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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 102  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0573
GLU 270.0056
PRO 280.0030
CYS 290.0033
VAL 300.0066
GLU 310.0094
VAL 320.0140
VAL 330.0154
PRO 340.0141
ASN 350.0111
ILE 360.0109
THR 370.0091
TYR 380.0058
GLN 390.0055
CYS 400.0038
MET 410.0068
GLU 420.0084
LEU 430.0084
ASN 440.0088
PHE 450.0070
TYR 460.0080
LYS 470.0060
ILE 480.0040
PRO 490.0027
ASP 500.0032
ASN 510.0029
LEU 520.0028
PRO 530.0040
PHE 540.0029
SER 550.0042
THR 560.0042
LYS 570.0054
ASN 580.0052
LEU 590.0042
ASP 600.0045
LEU 610.0045
SER 620.0041
PHE 630.0048
ASN 640.0048
PRO 650.0048
LEU 660.0041
ARG 670.0031
HIS 680.0033
LEU 690.0022
GLY 700.0033
SER 710.0031
TYR 720.0035
SER 730.0027
PHE 740.0028
PHE 750.0032
SER 760.0027
PHE 770.0026
PRO 780.0030
GLU 790.0030
LEU 800.0035
GLN 810.0042
VAL 820.0042
LEU 830.0034
ASP 840.0025
LEU 850.0017
SER 860.0017
ARG 870.0021
CYS 880.0014
GLU 890.0026
ILE 900.0028
GLN 910.0047
THR 920.0035
ILE 930.0016
GLU 940.0022
ASP 950.0016
GLY 960.0025
ALA 970.0020
TYR 980.0026
GLN 990.0034
SER 1000.0040
LEU 1010.0040
SER 1020.0039
HIS 1030.0043
LEU 1040.0039
SER 1050.0040
THR 1060.0037
LEU 1070.0021
ILE 1080.0027
LEU 1090.0025
THR 1100.0045
GLY 1110.0055
ASN 1120.0041
PRO 1130.0055
ILE 1140.0054
GLN 1150.0069
SER 1160.0063
LEU 1170.0038
ALA 1180.0027
LEU 1190.0026
GLY 1200.0014
ALA 1210.0021
PHE 1220.0026
SER 1230.0015
GLY 1240.0026
LEU 1250.0035
SER 1260.0038
SER 1270.0029
LEU 1280.0029
GLN 1290.0039
LYS 1300.0042
LEU 1310.0036
VAL 1320.0054
ALA 1330.0057
VAL 1340.0073
GLU 1350.0083
THR 1360.0073
ASN 1370.0086
LEU 1380.0076
ALA 1390.0067
SER 1400.0069
LEU 1410.0070
GLU 1420.0066
ASN 1430.0075
PHE 1440.0072
PRO 1450.0076
ILE 1460.0068
GLY 1470.0066
HIS 1480.0071
LEU 1490.0064
LYS 1500.0062
THR 1510.0058
LEU 1520.0042
LYS 1530.0044
GLU 1540.0046
LEU 1550.0047
ASN 1560.0050
VAL 1570.0065
ALA 1580.0069
HIS 1590.0079
ASN 1600.0075
LEU 1610.0072
ILE 1620.0053
GLN 1630.0059
SER 1640.0064
PHE 1650.0045
LYS 1660.0066
LEU 1670.0057
PRO 1680.0075
GLU 1690.0080
TYR 1700.0080
PHE 1710.0058
SER 1720.0058
ASN 1730.0068
LEU 1740.0058
THR 1750.0053
ASN 1760.0052
LEU 1770.0034
GLU 1780.0032
HIS 1790.0035
LEU 1800.0033
ASP 1810.0036
LEU 1820.0025
SER 1830.0036
SER 1840.0035
ASN 1850.0025
LYS 1860.0028
ILE 1870.0042
GLN 1880.0078
SER 1890.0097
ILE 1900.0092
TYR 1910.0114
CYS 1920.0126
THR 1930.0120
ASP 1940.0086
LEU 1950.0067
ARG 1960.0077
VAL 1970.0051
LEU 1980.0032
