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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 103  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0902
GLU 270.0037
PRO 280.0040
CYS 290.0028
VAL 300.0040
GLU 310.0044
VAL 320.0074
VAL 330.0086
PRO 340.0076
ASN 350.0076
ILE 360.0078
THR 370.0056
TYR 380.0034
GLN 390.0036
CYS 400.0026
MET 410.0048
GLU 420.0056
LEU 430.0058
ASN 440.0056
PHE 450.0045
TYR 460.0051
LYS 470.0030
ILE 480.0021
PRO 490.0025
ASP 500.0045
ASN 510.0041
LEU 520.0033
PRO 530.0046
PHE 540.0051
SER 550.0057
THR 560.0046
LYS 570.0042
ASN 580.0034
LEU 590.0021
ASP 600.0020
LEU 610.0015
SER 620.0022
PHE 630.0019
ASN 640.0019
PRO 650.0019
LEU 660.0025
ARG 670.0047
HIS 680.0047
LEU 690.0039
GLY 700.0045
SER 710.0042
TYR 720.0029
SER 730.0023
PHE 740.0021
PHE 750.0022
SER 760.0025
PHE 770.0022
PRO 780.0021
GLU 790.0024
LEU 800.0024
GLN 810.0026
VAL 820.0012
LEU 830.0009
ASP 840.0006
LEU 850.0008
SER 860.0016
ARG 870.0036
CYS 880.0011
GLU 890.0035
ILE 900.0034
GLN 910.0059
THR 920.0053
ILE 930.0041
GLU 940.0046
ASP 950.0042
GLY 960.0041
ALA 970.0028
TYR 980.0020
GLN 990.0028
SER 1000.0024
LEU 1010.0019
SER 1020.0017
HIS 1030.0017
LEU 1040.0012
SER 1050.0015
THR 1060.0014
LEU 1070.0011
ILE 1080.0021
LEU 1090.0025
THR 1100.0036
GLY 1110.0045
ASN 1120.0044
PRO 1130.0062
ILE 1140.0056
GLN 1150.0074
SER 1160.0069
LEU 1170.0040
ALA 1180.0039
LEU 1190.0029
GLY 1200.0032
ALA 1210.0026
PHE 1220.0014
SER 1230.0019
GLY 1240.0019
LEU 1250.0012
SER 1260.0023
SER 1270.0017
LEU 1280.0013
GLN 1290.0019
LYS 1300.0020
LEU 1310.0017
VAL 1320.0034
ALA 1330.0038
VAL 1340.0049
GLU 1350.0057
THR 1360.0051
ASN 1370.0060
LEU 1380.0047
ALA 1390.0040
SER 1400.0039
LEU 1410.0041
GLU 1420.0033
ASN 1430.0033
PHE 1440.0032
PRO 1450.0035
ILE 1460.0032
GLY 1470.0040
HIS 1480.0040
LEU 1490.0029
LYS 1500.0035
THR 1510.0026
LEU 1520.0017
LYS 1530.0023
GLU 1540.0026
LEU 1550.0024
ASN 1560.0029
VAL 1570.0042
ALA 1580.0043
HIS 1590.0045
ASN 1600.0043
LEU 1610.0041
ILE 1620.0038
GLN 1630.0044
SER 1640.0052
PHE 1650.0046
LYS 1660.0058
LEU 1670.0055
PRO 1680.0059
GLU 1690.0065
TYR 1700.0058
PHE 1710.0052
SER 1720.0056
ASN 1730.0053
LEU 1740.0041
THR 1750.0039
ASN 1760.0030
LEU 1770.0019
GLU 1780.0025
HIS 1790.0026
LEU 1800.0022
ASP 1810.0026
LEU 1820.0025
SER 1830.0027
SER 1840.0027
ASN 1850.0024
LYS 1860.0028
ILE 1870.0037
GLN 1880.0057
SER 1890.0069
ILE 1900.0066
TYR 1910.0083
CYS 1920.0088
THR 1930.0089
ASP 1940.0074
LEU 1950.0062
ARG 1960.0069
VAL 1970.0060
LEU 1980.0049
