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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 105  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0927
GLU 270.0076
PRO 280.0082
CYS 290.0057
VAL 300.0066
GLU 310.0051
VAL 320.0062
VAL 330.0042
PRO 340.0017
ASN 350.0019
ILE 360.0032
THR 370.0026
TYR 380.0018
GLN 390.0032
CYS 400.0022
MET 410.0037
GLU 420.0043
LEU 430.0036
ASN 440.0027
PHE 450.0013
TYR 460.0009
LYS 470.0014
ILE 480.0019
PRO 490.0024
ASP 500.0052
ASN 510.0062
LEU 520.0033
PRO 530.0038
PHE 540.0052
SER 550.0048
THR 560.0030
LYS 570.0039
ASN 580.0034
LEU 590.0026
ASP 600.0026
LEU 610.0020
SER 620.0028
PHE 630.0030
ASN 640.0023
PRO 650.0024
LEU 660.0023
ARG 670.0035
HIS 680.0035
LEU 690.0032
GLY 700.0037
SER 710.0036
TYR 720.0025
SER 730.0027
PHE 740.0021
PHE 750.0021
SER 760.0037
PHE 770.0031
PRO 780.0036
GLU 790.0040
LEU 800.0033
GLN 810.0036
VAL 820.0025
LEU 830.0024
ASP 840.0024
LEU 850.0025
SER 860.0026
ARG 870.0033
CYS 880.0033
GLU 890.0033
ILE 900.0033
GLN 910.0032
THR 920.0024
ILE 930.0018
GLU 940.0030
ASP 950.0034
GLY 960.0027
ALA 970.0020
TYR 980.0013
GLN 990.0018
SER 1000.0015
LEU 1010.0011
SER 1020.0008
HIS 1030.0010
LEU 1040.0011
SER 1050.0023
THR 1060.0024
LEU 1070.0018
ILE 1080.0016
LEU 1090.0017
THR 1100.0016
GLY 1110.0017
ASN 1120.0018
PRO 1130.0013
ILE 1140.0007
GLN 1150.0009
SER 1160.0019
LEU 1170.0016
ALA 1180.0019
LEU 1190.0034
GLY 1200.0032
ALA 1210.0016
PHE 1220.0024
SER 1230.0028
GLY 1240.0026
LEU 1250.0024
SER 1260.0032
SER 1270.0032
LEU 1280.0034
GLN 1290.0035
LYS 1300.0037
LEU 1310.0038
VAL 1320.0030
ALA 1330.0029
VAL 1340.0028
GLU 1350.0026
THR 1360.0027
ASN 1370.0070
LEU 1380.0068
ALA 1390.0076
SER 1400.0075
LEU 1410.0069
GLU 1420.0086
ASN 1430.0084
PHE 1440.0075
PRO 1450.0069
ILE 1460.0063
GLY 1470.0070
HIS 1480.0062
LEU 1490.0054
LYS 1500.0054
THR 1510.0046
LEU 1520.0048
LYS 1530.0047
GLU 1540.0049
LEU 1550.0053
ASN 1560.0057
VAL 1570.0043
ALA 1580.0048
HIS 1590.0059
ASN 1600.0062
LEU 1610.0070
ILE 1620.0060
GLN 1630.0060
SER 1640.0055
PHE 1650.0044
LYS 1660.0053
LEU 1670.0068
PRO 1680.0079
GLU 1690.0081
TYR 1700.0081
PHE 1710.0068
SER 1720.0074
ASN 1730.0071
LEU 1740.0061
THR 1750.0053
ASN 1760.0045
LEU 1770.0043
GLU 1780.0042
HIS 1790.0045
LEU 1800.0047
ASP 1810.0051
LEU 1820.0031
SER 1830.0035
SER 1840.0044
ASN 1850.0045
LYS 1860.0047
ILE 1870.0026
GLN 1880.0024
SER 1890.0020
ILE 1900.0017
TYR 1910.0016
CYS 1920.0027
THR 1930.0041
ASP 1940.0040
LEU 1950.0036
ARG 1960.0053
VAL 1970.0059
LEU 1980.0040
