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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 106  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0642
GLU 270.0064
PRO 280.0081
CYS 290.0063
VAL 300.0065
GLU 310.0056
VAL 320.0052
VAL 330.0048
PRO 340.0058
ASN 350.0046
ILE 360.0035
THR 370.0018
TYR 380.0025
GLN 390.0038
CYS 400.0048
MET 410.0060
GLU 420.0076
LEU 430.0082
ASN 440.0100
PHE 450.0091
TYR 460.0110
LYS 470.0084
ILE 480.0065
PRO 490.0048
ASP 500.0039
ASN 510.0031
LEU 520.0021
PRO 530.0025
PHE 540.0039
SER 550.0043
THR 560.0028
LYS 570.0034
ASN 580.0033
LEU 590.0035
ASP 600.0042
LEU 610.0052
SER 620.0055
PHE 630.0066
ASN 640.0073
PRO 650.0090
LEU 660.0088
ARG 670.0086
HIS 680.0069
LEU 690.0051
GLY 700.0037
SER 710.0032
TYR 720.0046
SER 730.0045
PHE 740.0047
PHE 750.0043
SER 760.0040
PHE 770.0042
PRO 780.0053
GLU 790.0049
LEU 800.0048
GLN 810.0055
VAL 820.0052
LEU 830.0047
ASP 840.0051
LEU 850.0051
SER 860.0059
ARG 870.0062
CYS 880.0062
GLU 890.0071
ILE 900.0074
GLN 910.0084
THR 920.0055
ILE 930.0045
GLU 940.0033
ASP 950.0033
GLY 960.0031
ALA 970.0042
TYR 980.0047
GLN 990.0046
SER 1000.0046
LEU 1010.0052
SER 1020.0053
HIS 1030.0052
LEU 1040.0052
SER 1050.0051
THR 1060.0051
LEU 1070.0039
ILE 1080.0046
LEU 1090.0043
THR 1100.0061
GLY 1110.0069
ASN 1120.0062
PRO 1130.0070
ILE 1140.0065
GLN 1150.0072
SER 1160.0067
LEU 1170.0028
ALA 1180.0014
LEU 1190.0005
GLY 1200.0017
ALA 1210.0025
PHE 1220.0032
SER 1230.0030
GLY 1240.0038
LEU 1250.0042
SER 1260.0045
SER 1270.0042
LEU 1280.0035
GLN 1290.0036
LYS 1300.0035
LEU 1310.0029
VAL 1320.0042
ALA 1330.0045
VAL 1340.0069
GLU 1350.0085
THR 1360.0073
ASN 1370.0113
LEU 1380.0094
ALA 1390.0097
SER 1400.0081
LEU 1410.0065
GLU 1420.0093
ASN 1430.0097
PHE 1440.0070
PRO 1450.0064
ILE 1460.0042
GLY 1470.0064
HIS 1480.0061
LEU 1490.0047
LYS 1500.0056
THR 1510.0050
LEU 1520.0031
LYS 1530.0031
GLU 1540.0022
LEU 1550.0014
ASN 1560.0025
VAL 1570.0048
ALA 1580.0073
HIS 1590.0102
ASN 1600.0097
LEU 1610.0108
ILE 1620.0070
GLN 1630.0068
SER 1640.0056
PHE 1650.0037
LYS 1660.0056
LEU 1670.0064
PRO 1680.0083
GLU 1690.0094
TYR 1700.0091
PHE 1710.0074
SER 1720.0086
ASN 1730.0082
LEU 1740.0062
THR 1750.0068
ASN 1760.0054
LEU 1770.0030
GLU 1780.0029
HIS 1790.0021
LEU 1800.0022
ASP 1810.0036
LEU 1820.0034
SER 1830.0053
SER 1840.0071
ASN 1850.0063
LYS 1860.0060
ILE 1870.0008
GLN 1880.0012
SER 1890.0024
ILE 1900.0024
TYR 1910.0042
CYS 1920.0052