HIS 1990.0055
GLN 2000.0054
MET 2010.0041
PRO 2020.0028
LEU 2030.0021
LEU 2040.0021
ASN 2050.0021
LEU 2060.0023
SER 2070.0026
LEU 2080.0025
ASP 2090.0028
LEU 2100.0030
SER 2110.0036
LEU 2120.0038
ASN 2130.0034
PRO 2140.0045
MET 2150.0050
ASN 2160.0063
PHE 2170.0078
ILE 2180.0070
GLN 2190.0082
PRO 2200.0092
GLY 2210.0081
ALA 2220.0068
PHE 2230.0059
LYS 2240.0067
GLU 2250.0055
ILE 2260.0043
ARG 2270.0039
LEU 2280.0037
HIS 2290.0039
LYS 2300.0040
LEU 2310.0041
THR 2320.0044
LEU 2330.0046
ARG 2340.0050
ASN 2350.0052
ASN 2360.0048
PHE 2370.0053
ASP 2380.0049
SER 2390.0046
LEU 2400.0046
ASN 2410.0049
VAL 2420.0063
MET 2430.0065
LYS 2440.0066
THR 2450.0069
CYS 2460.0071
ILE 2470.0072
GLN 2480.0076
GLY 2490.0069
LEU 2500.0066
ALA 2510.0071
GLY 2520.0058
LEU 2530.0054
GLU 2540.0054
VAL 2550.0054
HIS 2560.0055
ARG 2570.0043
LEU 2580.0043
VAL 2590.0044
LEU 2600.0044
GLY 2610.0045
GLU 2620.0047
PHE 2630.0048
ARG 2640.0043
ASN 2650.0051
GLU 2660.0054
GLY 2670.0046
ASN 2680.0041
LEU 2690.0040
GLU 2700.0035
LYS 2710.0034
PHE 2720.0035
ASP 2730.0037
LYS 2740.0036
SER 2750.0047
ALA 2760.0047
LEU 2770.0051
GLU 2780.0056
GLY 2790.0064
LEU 2800.0061
CYS 2810.0063
ASN 2820.0068
LEU 2830.0062
THR 2840.0063
ILE 2850.0060
GLU 2860.0061
GLU 2870.0038
PHE 2880.0035
ARG 2890.0032
LEU 2900.0031
ALA 2910.0030
TYR 2920.0024
LEU 2930.0025
ASP 2940.0023
TYR 2950.0032
TYR 2960.0033
LEU 2970.0061
ASP 2980.0072
GLY 2990.0059
ILE 3000.0048
ILE 3010.0056
ASP 3020.0050
LEU 3030.0051
PHE 3040.0046
ASN 3050.0049
CYS 3060.0058
LEU 3070.0046
THR 3080.0045
ASN 3090.0047
VAL 3100.0043
SER 3110.0040
SER 3120.0026
PHE 3130.0021
SER 3140.0020
LEU 3150.0023
VAL 3160.0025
SER 3170.0022
VAL 3180.0037
THR 3190.0049
ILE 3200.0059
GLU 3210.0072
ARG 3220.0075
VAL 3230.0060
LYS 3240.0057
ASP 3250.0053
PHE 3260.0038
SER 3270.0029
TYR 3280.0030
ASN 3290.0021
PHE 3300.0028
GLY 3310.0032
TRP 3320.0014
GLN 3330.0017
HIS 3340.0010
LEU 3350.0008
GLU 3360.0016
LEU 3370.0026
VAL 3380.0026
ASN 3390.0038
CYS 3400.0047
LYS 3410.0061
PHE 3420.0074
GLY 3430.0083
GLN 3440.0078
PHE 3450.0068
PRO 3460.0061
THR 3470.0053
LEU 3480.0036
LYS 3490.0018
LEU 3500.0003
LYS 3510.0019
SER 3520.0029
LEU 3530.0019
LYS 3540.0023
ARG 3550.0017
LEU 3560.0031
THR 3570.0038
PHE 3580.0043
THR 3590.0045
SER 3600.0050
ASN 3610.0053
LYS 3620.0073
GLY 3630.0082
GLY 3640.0087
ASN 3650.0079
ALA 3660.0085
PHE 3670.0085
SER 3680.0073
GLU 3690.0060
VAL 3700.0049
ASP 3710.0035
LEU 3720.0036
PRO 3730.0051
SER 3740.0033
LEU 3750.0038
GLU 3760.0052
PHE 3770.0061
LEU 3780.0058
