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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 104  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.1532
GLU 270.0102
PRO 280.0093
CYS 290.0053
VAL 300.0023
GLU 310.0040
VAL 320.0071
VAL 330.0100
PRO 340.0103
ASN 350.0092
ILE 360.0076
THR 370.0050
TYR 380.0022
GLN 390.0048
CYS 400.0068
MET 410.0100
GLU 420.0122
LEU 430.0115
ASN 440.0119
PHE 450.0097
TYR 460.0100
LYS 470.0115
ILE 480.0083
PRO 490.0074
ASP 500.0082
ASN 510.0080
LEU 520.0060
PRO 530.0058
PHE 540.0047
SER 550.0044
THR 560.0023
LYS 570.0029
ASN 580.0036
LEU 590.0037
ASP 600.0055
LEU 610.0068
SER 620.0076
PHE 630.0086
ASN 640.0079
PRO 650.0080
LEU 660.0066
ARG 670.0047
HIS 680.0039
LEU 690.0039
GLY 700.0036
SER 710.0036
TYR 720.0047
SER 730.0049
PHE 740.0037
PHE 750.0031
SER 760.0025
PHE 770.0031
PRO 780.0027
GLU 790.0018
LEU 800.0027
GLN 810.0035
VAL 820.0041
LEU 830.0042
ASP 840.0044
LEU 850.0047
SER 860.0049
ARG 870.0041
CYS 880.0042
GLU 890.0037
ILE 900.0040
GLN 910.0037
THR 920.0039
ILE 930.0036
GLU 940.0039
ASP 950.0041
GLY 960.0039
ALA 970.0043
TYR 980.0041
GLN 990.0046
SER 1000.0046
LEU 1010.0042
SER 1020.0052
HIS 1030.0053
LEU 1040.0046
SER 1050.0045
THR 1060.0041
LEU 1070.0035
ILE 1080.0029
LEU 1090.0020
THR 1100.0019
GLY 1110.0017
ASN 1120.0029
PRO 1130.0031
ILE 1140.0029
GLN 1150.0035
SER 1160.0034
LEU 1170.0047
ALA 1180.0047
LEU 1190.0038
GLY 1200.0038
ALA 1210.0034
PHE 1220.0025
SER 1230.0036
GLY 1240.0042
LEU 1250.0031
SER 1260.0040
SER 1270.0042
LEU 1280.0030
GLN 1290.0045
LYS 1300.0042
LEU 1310.0023
VAL 1320.0027
ALA 1330.0022
VAL 1340.0028
GLU 1350.0030
THR 1360.0022
ASN 1370.0049
LEU 1380.0050
ALA 1390.0045
SER 1400.0047
LEU 1410.0053
GLU 1420.0048
ASN 1430.0047
PHE 1440.0041
PRO 1450.0035
ILE 1460.0031
GLY 1470.0048
HIS 1480.0036
LEU 1490.0013
LYS 1500.0014
THR 1510.0023
LEU 1520.0045
LYS 1530.0065
GLU 1540.0055
LEU 1550.0044
ASN 1560.0038
VAL 1570.0041
ALA 1580.0046
HIS 1590.0049
ASN 1600.0049
LEU 1610.0055
ILE 1620.0068
GLN 1630.0059
SER 1640.0067
PHE 1650.0080
LYS 1660.0082
LEU 1670.0070
PRO 1680.0067
GLU 1690.0064
TYR 1700.0066
PHE 1710.0070
SER 1720.0063
ASN 1730.0049
LEU 1740.0033
THR 1750.0031
ASN 1760.0024
LEU 1770.0047
GLU 1780.0055
HIS 1790.0041
LEU 1800.0039
ASP 1810.0033
LEU 1820.0054
SER 1830.0052
SER 1840.0056
ASN 1850.0061
LYS 1860.0065
ILE 1870.0085
GLN 1880.0077
SER 1890.0089
ILE 1900.0104
TYR 1910.0113
CYS 1920.0109
THR 1930.0101
ASP 1940.0102
LEU 1950.0110
ARG 1960.0106
VAL 1970.0086
LEU 1980.0090