THR 1930.0062
ASP 1940.0051
LEU 1950.0055
ARG 1960.0077
VAL 1970.0073
LEU 1980.0062
HIS 1990.0071
GLN 2000.0086
MET 2010.0084
PRO 2020.0072
LEU 2030.0070
LEU 2040.0050
ASN 2050.0028
LEU 2060.0018
SER 2070.0022
LEU 2080.0020
ASP 2090.0026
LEU 2100.0027
SER 2110.0042
LEU 2120.0045
ASN 2130.0032
PRO 2140.0036
MET 2150.0041
ASN 2160.0054
PHE 2170.0054
ILE 2180.0041
GLN 2190.0054
PRO 2200.0062
GLY 2210.0058
ALA 2220.0039
PHE 2230.0031
LYS 2240.0051
GLU 2250.0058
ILE 2260.0045
ARG 2270.0023
LEU 2280.0019
HIS 2290.0023
LYS 2300.0022
LEU 2310.0019
THR 2320.0045
LEU 2330.0049
ARG 2340.0055
ASN 2350.0064
ASN 2360.0064
PHE 2370.0078
ASP 2380.0100
SER 2390.0110
LEU 2400.0109
ASN 2410.0102
VAL 2420.0092
MET 2430.0082
LYS 2440.0079
THR 2450.0073
CYS 2460.0062
ILE 2470.0051
GLN 2480.0052
GLY 2490.0040
LEU 2500.0022
ALA 2510.0024
GLY 2520.0013
LEU 2530.0005
GLU 2540.0015
VAL 2550.0026
HIS 2560.0041
ARG 2570.0047
LEU 2580.0042
VAL 2590.0045
LEU 2600.0049
GLY 2610.0059
GLU 2620.0071
PHE 2630.0076
ARG 2640.0091
ASN 2650.0097
GLU 2660.0094
GLY 2670.0111
ASN 2680.0105
LEU 2690.0104
GLU 2700.0123
LYS 2710.0124
PHE 2720.0113
ASP 2730.0117
LYS 2740.0119
SER 2750.0098
ALA 2760.0087
LEU 2770.0070
GLU 2780.0073
GLY 2790.0056
LEU 2800.0063
CYS 2810.0076
ASN 2820.0034
LEU 2830.0034
THR 2840.0044
ILE 2850.0052
GLU 2860.0064
GLU 2870.0060
PHE 2880.0052
ARG 2890.0048
LEU 2900.0048
ALA 2910.0049
TYR 2920.0070
LEU 2930.0074
ASP 2940.0086
TYR 2950.0094
TYR 2960.0112
LEU 2970.0117
ASP 2980.0140
GLY 2990.0140
ILE 3000.0134
ILE 3010.0159
ASP 3020.0139
LEU 3030.0112
PHE 3040.0108
ASN 3050.0130
CYS 3060.0112
LEU 3070.0082
THR 3080.0102
ASN 3090.0114
VAL 3100.0090
SER 3110.0094
SER 3120.0073
PHE 3130.0064
SER 3140.0054
LEU 3150.0047
VAL 3160.0043
SER 3170.0045
VAL 3180.0056
THR 3190.0077
ILE 3200.0097
GLU 3210.0123
ARG 3220.0120
VAL 3230.0102
LYS 3240.0134
ASP 3250.0136
PHE 3260.0120
SER 3270.0129
TYR 3280.0136
ASN 3290.0141
PHE 3300.0123
GLY 3310.0131
TRP 3320.0073
GLN 3330.0072
HIS 3340.0060
LEU 3350.0049
GLU 3360.0038
LEU 3370.0044
VAL 3380.0038
ASN 3390.0026
CYS 3400.0014
LYS 3410.0024
PHE 3420.0029
GLY 3430.0059
GLN 3440.0045
PHE 3450.0029
PRO 3460.0060
THR 3470.0070
LEU 3480.0074
LYS 3490.0090
LEU 3500.0094
LYS 3510.0110
SER 3520.0093
LEU 3530.0077
LYS 3540.0077
ARG 3550.0066
LEU 3560.0050
THR 3570.0065
PHE 3580.0050
THR 3590.0054
SER 3600.0051
ASN 3610.0035
LYS 3620.0042
GLY 3630.0032
GLY 3640.0028
ASN 3650.0037