ASP 3790.0057
LEU 3800.0055
SER 3810.0056
ARG 3820.0052
ASN 3830.0056
GLY 3840.0056
LEU 3850.0062
SER 3860.0070
PHE 3870.0075
LYS 3880.0097
GLY 3890.0104
CYS 3900.0079
CYS 3910.0074
SER 3920.0069
GLN 3930.0076
SER 3940.0078
ASP 3950.0071
PHE 3960.0075
GLY 3970.0062
THR 3980.0073
ILE 3990.0100
SER 4000.0089
LEU 4010.0096
LYS 4020.0091
TYR 4030.0081
LEU 4040.0065
ASP 4050.0058
LEU 4060.0045
SER 4070.0032
PHE 4080.0032
ASN 4090.0035
GLY 4100.0045
VAL 4110.0062
ILE 4120.0065
THR 4130.0087
MET 4140.0083
SER 4150.0104
SER 4160.0096
ASN 4170.0072
PHE 4180.0067
LEU 4190.0094
GLY 4200.0107
LEU 4210.0085
GLU 4220.0088
GLN 4230.0095
LEU 4240.0075
GLU 4250.0070
HIS 4260.0066
LEU 4270.0025
ASP 4280.0018
PHE 4290.0014
GLN 4300.0027
HIS 4310.0034
SER 4320.0026
ASN 4330.0049
LEU 4340.0061
LYS 4350.0086
GLN 4360.0106
MET 4370.0084
SER 4380.0108
GLU 4390.0123
PHE 4400.0114
SER 4410.0094
VAL 4420.0071
PHE 4430.0052
LEU 4440.0078
SER 4450.0080
LEU 4460.0050
ARG 4470.0056
ASN 4480.0044
LEU 4490.0025
ILE 4500.0029
TYR 4510.0043
LEU 4520.0019
ASP 4530.0025
ILE 4540.0035
SER 4550.0045
HIS 4560.0052
THR 4570.0055
HIS 4580.0070
THR 4590.0070
ARG 4600.0083
VAL 4610.0080
ALA 4620.0095
PHE 4630.0097
ASN 4640.0098
GLY 4650.0091
ILE 4660.0078
PHE 4670.0063
ASN 4680.0075
GLY 4690.0062
LEU 4700.0044
SER 4710.0051
SER 4720.0043
LEU 4730.0047
GLU 4740.0063
VAL 4750.0065
LEU 4760.0060
LYS 4770.0049
MET 4780.0053
ALA 4790.0055
GLY 4800.0059
ASN 4810.0061
SER 4820.0070
PHE 4830.0062
GLN 4840.0063
GLU 4850.0058
ASN 4860.0055
PHE 4870.0030
LEU 4880.0045
PRO 4890.0047
ASP 4900.0060
ILE 4910.0072
PHE 4920.0067
THR 4930.0075
GLU 4940.0071
LEU 4950.0072
ARG 4960.0084
ASN 4970.0088
LEU 4980.0081
THR 4990.0087
PHE 5000.0079
LEU 5010.0069
ASP 5020.0056
LEU 5030.0049
SER 5040.0049
GLN 5050.0047
CYS 5060.0044
GLN 5070.0046
LEU 5080.0032
GLU 5090.0022
GLN 5100.0010
LEU 5110.0013
SER 5120.0030
PRO 5130.0033
THR 5140.0049
ALA 5150.0046
PHE 5160.0050
ASN 5170.0065
SER 5180.0080
LEU 5190.0076
SER 5200.0081
SER 5210.0088
LEU 5220.0073
GLN 5230.0074
VAL 5240.0064
LEU 5250.0049
ASN 5260.0044
MET 5270.0032
SER 5280.0037
HIS 5290.0041
ASN 5300.0032
ASN 5310.0028
PHE 5320.0035
PHE 5330.0051
SER 5340.0052
LEU 5350.0045
ASP 5360.0043
THR 5370.0030
PHE 5380.0041
PRO 5390.0032
TYR 5400.0018
LYS 5410.0030
CYS 5420.0052
LEU 5430.0045
ASN 5440.0056
SER 5450.0059
LEU 5460.0043
GLN 5470.0034
VAL 5480.0031
LEU 5490.0022
ASP 5500.0030
TYR 5510.0035
SER 5520.0047
LEU 5530.0052
ASN 5540.0050
HIS 5550.0054
ILE 5560.0053
MET 5570.0072