HIS 1990.0052
GLN 2000.0038
MET 2010.0007
PRO 2020.0024
LEU 2030.0028
LEU 2040.0019
ASN 2050.0033
LEU 2060.0020
SER 2070.0037
LEU 2080.0036
ASP 2090.0049
LEU 2100.0054
SER 2110.0071
LEU 2120.0072
ASN 2130.0065
PRO 2140.0076
MET 2150.0086
ASN 2160.0102
PHE 2170.0119
ILE 2180.0112
GLN 2190.0129
PRO 2200.0151
GLY 2210.0137
ALA 2220.0109
PHE 2230.0104
LYS 2240.0125
GLU 2250.0114
ILE 2260.0091
ARG 2270.0077
LEU 2280.0073
HIS 2290.0076
LYS 2300.0074
LEU 2310.0071
THR 2320.0093
LEU 2330.0098
ARG 2340.0105
ASN 2350.0112
ASN 2360.0109
PHE 2370.0120
ASP 2380.0119
SER 2390.0107
LEU 2400.0096
ASN 2410.0102
VAL 2420.0121
MET 2430.0120
LYS 2440.0116
THR 2450.0124
CYS 2460.0133
ILE 2470.0122
GLN 2480.0124
GLY 2490.0118
LEU 2500.0117
ALA 2510.0122
GLY 2520.0103
LEU 2530.0094
GLU 2540.0098
VAL 2550.0092
HIS 2560.0096
ARG 2570.0076
LEU 2580.0077
VAL 2590.0079
LEU 2600.0080
GLY 2610.0081
GLU 2620.0096
PHE 2630.0115
ARG 2640.0117
ASN 2650.0143
GLU 2660.0141
GLY 2670.0128
ASN 2680.0106
LEU 2690.0094
GLU 2700.0081
LYS 2710.0067
PHE 2720.0045
ASP 2730.0046
LYS 2740.0045
SER 2750.0066
ALA 2760.0067
LEU 2770.0066
GLU 2780.0073
GLY 2790.0091
LEU 2800.0085
CYS 2810.0082
ASN 2820.0099
LEU 2830.0092
THR 2840.0096
ILE 2850.0091
GLU 2860.0094
GLU 2870.0051
PHE 2880.0045
ARG 2890.0042
LEU 2900.0036
ALA 2910.0038
TYR 2920.0054
LEU 2930.0033
ASP 2940.0039
TYR 2950.0017
TYR 2960.0036
LEU 2970.0080
ASP 2980.0105
GLY 2990.0095
ILE 3000.0076
ILE 3010.0096
ASP 3020.0079
LEU 3030.0068
PHE 3040.0058
ASN 3050.0068
CYS 3060.0072
LEU 3070.0051
THR 3080.0060
ASN 3090.0060
VAL 3100.0044
SER 3110.0038
SER 3120.0018
PHE 3130.0015
SER 3140.0012
LEU 3150.0016
VAL 3160.0016
SER 3170.0038
VAL 3180.0042
THR 3190.0068
ILE 3200.0084
GLU 3210.0111
ARG 3220.0112
VAL 3230.0092
LYS 3240.0095
ASP 3250.0091
PHE 3260.0069
SER 3270.0072
TYR 3280.0076
ASN 3290.0063
PHE 3300.0058
GLY 3310.0050
TRP 3320.0018
GLN 3330.0007
HIS 3340.0010
LEU 3350.0021
GLU 3360.0024
LEU 3370.0032
VAL 3380.0037
ASN 3390.0051
CYS 3400.0055
LYS 3410.0073
PHE 3420.0094
GLY 3430.0104
GLN 3440.0092
PHE 3450.0078
PRO 3460.0069
THR 3470.0073
LEU 3480.0061
LYS 3490.0043
LEU 3500.0037
LYS 3510.0030
SER 3520.0014
LEU 3530.0024
LYS 3540.0028
ARG 3550.0036
LEU 3560.0046
THR 3570.0056
PHE 3580.0056
THR 3590.0066
SER 3600.0073
ASN 3610.0066
LYS 3620.0101
GLY 3630.0100
GLY 3640.0096
ASN 3650.0087
ALA 3660.0083
PHE 3670.0109
SER 3680.0095
GLU 3690.0085
VAL 3700.0079
ASP 3710.0069
LEU 3720.0058
PRO 3730.0055
SER 3740.0047
LEU 3750.0067
GLU 3760.0082
PHE 3770.0091
LEU 3780.0087
