CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
elNémo has been relocated.
**Some cleaning from time to time**
Sorry for the inconvenience.


***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 101  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.1618
GLU 270.0163
PRO 280.0172
CYS 290.0114
VAL 300.0106
GLU 310.0061
VAL 320.0075
VAL 330.0061
PRO 340.0035
ASN 350.0080
ILE 360.0080
THR 370.0036
TYR 380.0014
GLN 390.0043
CYS 400.0052
MET 410.0074
GLU 420.0091
LEU 430.0099
ASN 440.0096
PHE 450.0082
TYR 460.0092
LYS 470.0070
ILE 480.0054
PRO 490.0086
ASP 500.0135
ASN 510.0150
LEU 520.0093
PRO 530.0101
PHE 540.0125
SER 550.0113
THR 560.0068
LYS 570.0069
ASN 580.0051
LEU 590.0029
ASP 600.0023
LEU 610.0012
SER 620.0036
PHE 630.0032
ASN 640.0015
PRO 650.0010
LEU 660.0017
ARG 670.0043
HIS 680.0042
LEU 690.0040
GLY 700.0059
SER 710.0067
TYR 720.0034
SER 730.0044
PHE 740.0030
PHE 750.0035
SER 760.0077
PHE 770.0059
PRO 780.0069
GLU 790.0070
LEU 800.0050
GLN 810.0052
VAL 820.0024
LEU 830.0026
ASP 840.0025
LEU 850.0030
SER 860.0031
ARG 870.0062
CYS 880.0065
GLU 890.0056
ILE 900.0048
GLN 910.0038
THR 920.0043
ILE 930.0038
GLU 940.0060
ASP 950.0071
GLY 960.0065
ALA 970.0044
TYR 980.0023
GLN 990.0033
SER 1000.0013
LEU 1010.0016
SER 1020.0019
HIS 1030.0021
LEU 1040.0019
SER 1050.0029
THR 1060.0028
LEU 1070.0025
ILE 1080.0007
LEU 1090.0015
THR 1100.0024
GLY 1110.0041
ASN 1120.0032
PRO 1130.0029
ILE 1140.0019
GLN 1150.0023
SER 1160.0042
LEU 1170.0035
ALA 1180.0055
LEU 1190.0068
GLY 1200.0072
ALA 1210.0052
PHE 1220.0047
SER 1230.0057
GLY 1240.0055
LEU 1250.0049
SER 1260.0061
SER 1270.0054
LEU 1280.0049
GLN 1290.0050
LYS 1300.0047
LEU 1310.0041
VAL 1320.0037
ALA 1330.0029
VAL 1340.0043
GLU 1350.0044
THR 1360.0015
ASN 1370.0020
LEU 1380.0029
ALA 1390.0039
SER 1400.0051
LEU 1410.0056
GLU 1420.0062
ASN 1430.0051
PHE 1440.0053
PRO 1450.0059
ILE 1460.0066
GLY 1470.0068
HIS 1480.0068
LEU 1490.0063
LYS 1500.0072
THR 1510.0066
LEU 1520.0059
LYS 1530.0063
GLU 1540.0055
LEU 1550.0049
ASN 1560.0046
VAL 1570.0048
ALA 1580.0059
HIS 1590.0054
ASN 1600.0037
LEU 1610.0034
ILE 1620.0038
GLN 1630.0045
SER 1640.0046
PHE 1650.0040
LYS 1660.0048
LEU 1670.0064
PRO 1680.0064
GLU 1690.0065
TYR 1700.0064
PHE 1710.0065
SER 1720.0066
ASN 1730.0066
LEU 1740.0066
THR 1750.0067
ASN 1760.0068
LEU 1770.0054
GLU 1780.0058
HIS 1790.0046
LEU 1800.0039
ASP 1810.0034
LEU 1820.0020
SER 1830.0023
SER 1840.0022
ASN 1850.0022
LYS 1860.0029
ILE 1870.0026
GLN 1880.0032
SER 1890.0034
ILE 1900.0030
TYR 1910.0038
CYS 1920.0047
THR 1930.0054