HIS 1990.0046
GLN 2000.0063
MET 2010.0053
PRO 2020.0045
LEU 2030.0039
LEU 2040.0029
ASN 2050.0019
LEU 2060.0028
SER 2070.0029
LEU 2080.0022
ASP 2090.0025
LEU 2100.0019
SER 2110.0028
LEU 2120.0031
ASN 2130.0027
PRO 2140.0031
MET 2150.0030
ASN 2160.0034
PHE 2170.0040
ILE 2180.0033
GLN 2190.0035
PRO 2200.0041
GLY 2210.0039
ALA 2220.0021
PHE 2230.0019
LYS 2240.0035
GLU 2250.0037
ILE 2260.0021
ARG 2270.0023
LEU 2280.0022
HIS 2290.0027
LYS 2300.0030
LEU 2310.0029
THR 2320.0039
LEU 2330.0036
ARG 2340.0032
ASN 2350.0033
ASN 2360.0037
PHE 2370.0049
ASP 2380.0058
SER 2390.0056
LEU 2400.0049
ASN 2410.0051
VAL 2420.0056
MET 2430.0047
LYS 2440.0043
THR 2450.0051
CYS 2460.0049
ILE 2470.0044
GLN 2480.0048
GLY 2490.0047
LEU 2500.0039
ALA 2510.0041
GLY 2520.0041
LEU 2530.0032
GLU 2540.0029
VAL 2550.0028
HIS 2560.0031
ARG 2570.0033
LEU 2580.0028
VAL 2590.0024
LEU 2600.0025
GLY 2610.0030
GLU 2620.0043
PHE 2630.0056
ARG 2640.0065
ASN 2650.0075
GLU 2660.0067
GLY 2670.0079
ASN 2680.0069
LEU 2690.0062
GLU 2700.0069
LYS 2710.0059
PHE 2720.0057
ASP 2730.0049
LYS 2740.0037
SER 2750.0024
ALA 2760.0031
LEU 2770.0026
GLU 2780.0019
GLY 2790.0029
LEU 2800.0025
CYS 2810.0022
ASN 2820.0038
LEU 2830.0035
THR 2840.0033
ILE 2850.0031
GLU 2860.0033
GLU 2870.0034
PHE 2880.0020
ARG 2890.0015
LEU 2900.0015
ALA 2910.0025
TYR 2920.0049
LEU 2930.0055
ASP 2940.0073
TYR 2950.0073
TYR 2960.0077
LEU 2970.0078
ASP 2980.0090
GLY 2990.0077
ILE 3000.0060
ILE 3010.0070
ASP 3020.0044
LEU 3030.0037
PHE 3040.0021
ASN 3050.0026
CYS 3060.0011
LEU 3070.0009
THR 3080.0020
ASN 3090.0030
VAL 3100.0026
SER 3110.0035
SER 3120.0031
PHE 3130.0016
SER 3140.0010
LEU 3150.0009
VAL 3160.0020
SER 3170.0045
VAL 3180.0047
THR 3190.0059
ILE 3200.0060
GLU 3210.0075
ARG 3220.0074
VAL 3230.0054
LYS 3240.0072
ASP 3250.0065
PHE 3260.0048
SER 3270.0057
TYR 3280.0053
ASN 3290.0051
PHE 3300.0037
GLY 3310.0040
TRP 3320.0020
GLN 3330.0028
HIS 3340.0027
LEU 3350.0021
GLU 3360.0019
LEU 3370.0004
VAL 3380.0016
ASN 3390.0023
CYS 3400.0020
LYS 3410.0029
PHE 3420.0022
GLY 3430.0034
GLN 3440.0027
PHE 3450.0020
PRO 3460.0029
THR 3470.0031
LEU 3480.0030
LYS 3490.0036
LEU 3500.0034
LYS 3510.0039
SER 3520.0020
LEU 3530.0025
LYS 3540.0030
ARG 3550.0034
LEU 3560.0035
THR 3570.0030
PHE 3580.0022
THR 3590.0025
SER 3600.0021
ASN 3610.0010
LYS 3620.0022
GLY 3630.0014
GLY 3640.0007
ASN 3650.0021
ALA 3660.0028
PHE 3670.0034
SER 3680.0035
GLU 3690.0034
VAL 3700.0034
ASP 3710.0034
LEU 3720.0027
PRO 3730.0029
SER 3740.0018
LEU 3750.0027
GLU 3760.0036
PHE 3770.0032
LEU 3780.0032