THR 5580.0074
SER 5590.0068
LYS 5600.0073
LYS 5610.0068
GLN 5620.0080
GLU 5630.0072
LEU 5640.0065
GLN 5650.0070
HIS 5660.0056
PHE 5670.0035
PRO 5680.0023
SER 5690.0015
SER 5700.0016
LEU 5710.0021
ALA 5720.0025
PHE 5730.0031
LEU 5740.0039
ASN 5750.0045
LEU 5760.0055
THR 5770.0057
GLN 5780.0060
ASN 5790.0060
ASP 5800.0063
PHE 5810.0062
ALA 5820.0039
CYS 5830.0035
THR 5840.0048
CYS 5850.0087
GLU 5860.0097
HIS 5870.0034
GLN 5880.0010
SER 5890.0037
PHE 5900.0058
LEU 5910.0043
GLN 5920.0043
TRP 5930.0066
ILE 5940.0083
LYS 5950.0078
ASP 5960.0077
GLN 5970.0077
ARG 5980.0073
GLN 5990.0077
LEU 6000.0071
LEU 6010.0063
VAL 6020.0077
GLU 6030.0072
VAL 6040.0072
GLU 6050.0067
ARG 6060.0062
MET 6070.0096
GLU 6080.0094
CYS 6090.0075
ALA 6100.0081
THR 6110.0060
PRO 6120.0076
SER 6130.0131
ASP 6140.0174
LYS 6150.0141
GLN 6160.0150
GLY 6170.0138
MET 6180.0125
PRO 6190.0117
VAL 6200.0086
LEU 6210.0087
SER 6220.0152
LEU 6230.0103
ASN 6240.0119
ILE 6250.0092
THR 6260.0138
CYS 6270.0175
GLU 10.0370
ALA 20.0363
ALA 30.0266
ALA 40.0134
LYS 50.0258
MET 60.0199
GLN 70.0292
ARG 80.0311
LEU 90.0213
VAL 100.0267
LEU 110.0066
LEU 120.0208
LEU 130.0063
ALA 140.0205
ILE 150.0336
SER 160.0261
LEU 170.0241
LEU 180.0510
LEU 190.0456
TYR 200.0176
GLN 210.0322
ASP 220.0349
LEU 230.0140
PRO 240.0148
VAL 250.0252
ARG 260.0168
SER 270.0107
GLU 280.0136
PHE 290.0116
GLU 300.0060
LEU 310.0055
ASP 320.0064
ARG 330.0063
ILE 340.0055
CYS 350.0057
GLY 360.0030
TYR 370.0031
GLY 380.0038
THR 390.0068
ALA 400.0065
ARG 410.0047
CYS 420.0041
ARG 430.0025
LYS 440.0018
LYS 450.0034
CYS 460.0038
ARG 470.0031
SER 480.0040
GLN 490.0034
GLU 500.0041
TYR 510.0077
ARG 520.0077
ILE 530.0090
GLY 540.0088
ARG 550.0077
CYS 560.0072
PRO 570.0072
ASN 580.0061
THR 590.0059
TYR 600.0059
ALA 610.0049
CYS 620.0055
CYS 630.0044
LEU 640.0051
ARG 650.0038
LYS 660.0061
TRP 670.0062
ASP 680.0044
GLU 690.0034
SER 700.0037
LEU 710.0052
LEU 720.0060
ASN 730.0056
ARG 740.0061
THR 750.0074
LYS 760.0135
PRO 770.0186
GLU 780.0160
ALA 790.0245
ALA 800.0295
ALA 810.0260
LYS 820.0194
LYS 830.0124
GLU 840.0052
MET 850.0099
ASN 860.0117
LEU 870.0110
SER 880.0104
VAL 890.0109
GLY 900.0112
LEU 910.0149
GLY 920.0192
GLY 930.0195
GLY 940.0196
SER 950.0135
ASN 960.0121
LEU 970.0111
SER 980.0121
VAL 990.0115
GLY 1000.0126
LEU 1010.0123
GLY 1020.0106
GLU 1030.0094
ILE 1040.0096
GLY 1050.0110
GLY 1060.0082
GLY 1070.0087
SER 1080.0093
LYS 1090.0037
LEU 1100.0055
LEU 1110.0066
ASP 1120.0071
ILE 1130.0086
ASN 1140.0087
LEU 1150.0116
GLY 1160.0207
ARG 1170.0162