ASP 1940.0051
LEU 1950.0047
ARG 1960.0055
VAL 1970.0062
LEU 1980.0061
HIS 1990.0065
GLN 2000.0068
MET 2010.0068
PRO 2020.0069
LEU 2030.0072
LEU 2040.0060
ASN 2050.0056
LEU 2060.0046
SER 2070.0033
LEU 2080.0024
ASP 2090.0019
LEU 2100.0010
SER 2110.0015
LEU 2120.0024
ASN 2130.0021
PRO 2140.0028
MET 2150.0031
ASN 2160.0039
PHE 2170.0043
ILE 2180.0041
GLN 2190.0043
PRO 2200.0042
GLY 2210.0042
ALA 2220.0044
PHE 2230.0045
LYS 2240.0045
GLU 2250.0048
ILE 2260.0049
ARG 2270.0044
LEU 2280.0044
HIS 2290.0045
LYS 2300.0044
LEU 2310.0042
THR 2320.0050
LEU 2330.0043
ARG 2340.0054
ASN 2350.0057
ASN 2360.0046
PHE 2370.0066
ASP 2380.0068
SER 2390.0064
LEU 2400.0059
ASN 2410.0060
VAL 2420.0061
MET 2430.0060
LYS 2440.0054
THR 2450.0056
CYS 2460.0061
ILE 2470.0058
GLN 2480.0055
GLY 2490.0058
LEU 2500.0060
ALA 2510.0057
GLY 2520.0064
LEU 2530.0059
GLU 2540.0055
VAL 2550.0050
HIS 2560.0046
ARG 2570.0042
LEU 2580.0040
VAL 2590.0044
LEU 2600.0043
GLY 2610.0047
GLU 2620.0078
PHE 2630.0095
ARG 2640.0105
ASN 2650.0120
GLU 2660.0113
GLY 2670.0106
ASN 2680.0095
LEU 2690.0093
GLU 2700.0096
LYS 2710.0088
PHE 2720.0077
ASP 2730.0074
LYS 2740.0064
SER 2750.0073
ALA 2760.0077
LEU 2770.0068
GLU 2780.0066
GLY 2790.0076
LEU 2800.0070
CYS 2810.0066
ASN 2820.0073
LEU 2830.0069
THR 2840.0064
ILE 2850.0053
GLU 2860.0047
GLU 2870.0032
PHE 2880.0033
ARG 2890.0039
LEU 2900.0042
ALA 2910.0048
TYR 2920.0066
LEU 2930.0070
ASP 2940.0074
TYR 2950.0081
TYR 2960.0068
LEU 2970.0073
ASP 2980.0084
GLY 2990.0071
ILE 3000.0060
ILE 3010.0072
ASP 3020.0060
LEU 3030.0063
PHE 3040.0054
ASN 3050.0054
CYS 3060.0065
LEU 3070.0047
THR 3080.0040
ASN 3090.0050
VAL 3100.0046
SER 3110.0047
SER 3120.0031
PHE 3130.0028
SER 3140.0030
LEU 3150.0028
VAL 3160.0033
SER 3170.0032
VAL 3180.0029
THR 3190.0029
ILE 3200.0041
GLU 3210.0061
ARG 3220.0068
VAL 3230.0048
LYS 3240.0066
ASP 3250.0061
PHE 3260.0034
SER 3270.0036
TYR 3280.0038
ASN 3290.0030
PHE 3300.0032
GLY 3310.0038
TRP 3320.0032
GLN 3330.0040
HIS 3340.0041
LEU 3350.0032
GLU 3360.0037
LEU 3370.0036
VAL 3380.0052
ASN 3390.0054
CYS 3400.0032
LYS 3410.0035
PHE 3420.0038
GLY 3430.0058
GLN 3440.0061
PHE 3450.0048
PRO 3460.0030
THR 3470.0038
LEU 3480.0026
LYS 3490.0025
LEU 3500.0026
LYS 3510.0034
SER 3520.0040
LEU 3530.0040
LYS 3540.0051
ARG 3550.0054
LEU 3560.0048
THR 3570.0061
PHE 3580.0057
THR 3590.0076
SER 3600.0087
ASN 3610.0071
LYS 3620.0081
GLY 3630.0072
GLY 3640.0070
ASN 3650.0063
ALA 3660.0062
PHE 3670.0041
SER 3680.0037
GLU 3690.0033
VAL 3700.0028
ASP 3710.0037
LEU 3720.0032
PRO 3730.0041