ASP 3790.0087
LEU 3800.0084
SER 3810.0086
ARG 3820.0084
ASN 3830.0088
GLY 3840.0091
LEU 3850.0093
SER 3860.0097
PHE 3870.0124
LYS 3880.0133
GLY 3890.0139
CYS 3900.0125
CYS 3910.0124
SER 3920.0121
GLN 3930.0125
SER 3940.0131
ASP 3950.0128
PHE 3960.0128
GLY 3970.0104
THR 3980.0107
ILE 3990.0115
SER 4000.0109
LEU 4010.0124
LYS 4020.0122
TYR 4030.0115
LEU 4040.0104
ASP 4050.0097
LEU 4060.0087
SER 4070.0065
PHE 4080.0066
ASN 4090.0075
GLY 4100.0073
VAL 4110.0072
ILE 4120.0094
THR 4130.0106
MET 4140.0107
SER 4150.0134
SER 4160.0135
ASN 4170.0115
PHE 4180.0113
LEU 4190.0141
GLY 4200.0152
LEU 4210.0126
GLU 4220.0117
GLN 4230.0118
LEU 4240.0100
GLU 4250.0083
HIS 4260.0089
LEU 4270.0058
ASP 4280.0053
PHE 4290.0040
GLN 4300.0038
HIS 4310.0034
SER 4320.0050
ASN 4330.0036
LEU 4340.0045
LYS 4350.0066
GLN 4360.0094
MET 4370.0065
SER 4380.0093
GLU 4390.0122
PHE 4400.0127
SER 4410.0109
VAL 4420.0082
PHE 4430.0061
LEU 4440.0101
SER 4450.0107
LEU 4460.0063
ARG 4470.0071
ASN 4480.0036
LEU 4490.0016
ILE 4500.0042
TYR 4510.0069
LEU 4520.0024
ASP 4530.0033
ILE 4540.0025
SER 4550.0043
HIS 4560.0040
THR 4570.0028
HIS 4580.0043
THR 4590.0044
ARG 4600.0065
VAL 4610.0074
ALA 4620.0085
PHE 4630.0099
ASN 4640.0118
GLY 4650.0110
ILE 4660.0076
PHE 4670.0073
ASN 4680.0097
GLY 4690.0083
LEU 4700.0063
SER 4710.0092
SER 4720.0086
LEU 4730.0086
GLU 4740.0113
VAL 4750.0112
LEU 4760.0097
LYS 4770.0073
MET 4780.0073
ALA 4790.0080
GLY 4800.0079
ASN 4810.0074
SER 4820.0094
PHE 4830.0096
GLN 4840.0107
GLU 4850.0110
ASN 4860.0098
PHE 4870.0080
LEU 4880.0091
PRO 4890.0095
ASP 4900.0106
ILE 4910.0118
PHE 4920.0113
THR 4930.0125
GLU 4940.0119
LEU 4950.0121
ARG 4960.0141
ASN 4970.0146
LEU 4980.0136
THR 4990.0144
PHE 5000.0133
LEU 5010.0118
ASP 5020.0092
LEU 5030.0085
SER 5040.0083
GLN 5050.0078
CYS 5060.0076
GLN 5070.0074
LEU 5080.0064
GLU 5090.0052
GLN 5100.0054
LEU 5110.0058
SER 5120.0080
PRO 5130.0073
THR 5140.0093
ALA 5150.0096
PHE 5160.0093
ASN 5170.0105
SER 5180.0128
LEU 5190.0124
SER 5200.0121
SER 5210.0133
LEU 5220.0113
GLN 5230.0112
VAL 5240.0101
LEU 5250.0083
ASN 5260.0076
MET 5270.0047
SER 5280.0047
HIS 5290.0053
ASN 5300.0043
ASN 5310.0031
PHE 5320.0029
PHE 5330.0050
SER 5340.0061
LEU 5350.0057
ASP 5360.0059
THR 5370.0042
PHE 5380.0066
PRO 5390.0058
TYR 5400.0034
LYS 5410.0055
CYS 5420.0073
LEU 5430.0063
ASN 5440.0068
SER 5450.0072
LEU 5460.0057
GLN 5470.0034
VAL 5480.0033
LEU 5490.0019
ASP 5500.0027
TYR 5510.0029
SER 5520.0045
LEU 5530.0054
ASN 5540.0047
HIS 5550.0058
ILE 5560.0064
MET 5570.0094