ASP 3790.0033
LEU 3800.0033
SER 3810.0033
ARG 3820.0036
ASN 3830.0039
GLY 3840.0050
LEU 3850.0050
SER 3860.0061
PHE 3870.0069
LYS 3880.0079
GLY 3890.0078
CYS 3900.0062
CYS 3910.0056
SER 3920.0057
GLN 3930.0054
SER 3940.0065
ASP 3950.0059
PHE 3960.0047
GLY 3970.0036
THR 3980.0034
ILE 3990.0044
SER 4000.0031
LEU 4010.0036
LYS 4020.0021
TYR 4030.0018
LEU 4040.0025
ASP 4050.0025
LEU 4060.0032
SER 4070.0022
PHE 4080.0034
ASN 4090.0046
GLY 4100.0056
VAL 4110.0055
ILE 4120.0054
THR 4130.0061
MET 4140.0055
SER 4150.0072
SER 4160.0074
ASN 4170.0069
PHE 4180.0059
LEU 4190.0076
GLY 4200.0072
LEU 4210.0053
GLU 4220.0065
GLN 4230.0055
LEU 4240.0037
GLU 4250.0035
HIS 4260.0019
LEU 4270.0019
ASP 4280.0009
PHE 4290.0006
GLN 4300.0009
HIS 4310.0016
SER 4320.0030
ASN 4330.0036
LEU 4340.0027
LYS 4350.0034
GLN 4360.0032
MET 4370.0020
SER 4380.0015
GLU 4390.0034
PHE 4400.0043
SER 4410.0048
VAL 4420.0040
PHE 4430.0041
LEU 4440.0061
SER 4450.0071
LEU 4460.0058
ARG 4470.0076
ASN 4480.0074
LEU 4490.0053
ILE 4500.0063
TYR 4510.0050
LEU 4520.0036
ASP 4530.0032
ILE 4540.0028
SER 4550.0033
HIS 4560.0032
THR 4570.0014
HIS 4580.0020
THR 4590.0018
ARG 4600.0032
VAL 4610.0040
ALA 4620.0025
PHE 4630.0025
ASN 4640.0041
GLY 4650.0043
ILE 4660.0034
PHE 4670.0039
ASN 4680.0047
GLY 4690.0055
LEU 4700.0055
SER 4710.0070
SER 4720.0069
LEU 4730.0059
GLU 4740.0071
VAL 4750.0066
LEU 4760.0055
LYS 4770.0055
MET 4780.0052
ALA 4790.0056
GLY 4800.0055
ASN 4810.0050
SER 4820.0051
PHE 4830.0047
GLN 4840.0045
GLU 4850.0045
ASN 4860.0047
PHE 4870.0049
LEU 4880.0049
PRO 4890.0044
ASP 4900.0044
ILE 4910.0044
PHE 4920.0047
THR 4930.0046
GLU 4940.0047
LEU 4950.0051
ARG 4960.0056
ASN 4970.0055
LEU 4980.0054
THR 4990.0063
PHE 5000.0063
LEU 5010.0057
ASP 5020.0055
LEU 5030.0053
SER 5040.0055
GLN 5050.0056
CYS 5060.0053
GLN 5070.0052
LEU 5080.0047
GLU 5090.0045
GLN 5100.0040
LEU 5110.0037
SER 5120.0041
PRO 5130.0031
THR 5140.0029
ALA 5150.0037
PHE 5160.0032
ASN 5170.0024
SER 5180.0031
LEU 5190.0036
SER 5200.0028
SER 5210.0038
LEU 5220.0033
GLN 5230.0036
VAL 5240.0038
LEU 5250.0036
ASN 5260.0040
MET 5270.0028
SER 5280.0033
HIS 5290.0041
ASN 5300.0039
ASN 5310.0042
PHE 5320.0046
PHE 5330.0051
SER 5340.0046
LEU 5350.0037
ASP 5360.0039
THR 5370.0038
PHE 5380.0039
PRO 5390.0025
TYR 5400.0016
LYS 5410.0028
CYS 5420.0011
LEU 5430.0005
ASN 5440.0020
SER 5450.0022
LEU 5460.0009
GLN 5470.0015
VAL 5480.0012
LEU 5490.0010
ASP 5500.0014
TYR 5510.0018
SER 5520.0022
LEU 5530.0027
ASN 5540.0031
HIS 5550.0041
ILE 5560.0042
MET 5570.0053