SER 3740.0047
LEU 3750.0045
GLU 3760.0055
PHE 3770.0072
LEU 3780.0056
ASP 3790.0065
LEU 3800.0057
SER 3810.0076
ARG 3820.0095
ASN 3830.0078
GLY 3840.0086
LEU 3850.0060
SER 3860.0066
PHE 3870.0053
LYS 3880.0085
GLY 3890.0095
CYS 3900.0063
CYS 3910.0061
SER 3920.0070
GLN 3930.0082
SER 3940.0080
ASP 3950.0051
PHE 3960.0048
GLY 3970.0058
THR 3980.0065
ILE 3990.0080
SER 4000.0084
LEU 4010.0072
LYS 4020.0091
TYR 4030.0076
LEU 4040.0047
ASP 4050.0052
LEU 4060.0041
SER 4070.0057
PHE 4080.0073
ASN 4090.0059
GLY 4100.0064
VAL 4110.0062
ILE 4120.0061
THR 4130.0087
MET 4140.0083
SER 4150.0109
SER 4160.0105
ASN 4170.0099
PHE 4180.0081
LEU 4190.0117
GLY 4200.0127
LEU 4210.0095
GLU 4220.0113
GLN 4230.0117
LEU 4240.0078
GLU 4250.0079
HIS 4260.0067
LEU 4270.0019
ASP 4280.0028
PHE 4290.0029
GLN 4300.0045
HIS 4310.0055
SER 4320.0052
ASN 4330.0068
LEU 4340.0064
LYS 4350.0086
GLN 4360.0106
MET 4370.0105
SER 4380.0132
GLU 4390.0147
PHE 4400.0132
SER 4410.0105
VAL 4420.0094
PHE 4430.0070
LEU 4440.0098
SER 4450.0101
LEU 4460.0069
ARG 4470.0084
ASN 4480.0075
LEU 4490.0039
ILE 4500.0040
TYR 4510.0047
LEU 4520.0032
ASP 4530.0035
ILE 4540.0036
SER 4550.0043
HIS 4560.0044
THR 4570.0052
HIS 4580.0067
THR 4590.0070
ARG 4600.0088
VAL 4610.0091
ALA 4620.0114
PHE 4630.0108
ASN 4640.0101
GLY 4650.0093
ILE 4660.0087
PHE 4670.0073
ASN 4680.0080
GLY 4690.0065
LEU 4700.0046
SER 4710.0043
SER 4720.0027
LEU 4730.0036
GLU 4740.0051
VAL 4750.0059
LEU 4760.0062
LYS 4770.0044
MET 4780.0046
ALA 4790.0051
GLY 4800.0051
ASN 4810.0050
SER 4820.0064
PHE 4830.0054
GLN 4840.0054
GLU 4850.0052
ASN 4860.0050
PHE 4870.0038
LEU 4880.0049
PRO 4890.0056
ASP 4900.0068
ILE 4910.0077
PHE 4920.0076
THR 4930.0084
GLU 4940.0078
LEU 4950.0076
ARG 4960.0087
ASN 4970.0083
LEU 4980.0077
THR 4990.0079
PHE 5000.0072
LEU 5010.0066
ASP 5020.0044
LEU 5030.0037
SER 5040.0033
GLN 5050.0022
CYS 5060.0021
GLN 5070.0034
LEU 5080.0027
GLU 5090.0025
GLN 5100.0022
LEU 5110.0024
SER 5120.0049
PRO 5130.0050
THR 5140.0064
ALA 5150.0061
PHE 5160.0065
ASN 5170.0081
SER 5180.0092
LEU 5190.0088
SER 5200.0094
SER 5210.0099
LEU 5220.0080
GLN 5230.0079
VAL 5240.0061
LEU 5250.0038
ASN 5260.0024
MET 5270.0015
SER 5280.0020
HIS 5290.0025
ASN 5300.0022
ASN 5310.0023
PHE 5320.0025
PHE 5330.0037
SER 5340.0037
LEU 5350.0031
ASP 5360.0022
THR 5370.0019
PHE 5380.0022
PRO 5390.0031
TYR 5400.0032
LYS 5410.0031
CYS 5420.0062
LEU 5430.0059
ASN 5440.0072
SER 5450.0077
LEU 5460.0062
GLN 5470.0055
VAL 5480.0041
LEU 5490.0027
ASP 5500.0029
TYR 5510.0037
SER 5520.0046
LEU 5530.0046
ASN 5540.0045