GLY 1180.0048
GLY 1190.0050
GLY 1200.0147
SER 1210.0179
MET 1220.0118
VAL 1230.0119
ASP 1240.0074
LEU 1250.0116
THR 1260.0162
PHE 1270.0141
GLY 1280.0136
GLY 1290.0139
VAL 1300.0119
GLY 1310.0250
GLY 1320.0187
GLY 1330.0128
SER 1340.0040
THR 1350.0061
PHE 1360.0063
THR 1370.0046
PHE 1380.0052
PHE 1390.0087
PRO 1400.0108
LEU 1410.0102
VAL 1420.0089
ILE 1430.0168
GLY 1440.0203
GLY 1450.0273
GLY 1460.0211
SER 1470.0211
ASP 1480.0229
ALA 1490.0120
MET 1500.0114
TYR 1510.0052
LEU 1520.0053
GLY 1530.0055
PHE 1540.0055
ALA 1550.0063
ALA 1560.0091
GLY 1570.0103
GLY 1580.0062
GLY 1590.0067
SER 1600.0179
ALA 1610.0117
GLY 1620.0121
GLY 1630.0138
GLU 1640.0143
ASN 1650.0154
HIS 1660.0099
VAL 1670.0097
ALA 1680.0081
PHE 1690.0089
GLY 1700.0076
PRO 1710.0124
GLY 1720.0128
PRO 1730.0201
GLY 1740.0126
VAL 1750.0067
ASP 1760.0035
LEU 1770.0055
THR 1780.0067
PHE 1790.0108
GLY 1800.0136
GLY 1810.0198
VAL 1820.0156
GLN 1830.0089
PHE 1840.0028
ALA 1850.0081
MET 1860.0200
VAL 1870.0199
ASN 1880.0188
ASN 1890.0319
GLY 1900.0352
PRO 1910.0578
GLY 1920.0322
PRO 1930.0144
GLY 1940.0302
GLU 1950.0044
SER 1960.0445
PHE 1970.0289
THR 1980.0232
ALA 1990.0307
GLN 2000.0123
PRO 2010.0478
ALA 2020.0183
ASP 2030.0376
MET 2040.0619
GLN 2050.0648
ALA 2060.0844
GLY 2070.0710
ILE 2080.0350
LYS 2090.0436
GLY 2100.0902
PRO 2110.0364
GLY 2120.0345
PRO 2130.0309
GLY 2140.0361
GLY 2150.0366
SER 2160.0733
ILE 2170.0512
GLN 2180.0355
VAL 2190.0139
ILE 2200.0142
ASN 2210.0485
GLY 2220.0310
SER 2230.0201
THR 2240.0123
ILE 2250.0093
GLY 2260.0173
THR 2270.0122
GLY 2280.0047
SER 2290.0137
LYS 2300.0122
LYS 2310.0063
THR 2320.0055
ILE 2330.0053
LEU 2340.0029
ILE 2350.0049
TYR 2360.0052
SER 2370.0062
ILE 2380.0059
ILE 2390.0052
GLY 2400.0054
VAL 2410.0014
LYS 2420.0027
LYS 2430.0037
GLY 2440.0052
THR 2450.0050
LEU 2460.0030
ALA 2470.0033
TRP 2480.0031
ALA 2490.0040
ARG 2500.0041
THR 2510.0039
GLY 2520.0034
PHE 2530.0029
SER 2540.0032
PRO 2550.0040
ALA 2560.0048
LYS 2570.0039
LYS 2580.0047
LEU 2590.0046
ASN 2600.0049
ALA 2610.0036
GLY 2620.0026
VAL 2630.0052
VAL 2640.0074
ARG 2650.0059
VAL 2660.0034
PHE 2670.0021
PHE 2680.0048
LEU 2690.0045
ASN 2700.0076
GLN 2710.0058
LYS 2720.0048
LYS 2730.0044
ALA 2740.0048
LYS 2750.0048
ASP 2760.0033
VAL 2770.0034
LEU 2780.0030
ARG 2790.0031
LYS 2800.0034
THR 2810.0078
SER 2820.0085
ARG 2830.0056
PRO 2840.0056
MET 2850.0024
VAL 2860.0072
ASP 2870.0056
LEU 2880.0026
THR 2890.0012
PHE 2900.0025
GLY 2910.0113
GLY 2920.0166

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.