THR 5580.0099
SER 5590.0095
LYS 5600.0098
LYS 5610.0096
GLN 5620.0111
GLU 5630.0107
LEU 5640.0096
GLN 5650.0117
HIS 5660.0095
PHE 5670.0062
PRO 5680.0047
SER 5690.0048
SER 5700.0026
LEU 5710.0037
ALA 5720.0045
PHE 5730.0048
LEU 5740.0054
ASN 5750.0055
LEU 5760.0067
THR 5770.0067
GLN 5780.0073
ASN 5790.0077
ASP 5800.0087
PHE 5810.0089
ALA 5820.0074
CYS 5830.0037
THR 5840.0098
CYS 5850.0178
GLU 5860.0201
HIS 5870.0083
GLN 5880.0058
SER 5890.0069
PHE 5900.0084
LEU 5910.0055
GLN 5920.0051
TRP 5930.0091
ILE 5940.0112
LYS 5950.0105
ASP 5960.0107
GLN 5970.0113
ARG 5980.0113
GLN 5990.0123
LEU 6000.0106
LEU 6010.0093
VAL 6020.0091
GLU 6030.0090
VAL 6040.0098
GLU 6050.0095
ARG 6060.0084
MET 6070.0123
GLU 6080.0127
CYS 6090.0106
ALA 6100.0133
THR 6110.0112
PRO 6120.0120
SER 6130.0229
ASP 6140.0283
LYS 6150.0228
GLN 6160.0254
GLY 6170.0205
MET 6180.0173
PRO 6190.0153
VAL 6200.0107
LEU 6210.0092
SER 6220.0211
LEU 6230.0132
ASN 6240.0181
ILE 6250.0158
THR 6260.0251
CYS 6270.0337
GLU 10.0223
ALA 20.0199
ALA 30.0163
ALA 40.0064
LYS 50.0128
MET 60.0125
GLN 70.0171
ARG 80.0183
LEU 90.0145
VAL 100.0183
LEU 110.0064
LEU 120.0140
LEU 130.0046
ALA 140.0101
ILE 150.0185
SER 160.0152
LEU 170.0156
LEU 180.0302
LEU 190.0270
TYR 200.0128
GLN 210.0194
ASP 220.0205
LEU 230.0084
PRO 240.0068
VAL 250.0141
ARG 260.0186
SER 270.0114
GLU 280.0160
PHE 290.0130
GLU 300.0049
LEU 310.0074
ASP 320.0074
ARG 330.0062
ILE 340.0067
CYS 350.0080
GLY 360.0060
TYR 370.0062
GLY 380.0058
THR 390.0096
ALA 400.0099
ARG 410.0063
CYS 420.0074
ARG 430.0077
LYS 440.0087
LYS 450.0085
CYS 460.0064
ARG 470.0051
SER 480.0051
GLN 490.0058
GLU 500.0071
TYR 510.0115
ARG 520.0124
ILE 530.0136
GLY 540.0142
ARG 550.0139
CYS 560.0124
PRO 570.0123
ASN 580.0124
THR 590.0123
TYR 600.0125
ALA 610.0096
CYS 620.0102
CYS 630.0087
LEU 640.0092
ARG 650.0076
LYS 660.0138
TRP 670.0139
ASP 680.0103
GLU 690.0081
SER 700.0073
LEU 710.0105
LEU 720.0099
ASN 730.0069
ARG 740.0102
THR 750.0124
LYS 760.0111
PRO 770.0162
GLU 780.0178
ALA 790.0231
ALA 800.0257
ALA 810.0153
LYS 820.0115
LYS 830.0159
GLU 840.0130
MET 850.0170
ASN 860.0200
LEU 870.0161
SER 880.0168
VAL 890.0158
GLY 900.0180
LEU 910.0240
GLY 920.0325
GLY 930.0293
GLY 940.0289
SER 950.0188
ASN 960.0211
LEU 970.0142
SER 980.0182
VAL 990.0135
GLY 1000.0184
LEU 1010.0054
GLY 1020.0134
GLU 1030.0238
ILE 1040.0283
GLY 1050.0370
GLY 1060.0476
GLY 1070.0355
SER 1080.0277
LYS 1090.0119
LEU 1100.0091
LEU 1110.0217
ASP 1120.0211
ILE 1130.0204
ASN 1140.0203
LEU 1150.0208
GLY 1160.0319
ARG 1170.0294