HIS 5550.0042
ILE 5560.0040
MET 5570.0050
THR 5580.0054
SER 5590.0051
LYS 5600.0055
LYS 5610.0051
GLN 5620.0069
GLU 5630.0051
LEU 5640.0052
GLN 5650.0059
HIS 5660.0037
PHE 5670.0029
PRO 5680.0037
SER 5690.0051
SER 5700.0059
LEU 5710.0050
ALA 5720.0053
PHE 5730.0043
LEU 5740.0039
ASN 5750.0044
LEU 5760.0053
THR 5770.0065
GLN 5780.0056
ASN 5790.0051
ASP 5800.0039
PHE 5810.0032
ALA 5820.0032
CYS 5830.0028
THR 5840.0024
CYS 5850.0030
GLU 5860.0046
HIS 5870.0048
GLN 5880.0048
SER 5890.0058
PHE 5900.0059
LEU 5910.0052
GLN 5920.0058
TRP 5930.0063
ILE 5940.0063
LYS 5950.0060
ASP 5960.0063
GLN 5970.0057
ARG 5980.0060
GLN 5990.0057
LEU 6000.0046
LEU 6010.0047
VAL 6020.0062
GLU 6030.0079
VAL 6040.0089
GLU 6050.0128
ARG 6060.0126
MET 6070.0062
GLU 6080.0039
CYS 6090.0013
ALA 6100.0034
THR 6110.0050
PRO 6120.0082
SER 6130.0118
ASP 6140.0126
LYS 6150.0082
GLN 6160.0062
GLY 6170.0013
MET 6180.0030
PRO 6190.0049
VAL 6200.0041
LEU 6210.0065
SER 6220.0073
LEU 6230.0047
ASN 6240.0045
ILE 6250.0031
THR 6260.0029
CYS 6270.0025
GLU 10.0040
ALA 20.0039
ALA 30.0040
ALA 40.0013
LYS 50.0009
MET 60.0028
GLN 70.0032
ARG 80.0033
LEU 90.0036
VAL 100.0046
LEU 110.0024
LEU 120.0036
LEU 130.0016
ALA 140.0008
ILE 150.0031
SER 160.0024
LEU 170.0037
LEU 180.0063
LEU 190.0057
TYR 200.0036
GLN 210.0049
ASP 220.0055
LEU 230.0035
PRO 240.0024
VAL 250.0022
ARG 260.0055
SER 270.0048
GLU 280.0086
PHE 290.0085
GLU 300.0055
LEU 310.0082
ASP 320.0100
ARG 330.0083
ILE 340.0078
CYS 350.0096
GLY 360.0084
TYR 370.0110
GLY 380.0095
THR 390.0054
ALA 400.0062
ARG 410.0084
CYS 420.0108
ARG 430.0145
LYS 440.0186
LYS 450.0189
CYS 460.0140
ARG 470.0126
SER 480.0113
GLN 490.0092
GLU 500.0102
TYR 510.0096
ARG 520.0097
ILE 530.0062
GLY 540.0072
ARG 550.0082
CYS 560.0071
PRO 570.0091
ASN 580.0143
THR 590.0114
TYR 600.0161
ALA 610.0127
CYS 620.0089
CYS 630.0089
LEU 640.0055
ARG 650.0060
LYS 660.0086
TRP 670.0065
ASP 680.0062
GLU 690.0022
SER 700.0051
LEU 710.0119
LEU 720.0102
ASN 730.0084
ARG 740.0127
THR 750.0174
LYS 760.0256
PRO 770.0467
GLU 780.0467
ALA 790.0695
ALA 800.0797
ALA 810.0272
LYS 820.0188
LYS 830.0159
GLU 840.0124
MET 850.0152
ASN 860.0119
LEU 870.0102
SER 880.0085
VAL 890.0081
GLY 900.0085
LEU 910.0125
GLY 920.0184
GLY 930.0201
GLY 940.0162
SER 950.0114
ASN 960.0065
LEU 970.0040
SER 980.0063
VAL 990.0118
GLY 1000.0167
LEU 1010.0280
GLY 1020.0347
GLU 1030.0372
ILE 1040.0329
GLY 1050.0344
GLY 1060.0693
GLY 1070.0538
SER 1080.0429
LYS 1090.0184
LEU 1100.0160
LEU 1110.0112
ASP 1120.0069
ILE 1130.0051
ASN 1140.0047
LEU 1150.0057
