LEU 5190.0031
SER 5200.0033
SER 5210.0032
LEU 5220.0027
GLN 5230.0023
VAL 5240.0018
LEU 5250.0014
ASN 5260.0009
MET 5270.0004
SER 5280.0009
HIS 5290.0012
ASN 5300.0009
ASN 5310.0013
PHE 5320.0010
PHE 5330.0017
SER 5340.0016
LEU 5350.0012
ASP 5360.0012
THR 5370.0018
PHE 5380.0024
PRO 5390.0023
TYR 5400.0017
LYS 5410.0021
CYS 5420.0030
LEU 5430.0025
ASN 5440.0028
SER 5450.0026
LEU 5460.0020
GLN 5470.0016
VAL 5480.0013
LEU 5490.0009
ASP 5500.0010
TYR 5510.0010
SER 5520.0020
LEU 5530.0023
ASN 5540.0021
HIS 5550.0022
ILE 5560.0019
MET 5570.0024
THR 5580.0022
SER 5590.0017
LYS 5600.0020
LYS 5610.0019
GLN 5620.0026
GLU 5630.0025
LEU 5640.0021
GLN 5650.0023
HIS 5660.0021
PHE 5670.0017
PRO 5680.0018
SER 5690.0017
SER 5700.0017
LEU 5710.0014
ALA 5720.0015
PHE 5730.0015
LEU 5740.0015
ASN 5750.0017
LEU 5760.0018
THR 5770.0021
GLN 5780.0022
ASN 5790.0021
ASP 5800.0021
PHE 5810.0019
ALA 5820.0026
CYS 5830.0022
THR 5840.0039
CYS 5850.0045
GLU 5860.0053
HIS 5870.0027
GLN 5880.0018
SER 5890.0027
PHE 5900.0027
LEU 5910.0013
GLN 5920.0018
TRP 5930.0026
ILE 5940.0025
LYS 5950.0024
ASP 5960.0029
GLN 5970.0028
ARG 5980.0024
GLN 5990.0025
LEU 6000.0023
LEU 6010.0018
VAL 6020.0022
GLU 6030.0015
VAL 6040.0011
GLU 6050.0008
ARG 6060.0012
MET 6070.0013
GLU 6080.0003
CYS 6090.0009
ALA 6100.0015
THR 6110.0025
PRO 6120.0049
SER 6130.0055
ASP 6140.0063
LYS 6150.0043
GLN 6160.0032
GLY 6170.0021
MET 6180.0019
PRO 6190.0013
VAL 6200.0006
LEU 6210.0016
SER 6220.0027
LEU 6230.0016
ASN 6240.0028
ILE 6250.0017
THR 6260.0034
CYS 6270.0055
GLU 10.0031
ALA 20.0026
ALA 30.0017
ALA 40.0024
LYS 50.0027
MET 60.0016
GLN 70.0024
ARG 80.0025
LEU 90.0018
VAL 100.0024
LEU 110.0008
LEU 120.0011
LEU 130.0010
ALA 140.0018
ILE 150.0022
SER 160.0011
LEU 170.0019
LEU 180.0035
LEU 190.0027
TYR 200.0003
GLN 210.0026
ASP 220.0027
LEU 230.0017
PRO 240.0017
VAL 250.0021
ARG 260.0015
SER 270.0013
GLU 280.0014
PHE 290.0021
GLU 300.0020
LEU 310.0017
ASP 320.0018
ARG 330.0020
ILE 340.0021
CYS 350.0022
GLY 360.0031
TYR 370.0028
GLY 380.0023
THR 390.0019
ALA 400.0026
ARG 410.0012
CYS 420.0007
ARG 430.0012
LYS 440.0015
LYS 450.0018
CYS 460.0018
ARG 470.0022
SER 480.0026
GLN 490.0027
GLU 500.0023
TYR 510.0023
ARG 520.0013
ILE 530.0026
GLY 540.0025
ARG 550.0022
CYS 560.0016
PRO 570.0024
ASN 580.0026
THR 590.0032
TYR 600.0020
ALA 610.0008
CYS 620.0011
CYS 630.0016
LEU 640.0024
ARG 650.0030
LYS 660.0044
TRP 670.0054
ASP 680.0043
GLU 690.0029
SER 700.0035
LEU 710.0062
LEU 720.0058
ASN 730.0041
ARG 740.0052
THR 750.0080
LYS 760.0116
PRO 770.0210
GLU 780.0203
ALA 790.0329
ALA 800.0372
ALA 810.0173
LYS 820.0117
LYS 830.0144
GLU 840.0116
MET 850.0185
ASN 860.0155
LEU 870.0111
SER 880.0076
VAL 890.0092
GLY 900.0086
LEU 910.0142
GLY 920.0211
GLY 930.0339
GLY 940.0394
SER 950.0209
ASN 960.0102
LEU 970.0108