GLY 1180.0136
GLY 1190.0127
GLY 1200.0237
SER 1210.0258
MET 1220.0177
VAL 1230.0155
ASP 1240.0076
LEU 1250.0087
THR 1260.0130
PHE 1270.0119
GLY 1280.0127
GLY 1290.0123
VAL 1300.0114
GLY 1310.0400
GLY 1320.0284
GLY 1330.0168
SER 1340.0069
THR 1350.0094
PHE 1360.0051
THR 1370.0046
PHE 1380.0063
PHE 1390.0086
PRO 1400.0110
LEU 1410.0103
VAL 1420.0076
ILE 1430.0029
GLY 1440.0093
GLY 1450.0188
GLY 1460.0341
SER 1470.0277
ASP 1480.0187
ALA 1490.0190
MET 1500.0138
TYR 1510.0156
LEU 1520.0125
GLY 1530.0104
PHE 1540.0076
ALA 1550.0073
ALA 1560.0142
GLY 1570.0199
GLY 1580.0153
GLY 1590.0149
SER 1600.0245
ALA 1610.0223
GLY 1620.0184
GLY 1630.0136
GLU 1640.0127
ASN 1650.0124
HIS 1660.0061
VAL 1670.0059
ALA 1680.0031
PHE 1690.0050
GLY 1700.0044
PRO 1710.0144
GLY 1720.0088
PRO 1730.0077
GLY 1740.0028
VAL 1750.0017
ASP 1760.0016
LEU 1770.0035
THR 1780.0053
PHE 1790.0072
GLY 1800.0092
GLY 1810.0118
VAL 1820.0100
GLN 1830.0073
PHE 1840.0046
ALA 1850.0044
MET 1860.0094
VAL 1870.0182
ASN 1880.0202
ASN 1890.0212
GLY 1900.0263
PRO 1910.0344
GLY 1920.0138
PRO 1930.0106
GLY 1940.0168
GLU 1950.0067
SER 1960.0345
PHE 1970.0214
THR 1980.0190
ALA 1990.0232
GLN 2000.0094
PRO 2010.0323
ALA 2020.0125
ASP 2030.0235
MET 2040.0406
GLN 2050.0436
ALA 2060.0573
GLY 2070.0468
ILE 2080.0224
LYS 2090.0272
GLY 2100.0559
PRO 2110.0241
GLY 2120.0228
PRO 2130.0184
GLY 2140.0242
GLY 2150.0244
SER 2160.0443
ILE 2170.0311
GLN 2180.0258
VAL 2190.0138
ILE 2200.0094
ASN 2210.0243
GLY 2220.0127
SER 2230.0174
THR 2240.0204
ILE 2250.0099
GLY 2260.0262
THR 2270.0223
GLY 2280.0098
SER 2290.0129
LYS 2300.0144
LYS 2310.0047
THR 2320.0060
ILE 2330.0040
LEU 2340.0056
ILE 2350.0034
TYR 2360.0096
SER 2370.0089
ILE 2380.0083
ILE 2390.0101
GLY 2400.0114
VAL 2410.0092
LYS 2420.0061
LYS 2430.0067
GLY 2440.0036
THR 2450.0015
LEU 2460.0116
ALA 2470.0109
TRP 2480.0098
ALA 2490.0100
ARG 2500.0099
THR 2510.0128
GLY 2520.0131
PHE 2530.0086
SER 2540.0072
PRO 2550.0130
ALA 2560.0387
LYS 2570.0254
LYS 2580.0201
LEU 2590.0091
ASN 2600.0216
ALA 2610.0130
GLY 2620.0151
VAL 2630.0142
VAL 2640.0156
ARG 2650.0207
VAL 2660.0113
PHE 2670.0097
PHE 2680.0089
LEU 2690.0083
ASN 2700.0068
GLN 2710.0015
LYS 2720.0036
LYS 2730.0045
ALA 2740.0037
LYS 2750.0039
ASP 2760.0070
VAL 2770.0076
LEU 2780.0063
ARG 2790.0060
LYS 2800.0075
THR 2810.0134
SER 2820.0132
ARG 2830.0111
PRO 2840.0109
MET 2850.0111
VAL 2860.0150
ASP 2870.0098
LEU 2880.0071
THR 2890.0043
PHE 2900.0058
GLY 2910.0255
GLY 2920.0441

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.