THR 5580.0053
SER 5590.0056
LYS 5600.0068
LYS 5610.0071
GLN 5620.0076
GLU 5630.0069
LEU 5640.0059
GLN 5650.0061
HIS 5660.0054
PHE 5670.0039
PRO 5680.0037
SER 5690.0043
SER 5700.0035
LEU 5710.0028
ALA 5720.0032
PHE 5730.0032
LEU 5740.0032
ASN 5750.0032
LEU 5760.0033
THR 5770.0039
GLN 5780.0043
ASN 5790.0046
ASP 5800.0049
PHE 5810.0045
ALA 5820.0071
CYS 5830.0064
THR 5840.0076
CYS 5850.0075
GLU 5860.0068
HIS 5870.0037
GLN 5880.0028
SER 5890.0009
PHE 5900.0021
LEU 5910.0021
GLN 5920.0012
TRP 5930.0023
ILE 5940.0033
LYS 5950.0018
ASP 5960.0024
GLN 5970.0038
ARG 5980.0041
GLN 5990.0046
LEU 6000.0049
LEU 6010.0049
VAL 6020.0062
GLU 6030.0060
VAL 6040.0079
GLU 6050.0077
ARG 6060.0061
MET 6070.0078
GLU 6080.0083
CYS 6090.0080
ALA 6100.0105
THR 6110.0110
PRO 6120.0138
SER 6130.0173
ASP 6140.0183
LYS 6150.0151
GLN 6160.0158
GLY 6170.0133
MET 6180.0101
PRO 6190.0076
VAL 6200.0053
LEU 6210.0030
SER 6220.0032
LEU 6230.0063
ASN 6240.0091
ILE 6250.0082
THR 6260.0132
CYS 6270.0128
GLU 10.0194
ALA 20.0212
ALA 30.0194
ALA 40.0102
LYS 50.0118
MET 60.0120
GLN 70.0158
ARG 80.0171
LEU 90.0119
VAL 100.0129
LEU 110.0027
LEU 120.0122
LEU 130.0048
ALA 140.0101
ILE 150.0186
SER 160.0151
LEU 170.0115
LEU 180.0266
LEU 190.0248
TYR 200.0093
GLN 210.0146
ASP 220.0170
LEU 230.0066
PRO 240.0054
VAL 250.0134
ARG 260.0192
SER 270.0117
GLU 280.0199
PHE 290.0179
GLU 300.0074
LEU 310.0090
ASP 320.0102
ARG 330.0088
ILE 340.0082
CYS 350.0095
GLY 360.0075
TYR 370.0082
GLY 380.0090
THR 390.0099
ALA 400.0086
ARG 410.0073
CYS 420.0071
ARG 430.0099
LYS 440.0130
LYS 450.0135
CYS 460.0082
ARG 470.0078
SER 480.0062
GLN 490.0044
GLU 500.0042
TYR 510.0027
ARG 520.0053
ILE 530.0077
GLY 540.0089
ARG 550.0074
CYS 560.0026
PRO 570.0054
ASN 580.0040
THR 590.0065
TYR 600.0088
ALA 610.0063
CYS 620.0025
CYS 630.0033
LEU 640.0036
ARG 650.0047
LYS 660.0057
TRP 670.0072
ASP 680.0057
GLU 690.0039
SER 700.0045
LEU 710.0059
LEU 720.0052
ASN 730.0026
ARG 740.0032
THR 750.0057
LYS 760.0076
PRO 770.0135
GLU 780.0167
ALA 790.0233
ALA 800.0232
ALA 810.0414
LYS 820.0309
LYS 830.0320
GLU 840.0264
MET 850.0244
ASN 860.0282
LEU 870.0225
SER 880.0222
VAL 890.0203
GLY 900.0200
LEU 910.0240
GLY 920.0378
GLY 930.0445
GLY 940.0252
SER 950.0204
ASN 960.0329
LEU 970.0303
SER 980.0334
VAL 990.0331
GLY 1000.0378
LEU 1010.0193
GLY 1020.0293
GLU 1030.0469
ILE 1040.0505
GLY 1050.0650
GLY 1060.0850
GLY 1070.0647
SER 1080.0514
LYS 1090.0204
LEU 1100.0163
LEU 1110.0314
ASP 1120.0302
ILE 1130.0190
ASN 1140.0193
LEU 1150.0088
GLY 1160.0148
ARG 1170.0131