HIS 1990.0089
GLN 2000.0085
MET 2010.0089
PRO 2020.0056
LEU 2030.0051
LEU 2040.0043
ASN 2050.0032
LEU 2060.0032
SER 2070.0045
LEU 2080.0049
ASP 2090.0055
LEU 2100.0062
SER 2110.0065
LEU 2120.0074
ASN 2130.0079
PRO 2140.0071
MET 2150.0075
ASN 2160.0072
PHE 2170.0104
ILE 2180.0113
GLN 2190.0123
PRO 2200.0127
GLY 2210.0138
ALA 2220.0127
PHE 2230.0120
LYS 2240.0132
GLU 2250.0142
ILE 2260.0135
ARG 2270.0084
LEU 2280.0083
HIS 2290.0092
LYS 2300.0078
LEU 2310.0057
THR 2320.0063
LEU 2330.0058
ARG 2340.0060
ASN 2350.0063
ASN 2360.0070
PHE 2370.0066
ASP 2380.0060
SER 2390.0050
LEU 2400.0045
ASN 2410.0071
VAL 2420.0079
MET 2430.0062
LYS 2440.0065
THR 2450.0095
CYS 2460.0098
ILE 2470.0073
GLN 2480.0086
GLY 2490.0110
LEU 2500.0099
ALA 2510.0093
GLY 2520.0083
LEU 2530.0078
GLU 2540.0075
VAL 2550.0079
HIS 2560.0094
ARG 2570.0081
LEU 2580.0059
VAL 2590.0058
LEU 2600.0036
GLY 2610.0031
GLU 2620.0040
PHE 2630.0066
ARG 2640.0070
ASN 2650.0090
GLU 2660.0082
GLY 2670.0056
ASN 2680.0035
LEU 2690.0028
GLU 2700.0033
LYS 2710.0037
PHE 2720.0026
ASP 2730.0043
LYS 2740.0044
SER 2750.0030
ALA 2760.0016
LEU 2770.0026
GLU 2780.0029
GLY 2790.0032
LEU 2800.0033
CYS 2810.0026
ASN 2820.0048
LEU 2830.0047
THR 2840.0048
ILE 2850.0069
GLU 2860.0090
GLU 2870.0101
PHE 2880.0082
ARG 2890.0076
LEU 2900.0061
ALA 2910.0060
TYR 2920.0037
LEU 2930.0024
ASP 2940.0011
TYR 2950.0018
TYR 2960.0030
LEU 2970.0040
ASP 2980.0053
GLY 2990.0065
ILE 3000.0072
ILE 3010.0087
ASP 3020.0075
LEU 3030.0059
PHE 3040.0071
ASN 3050.0080
CYS 3060.0074
LEU 3070.0080
THR 3080.0090
ASN 3090.0108
VAL 3100.0107
SER 3110.0124
SER 3120.0117
PHE 3130.0101
SER 3140.0091
LEU 3150.0078
VAL 3160.0075
SER 3170.0053
VAL 3180.0040
THR 3190.0025
ILE 3200.0038
GLU 3210.0043
ARG 3220.0059
VAL 3230.0056
LYS 3240.0078
ASP 3250.0085
PHE 3260.0080
SER 3270.0092
TYR 3280.0101
ASN 3290.0116
PHE 3300.0111
GLY 3310.0130
TRP 3320.0093
GLN 3330.0092
HIS 3340.0086
LEU 3350.0081
GLU 3360.0080
LEU 3370.0056
VAL 3380.0069
ASN 3390.0072
CYS 3400.0046
LYS 3410.0046
PHE 3420.0046
GLY 3430.0063
GLN 3440.0062
PHE 3450.0046
PRO 3460.0042
THR 3470.0053
LEU 3480.0057
LYS 3490.0077
LEU 3500.0090
LYS 3510.0106
SER 3520.0074
LEU 3530.0067
LYS 3540.0066
ARG 3550.0061
LEU 3560.0055
THR 3570.0056
PHE 3580.0042
THR 3590.0076
SER 3600.0101
ASN 3610.0081
LYS 3620.0113
GLY 3630.0103
GLY 3640.0103
ASN 3650.0102
ALA 3660.0102
PHE 3670.0090
SER 3680.0061
GLU 3690.0043
VAL 3700.0025
ASP 3710.0043
LEU 3720.0047
PRO 3730.0053
SER 3740.0048
LEU 3750.0045
GLU 3760.0049
PHE 3770.0044