GLY 1160.0081
ARG 1170.0081
GLY 1180.0117
GLY 1190.0142
GLY 1200.0196
SER 1210.0117
MET 1220.0072
VAL 1230.0064
ASP 1240.0047
LEU 1250.0073
THR 1260.0089
PHE 1270.0057
GLY 1280.0056
GLY 1290.0045
VAL 1300.0032
GLY 1310.0071
GLY 1320.0032
GLY 1330.0033
SER 1340.0065
THR 1350.0082
PHE 1360.0093
THR 1370.0092
PHE 1380.0095
PHE 1390.0097
PRO 1400.0101
LEU 1410.0128
VAL 1420.0110
ILE 1430.0071
GLY 1440.0050
GLY 1450.0041
GLY 1460.0068
SER 1470.0064
ASP 1480.0097
ALA 1490.0079
MET 1500.0108
TYR 1510.0145
LEU 1520.0126
GLY 1530.0129
PHE 1540.0119
ALA 1550.0118
ALA 1560.0175
GLY 1570.0164
GLY 1580.0137
GLY 1590.0135
SER 1600.0133
ALA 1610.0010
GLY 1620.0042
GLY 1630.0074
GLU 1640.0086
ASN 1650.0105
HIS 1660.0110
VAL 1670.0119
ALA 1680.0120
PHE 1690.0132
GLY 1700.0144
PRO 1710.0078
GLY 1720.0106
PRO 1730.0161
GLY 1740.0084
VAL 1750.0125
ASP 1760.0136
LEU 1770.0121
THR 1780.0117
PHE 1790.0110
GLY 1800.0110
GLY 1810.0105
VAL 1820.0103
GLN 1830.0119
PHE 1840.0113
ALA 1850.0134
MET 1860.0197
VAL 1870.0225
ASN 1880.0151
ASN 1890.0107
GLY 1900.0281
PRO 1910.0156
GLY 1920.0125
PRO 1930.0153
GLY 1940.0175
GLU 1950.0183
SER 1960.0210
PHE 1970.0108
THR 1980.0044
ALA 1990.0097
GLN 2000.0168
PRO 2010.0074
ALA 2020.0049
ASP 2030.0139
MET 2040.0093
GLN 2050.0172
ALA 2060.0067
GLY 2070.0109
ILE 2080.0152
LYS 2090.0155
GLY 2100.0356
PRO 2110.0154
GLY 2120.0157
PRO 2130.0131
GLY 2140.0109
GLY 2150.0092
SER 2160.0320
ILE 2170.0247
GLN 2180.0194
VAL 2190.0110
ILE 2200.0125
ASN 2210.0260
GLY 2220.0212
SER 2230.0125
THR 2240.0067
ILE 2250.0151
GLY 2260.0245
THR 2270.0214
GLY 2280.0170
SER 2290.0246
LYS 2300.0177
LYS 2310.0139
THR 2320.0144
ILE 2330.0162
LEU 2340.0166
ILE 2350.0209
TYR 2360.0182
SER 2370.0177
ILE 2380.0179
ILE 2390.0170
GLY 2400.0173
VAL 2410.0116
LYS 2420.0065
LYS 2430.0046
GLY 2440.0073
THR 2450.0062
LEU 2460.0154
ALA 2470.0154
TRP 2480.0186
ALA 2490.0190
ARG 2500.0225
THR 2510.0332
GLY 2520.0314
PHE 2530.0139
SER 2540.0145
PRO 2550.0228
ALA 2560.0281
LYS 2570.0216
LYS 2580.0164
LEU 2590.0199
ASN 2600.0254
ALA 2610.0138
GLY 2620.0090
VAL 2630.0183
VAL 2640.0228
ARG 2650.0282
VAL 2660.0184
PHE 2670.0124
PHE 2680.0116
LEU 2690.0103
ASN 2700.0117
GLN 2710.0145
LYS 2720.0142
LYS 2730.0136
ALA 2740.0143
LYS 2750.0175
ASP 2760.0333
VAL 2770.0326
LEU 2780.0210
ARG 2790.0222
LYS 2800.0353
THR 2810.0449
SER 2820.0451
ARG 2830.0463
PRO 2840.0474
MET 2850.0506
VAL 2860.0465
ASP 2870.0326
LEU 2880.0366
THR 2890.0313
PHE 2900.0237
GLY 2910.0854
GLY 2920.1618

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.