GLY 1180.0186
GLY 1190.0228
GLY 1200.0343
SER 1210.0151
MET 1220.0138
VAL 1230.0125
ASP 1240.0109
LEU 1250.0099
THR 1260.0041
PHE 1270.0040
GLY 1280.0048
GLY 1290.0046
VAL 1300.0048
GLY 1310.0289
GLY 1320.0155
GLY 1330.0094
SER 1340.0076
THR 1350.0209
PHE 1360.0111
THR 1370.0089
PHE 1380.0097
PHE 1390.0075
PRO 1400.0097
LEU 1410.0093
VAL 1420.0123
ILE 1430.0187
GLY 1440.0297
GLY 1450.0398
GLY 1460.0634
SER 1470.0493
ASP 1480.0277
ALA 1490.0290
MET 1500.0180
TYR 1510.0133
LEU 1520.0143
GLY 1530.0125
PHE 1540.0133
ALA 1550.0119
ALA 1560.0096
GLY 1570.0275
GLY 1580.0292
GLY 1590.0331
SER 1600.0304
ALA 1610.0358
GLY 1620.0334
GLY 1630.0238
GLU 1640.0181
ASN 1650.0056
HIS 1660.0085
VAL 1670.0092
ALA 1680.0117
PHE 1690.0130
GLY 1700.0154
PRO 1710.0482
GLY 1720.0428
PRO 1730.0329
GLY 1740.0148
VAL 1750.0132
ASP 1760.0120
LEU 1770.0103
THR 1780.0097
PHE 1790.0085
GLY 1800.0087
GLY 1810.0114
VAL 1820.0068
GLN 1830.0058
PHE 1840.0084
ALA 1850.0103
MET 1860.0380
VAL 1870.0489
ASN 1880.0163
ASN 1890.0268
GLY 1900.0383
PRO 1910.0450
GLY 1920.0358
PRO 1930.0146
GLY 1940.0220
GLU 1950.0105
SER 1960.0105
PHE 1970.0115
THR 1980.0054
ALA 1990.0049
GLN 2000.0055
PRO 2010.0115
ALA 2020.0042
ASP 2030.0124
MET 2040.0166
GLN 2050.0148
ALA 2060.0212
GLY 2070.0198
ILE 2080.0117
LYS 2090.0133
GLY 2100.0263
PRO 2110.0114
GLY 2120.0127
PRO 2130.0094
GLY 2140.0136
GLY 2150.0181
SER 2160.0215
ILE 2170.0154
GLN 2180.0093
VAL 2190.0054
ILE 2200.0046
ASN 2210.0082
GLY 2220.0100
SER 2230.0183
THR 2240.0092
ILE 2250.0104
GLY 2260.0101
THR 2270.0026
GLY 2280.0015
SER 2290.0054
LYS 2300.0021
LYS 2310.0185
THR 2320.0187
ILE 2330.0128
LEU 2340.0129
ILE 2350.0087
TYR 2360.0120
SER 2370.0133
ILE 2380.0134
ILE 2390.0164
GLY 2400.0169
VAL 2410.0158
LYS 2420.0116
LYS 2430.0091
GLY 2440.0064
THR 2450.0084
LEU 2460.0200
ALA 2470.0201
TRP 2480.0136
ALA 2490.0141
ARG 2500.0080
THR 2510.0301
GLY 2520.0353
PHE 2530.0284
SER 2540.0328
PRO 2550.0271
ALA 2560.0281
LYS 2570.0246
LYS 2580.0159
LEU 2590.0103
ASN 2600.0093
ALA 2610.0096
GLY 2620.0135
VAL 2630.0117
VAL 2640.0245
ARG 2650.0198
VAL 2660.0005
PHE 2670.0035
PHE 2680.0112
LEU 2690.0073
ASN 2700.0173
GLN 2710.0095
LYS 2720.0058
LYS 2730.0055
ALA 2740.0068
LYS 2750.0068
ASP 2760.0099
VAL 2770.0113
LEU 2780.0086
ARG 2790.0091
LYS 2800.0140
THR 2810.0197
SER 2820.0178
ARG 2830.0186
PRO 2840.0193
MET 2850.0256
VAL 2860.0201
ASP 2870.0127
LEU 2880.0167
THR 2890.0144
PHE 2900.0116
GLY 2910.0537
GLY 2920.0927

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.