LEU 3780.0039
ASP 3790.0060
LEU 3800.0065
SER 3810.0088
ARG 3820.0123
ASN 3830.0119
GLY 3840.0125
LEU 3850.0112
SER 3860.0111
PHE 3870.0125
LYS 3880.0126
GLY 3890.0123
CYS 3900.0113
CYS 3910.0109
SER 3920.0082
GLN 3930.0070
SER 3940.0049
ASP 3950.0055
PHE 3960.0057
GLY 3970.0038
THR 3980.0041
ILE 3990.0060
SER 4000.0060
LEU 4010.0052
LYS 4020.0068
TYR 4030.0076
LEU 4040.0078
ASP 4050.0089
LEU 4060.0092
SER 4070.0108
PHE 4080.0115
ASN 4090.0117
GLY 4100.0116
VAL 4110.0109
ILE 4120.0114
THR 4130.0116
MET 4140.0107
SER 4150.0121
SER 4160.0117
ASN 4170.0093
PHE 4180.0094
LEU 4190.0098
GLY 4200.0100
LEU 4210.0096
GLU 4220.0090
GLN 4230.0091
LEU 4240.0083
GLU 4250.0077
HIS 4260.0073
LEU 4270.0084
ASP 4280.0081
PHE 4290.0074
GLN 4300.0066
HIS 4310.0063
SER 4320.0088
ASN 4330.0081
LEU 4340.0080
LYS 4350.0096
GLN 4360.0106
MET 4370.0071
SER 4380.0086
GLU 4390.0116
PHE 4400.0096
SER 4410.0061
VAL 4420.0072
PHE 4430.0062
LEU 4440.0068
SER 4450.0080
LEU 4460.0072
ARG 4470.0061
ASN 4480.0076
LEU 4490.0057
ILE 4500.0059
TYR 4510.0047
LEU 4520.0041
ASP 4530.0042
ILE 4540.0020
SER 4550.0033
HIS 4560.0023
THR 4570.0041
HIS 4580.0035
THR 4590.0034
ARG 4600.0058
VAL 4610.0059
ALA 4620.0087
PHE 4630.0073
ASN 4640.0067
GLY 4650.0041
ILE 4660.0028
PHE 4670.0025
ASN 4680.0021
GLY 4690.0014
LEU 4700.0029
SER 4710.0044
SER 4720.0055
LEU 4730.0050
GLU 4740.0071
VAL 4750.0069
LEU 4760.0061
LYS 4770.0075
MET 4780.0071
ALA 4790.0080
GLY 4800.0076
ASN 4810.0070
SER 4820.0081
PHE 4830.0079
GLN 4840.0081
GLU 4850.0097
ASN 4860.0099
PHE 4870.0094
LEU 4880.0093
PRO 4890.0091
ASP 4900.0090
ILE 4910.0090
PHE 4920.0086
THR 4930.0086
GLU 4940.0080
LEU 4950.0083
ARG 4960.0090
ASN 4970.0086
LEU 4980.0089
THR 4990.0093
PHE 5000.0098
LEU 5010.0097
ASP 5020.0103
LEU 5030.0103
SER 5040.0106
GLN 5050.0107
CYS 5060.0104
GLN 5070.0104
LEU 5080.0095
GLU 5090.0090
GLN 5100.0085
LEU 5110.0082
SER 5120.0087
PRO 5130.0071
THR 5140.0076
ALA 5150.0085
PHE 5160.0076
ASN 5170.0074
SER 5180.0079
LEU 5190.0080
SER 5200.0075
SER 5210.0082
LEU 5220.0079
GLN 5230.0091
VAL 5240.0094
LEU 5250.0085
ASN 5260.0096
MET 5270.0080
SER 5280.0085
HIS 5290.0093
ASN 5300.0089
ASN 5310.0087
PHE 5320.0051
PHE 5330.0049
SER 5340.0042
LEU 5350.0029
ASP 5360.0037
THR 5370.0051
PHE 5380.0059
PRO 5390.0034
TYR 5400.0047
LYS 5410.0070
CYS 5420.0050
LEU 5430.0059
ASN 5440.0074
SER 5450.0087
LEU 5460.0077
GLN 5470.0095
VAL 5480.0082
LEU 5490.0057
ASP 5500.0059
TYR 5510.0046
SER 5520.0032
LEU 5530.0037
ASN 5540.0037
HIS 5550.0041
ILE 5560.0032
MET 5570.0056