SER 980.0126
VAL 990.0117
GLY 1000.0154
LEU 1010.0142
GLY 1020.0085
GLU 1030.0026
ILE 1040.0092
GLY 1050.0115
GLY 1060.0152
GLY 1070.0159
SER 1080.0161
LYS 1090.0156
LEU 1100.0169
LEU 1110.0233
ASP 1120.0225
ILE 1130.0253
ASN 1140.0262
LEU 1150.0336
GLY 1160.0581
ARG 1170.0459
GLY 1180.0182
GLY 1190.0190
GLY 1200.0215
SER 1210.0328
MET 1220.0225
VAL 1230.0185
ASP 1240.0109
LEU 1250.0156
THR 1260.0203
PHE 1270.0204
GLY 1280.0216
GLY 1290.0203
VAL 1300.0218
GLY 1310.0469
GLY 1320.0261
GLY 1330.0122
SER 1340.0126
THR 1350.0105
PHE 1360.0123
THR 1370.0156
PHE 1380.0164
PHE 1390.0235
PRO 1400.0255
LEU 1410.0315
VAL 1420.0295
ILE 1430.0202
GLY 1440.0191
GLY 1450.0152
GLY 1460.0785
SER 1470.0733
ASP 1480.0712
ALA 1490.0369
MET 1500.0257
TYR 1510.0163
LEU 1520.0153
GLY 1530.0150
PHE 1540.0158
ALA 1550.0172
ALA 1560.0429
GLY 1570.0423
GLY 1580.0387
GLY 1590.0384
SER 1600.0424
ALA 1610.0232
GLY 1620.0249
GLY 1630.0222
GLU 1640.0249
ASN 1650.0221
HIS 1660.0214
VAL 1670.0211
ALA 1680.0179
PHE 1690.0179
GLY 1700.0162
PRO 1710.0553
GLY 1720.0449
PRO 1730.0357
GLY 1740.0145
VAL 1750.0234
ASP 1760.0250
LEU 1770.0249
THR 1780.0248
PHE 1790.0244
GLY 1800.0241
GLY 1810.0248
VAL 1820.0210
GLN 1830.0210
PHE 1840.0221
ALA 1850.0222
MET 1860.0198
VAL 1870.0305
ASN 1880.0098
ASN 1890.0328
GLY 1900.0384
PRO 1910.0344
GLY 1920.0435
PRO 1930.0343
GLY 1940.0220
GLU 1950.0276
SER 1960.0502
PHE 1970.0332
THR 1980.0205
ALA 1990.0090
GLN 2000.0168
PRO 2010.0225
ALA 2020.0103
ASP 2030.0222
MET 2040.0263
GLN 2050.0307
ALA 2060.0298
GLY 2070.0272
ILE 2080.0234
LYS 2090.0332
GLY 2100.0752
PRO 2110.0280
GLY 2120.0239
PRO 2130.0406
GLY 2140.0468
GLY 2150.0431
SER 2160.0402
ILE 2170.0322
GLN 2180.0408
VAL 2190.0454
ILE 2200.0493
ASN 2210.0419
GLY 2220.0420
SER 2230.0325
THR 2240.0210
ILE 2250.0234
GLY 2260.0393
THR 2270.0382
GLY 2280.0271
SER 2290.0218
LYS 2300.0164
LYS 2310.0195
THR 2320.0163
ILE 2330.0116
LEU 2340.0059
ILE 2350.0086
TYR 2360.0116
SER 2370.0136
ILE 2380.0145
ILE 2390.0162
GLY 2400.0172
VAL 2410.0094
LYS 2420.0052
LYS 2430.0032
GLY 2440.0049
THR 2450.0060
LEU 2460.0174
ALA 2470.0173
TRP 2480.0141
ALA 2490.0143
ARG 2500.0112
THR 2510.0090
GLY 2520.0041
PHE 2530.0074
SER 2540.0071
PRO 2550.0133
ALA 2560.0085
LYS 2570.0055
LYS 2580.0024
LEU 2590.0058
ASN 2600.0099
ALA 2610.0115
GLY 2620.0058
VAL 2630.0052
VAL 2640.0052
ARG 2650.0112
VAL 2660.0021
PHE 2670.0023
PHE 2680.0046
LEU 2690.0067
ASN 2700.0091
GLN 2710.0038
LYS 2720.0013
LYS 2730.0040
ALA 2740.0044
LYS 2750.0021
ASP 2760.0048
VAL 2770.0063
LEU 2780.0054
ARG 2790.0048
LYS 2800.0065
THR 2810.0076
SER 2820.0039
ARG 2830.0051
PRO 2840.0046
MET 2850.0087
VAL 2860.0079
ASP 2870.0055
LEU 2880.0073
THR 2890.0067
PHE 2900.0048
GLY 2910.0131
GLY 2920.0242

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.