THR 5580.0084
SER 5590.0091
LYS 5600.0111
LYS 5610.0111
GLN 5620.0132
GLU 5630.0125
LEU 5640.0106
GLN 5650.0139
HIS 5660.0120
PHE 5670.0088
PRO 5680.0102
SER 5690.0124
SER 5700.0123
LEU 5710.0103
ALA 5720.0078
PHE 5730.0062
LEU 5740.0047
ASN 5750.0038
LEU 5760.0033
THR 5770.0048
GLN 5780.0053
ASN 5790.0053
ASP 5800.0058
PHE 5810.0057
ALA 5820.0090
CYS 5830.0011
THR 5840.0104
CYS 5850.0167
GLU 5860.0193
HIS 5870.0086
GLN 5880.0059
SER 5890.0052
PHE 5900.0054
LEU 5910.0016
GLN 5920.0024
TRP 5930.0052
ILE 5940.0070
LYS 5950.0068
ASP 5960.0065
GLN 5970.0069
ARG 5980.0058
GLN 5990.0066
LEU 6000.0060
LEU 6010.0047
VAL 6020.0043
GLU 6030.0049
VAL 6040.0050
GLU 6050.0063
ARG 6060.0064
MET 6070.0090
GLU 6080.0091
CYS 6090.0071
ALA 6100.0092
THR 6110.0085
PRO 6120.0078
SER 6130.0101
ASP 6140.0051
LYS 6150.0045
GLN 6160.0102
GLY 6170.0115
MET 6180.0096
PRO 6190.0106
VAL 6200.0075
LEU 6210.0086
SER 6220.0185
LEU 6230.0103
ASN 6240.0185
ILE 6250.0183
THR 6260.0295
CYS 6270.0381
GLU 10.0240
ALA 20.0295
ALA 30.0302
ALA 40.0187
LYS 50.0128
MET 60.0151
GLN 70.0201
ARG 80.0228
LEU 90.0161
VAL 100.0151
LEU 110.0032
LEU 120.0156
LEU 130.0076
ALA 140.0106
ILE 150.0222
SER 160.0191
LEU 170.0120
LEU 180.0335
LEU 190.0329
TYR 200.0117
GLN 210.0169
ASP 220.0233
LEU 230.0123
PRO 240.0037
VAL 250.0166
ARG 260.0428
SER 270.0252
GLU 280.0451
PHE 290.0394
GLU 300.0152
LEU 310.0175
ASP 320.0206
ARG 330.0147
ILE 340.0142
CYS 350.0196
GLY 360.0089
TYR 370.0107
GLY 380.0139
THR 390.0139
ALA 400.0128
ARG 410.0139
CYS 420.0162
ARG 430.0263
LYS 440.0361
LYS 450.0410
CYS 460.0259
ARG 470.0241
SER 480.0225
GLN 490.0145
GLU 500.0152
TYR 510.0220
ARG 520.0216
ILE 530.0191
GLY 540.0191
ARG 550.0145
CYS 560.0112
PRO 570.0214
ASN 580.0178
THR 590.0104
TYR 600.0197
ALA 610.0181
CYS 620.0110
CYS 630.0125
LEU 640.0076
ARG 650.0090
LYS 660.0098
TRP 670.0078
ASP 680.0071
GLU 690.0051
SER 700.0058
LEU 710.0057
LEU 720.0046
ASN 730.0031
ARG 740.0044
THR 750.0049
LYS 760.0047
PRO 770.0087
GLU 780.0095
ALA 790.0141
ALA 800.0164
ALA 810.0069
LYS 820.0054
LYS 830.0048
GLU 840.0044
MET 850.0041
ASN 860.0037
LEU 870.0033
SER 880.0027
VAL 890.0036
GLY 900.0043
LEU 910.0069
GLY 920.0094
GLY 930.0133
GLY 940.0113
SER 950.0077
ASN 960.0038
LEU 970.0024
SER 980.0017
VAL 990.0031
GLY 1000.0056
LEU 1010.0065
GLY 1020.0064
GLU 1030.0052
ILE 1040.0043
GLY 1050.0039
GLY 1060.0124
GLY 1070.0082
SER 1080.0036
LYS 1090.0037
LEU 1100.0074
LEU 1110.0066
ASP 1120.0059
ILE 1130.0041
ASN 1140.0044
LEU 1150.0056
GLY 1160.0085
ARG 1170.0076
GLY 1180.0123
GLY 1190.0178
GLY 1200.0210
SER 1210.0080
MET 1220.0068
VAL 1230.0056
ASP 1240.0052
LEU 1250.0058
THR 1260.0067
PHE 1270.0046
GLY 1280.0047
GLY 1290.0046
VAL 1300.0040
GLY 1310.0050
GLY 1320.0032
GLY 1330.0031
SER 1340.0046
THR 1350.0080
PHE 1360.0066
THR 1370.0061
PHE 1380.0059
PHE 1390.0053
PRO 1400.0051
LEU 1410.0047
VAL 1420.0036
ILE 1430.0053
GLY 1440.0073
GLY 1450.0089
GLY 1460.0093
SER 1470.0073
ASP 1480.0052
ALA 1490.0070
MET 1500.0056
TYR 1510.0072
LEU 1520.0071
GLY 1530.0067
PHE 1540.0073
ALA 1550.0074
ALA 1560.0089
GLY 1570.0115
GLY 1580.0112
GLY 1590.0123
SER 1600.0099
ALA 1610.0051
GLY 1620.0058
GLY 1630.0072
GLU 1640.0073
ASN 1650.0080
HIS 1660.0060
VAL 1670.0061
ALA 1680.0063
PHE 1690.0067
GLY 1700.0080
PRO 1710.0149
GLY 1720.0074
PRO 1730.0104
GLY 1740.0101
VAL 1750.0062
ASP 1760.0039
LEU 1770.0044
THR 1780.0045
PHE 1790.0070
GLY 1800.0084
GLY 1810.0087
VAL 1820.0070
GLN 1830.0035
PHE 1840.0051
ALA 1850.0059
MET 1860.0102
VAL 1870.0170
ASN 1880.0130
ASN 1890.0086
GLY 1900.0189
PRO 1910.0097
GLY 1920.0074
PRO 1930.0055
GLY 1940.0076
GLU 1950.0099
SER 1960.0117
PHE 1970.0022
THR 1980.0062
ALA 1990.0112
GLN 2000.0106
PRO 2010.0072
ALA 2020.0042
ASP 2030.0079
MET 2040.0106
GLN 2050.0154
ALA 2060.0141
GLY 2070.0096
ILE 2080.0088
LYS 2090.0040
GLY 2100.0030
PRO 2110.0104
GLY 2120.0098
PRO 2130.0056
GLY 2140.0104
GLY 2150.0082
SER 2160.0055
ILE 2170.0045
GLN 2180.0061
VAL 2190.0061
ILE 2200.0078
ASN 2210.0117
GLY 2220.0179
SER 2230.0140
THR 2240.0088
ILE 2250.0163
GLY 2260.0234
THR 2270.0215
GLY 2280.0120
SER 2290.0095
LYS 2300.0157
LYS 2310.0224
THR 2320.0236
ILE 2330.0124
LEU 2340.0084
ILE 2350.0119
TYR 2360.0125
SER 2370.0109
ILE 2380.0093
ILE 2390.0090
GLY 2400.0096
VAL 2410.0135
LYS 2420.0114
LYS 2430.0137
GLY 2440.0123
THR 2450.0088
LEU 2460.0105
ALA 2470.0093
TRP 2480.0088
ALA 2490.0071
ARG 2500.0066
THR 2510.0144
GLY 2520.0205
PHE 2530.0132
SER 2540.0181
PRO 2550.0148
ALA 2560.0214
LYS 2570.0127
LYS 2580.0024
LEU 2590.0042
ASN 2600.0112
ALA 2610.0138
GLY 2620.0216
VAL 2630.0127
VAL 2640.0204
ARG 2650.0193
VAL 2660.0096
PHE 2670.0060
PHE 2680.0020
LEU 2690.0069
ASN 2700.0098
GLN 2710.0066
LYS 2720.0066
LYS 2730.0083
ALA 2740.0084
LYS 2750.0082
ASP 2760.0155
VAL 2770.0177
LEU 2780.0126
ARG 2790.0142
LYS 2800.0255
THR 2810.0333
SER 2820.0270
ARG 2830.0306
PRO 2840.0310
MET 2850.0442
VAL 2860.0348
ASP 2870.0227
LEU 2880.0316
THR 2890.0283
PHE 2900.0218
GLY 2910.0874
GLY 2920.1532

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.