ALA 3660.0040
PHE 3670.0054
SER 3680.0056
GLU 3690.0060
VAL 3700.0073
ASP 3710.0084
LEU 3720.0081
PRO 3730.0088
SER 3740.0092
LEU 3750.0079
GLU 3760.0075
PHE 3770.0080
LEU 3780.0076
ASP 3790.0076
LEU 3800.0072
SER 3810.0073
ARG 3820.0085
ASN 3830.0078
GLY 3840.0086
LEU 3850.0087
SER 3860.0094
PHE 3870.0123
LYS 3880.0128
GLY 3890.0123
CYS 3900.0111
CYS 3910.0106
SER 3920.0104
GLN 3930.0105
SER 3940.0120
ASP 3950.0115
PHE 3960.0109
GLY 3970.0120
THR 3980.0104
ILE 3990.0109
SER 4000.0096
LEU 4010.0060
LYS 4020.0083
TYR 4030.0082
LEU 4040.0082
ASP 4050.0083
LEU 4060.0084
SER 4070.0086
PHE 4080.0092
ASN 4090.0100
GLY 4100.0103
VAL 4110.0099
ILE 4120.0116
THR 4130.0112
MET 4140.0098
SER 4150.0109
SER 4160.0112
ASN 4170.0109
PHE 4180.0109
LEU 4190.0127
GLY 4200.0132
LEU 4210.0111
GLU 4220.0114
GLN 4230.0104
LEU 4240.0086
GLU 4250.0062
HIS 4260.0057
LEU 4270.0064
ASP 4280.0066
PHE 4290.0066
GLN 4300.0067
HIS 4310.0076
SER 4320.0098
ASN 4330.0100
LEU 4340.0084
LYS 4350.0086
GLN 4360.0074
MET 4370.0059
SER 4380.0045
GLU 4390.0057
PHE 4400.0055
SER 4410.0057
VAL 4420.0072
PHE 4430.0065
LEU 4440.0084
SER 4450.0106
LEU 4460.0084
ARG 4470.0094
ASN 4480.0082
LEU 4490.0049
ILE 4500.0024
TYR 4510.0016
LEU 4520.0024
ASP 4530.0028
ILE 4540.0033
SER 4550.0041
HIS 4560.0055
THR 4570.0068
HIS 4580.0075
THR 4590.0054
ARG 4600.0065
VAL 4610.0055
ALA 4620.0056
PHE 4630.0030
ASN 4640.0046
GLY 4650.0039
ILE 4660.0020
PHE 4670.0022
ASN 4680.0049
GLY 4690.0064
LEU 4700.0046
SER 4710.0071
SER 4720.0057
LEU 4730.0038
GLU 4740.0052
VAL 4750.0051
LEU 4760.0047
LYS 4770.0048
MET 4780.0052
ALA 4790.0057
GLY 4800.0061
ASN 4810.0059
SER 4820.0063
PHE 4830.0072
GLN 4840.0082
GLU 4850.0086
ASN 4860.0078
PHE 4870.0075
LEU 4880.0070
PRO 4890.0061
ASP 4900.0060
ILE 4910.0049
PHE 4920.0056
THR 4930.0065
GLU 4940.0056
LEU 4950.0054
ARG 4960.0072
ASN 4970.0071
LEU 4980.0070
THR 4990.0088
PHE 5000.0088
LEU 5010.0079
ASP 5020.0073
LEU 5030.0070
SER 5040.0073
GLN 5050.0073
CYS 5060.0069
GLN 5070.0056
LEU 5080.0054
GLU 5090.0054
GLN 5100.0052
LEU 5110.0051
SER 5120.0044
PRO 5130.0042
THR 5140.0048
ALA 5150.0055
PHE 5160.0063
ASN 5170.0061
SER 5180.0069
LEU 5190.0076
SER 5200.0082
SER 5210.0091
LEU 5220.0087
GLN 5230.0102
VAL 5240.0094
LEU 5250.0075
ASN 5260.0078
MET 5270.0053
SER 5280.0060
HIS 5290.0069
ASN 5300.0059
ASN 5310.0057
PHE 5320.0056
PHE 5330.0066
SER 5340.0053
LEU 5350.0033
ASP 5360.0035
THR 5370.0037
PHE 5380.0050
PRO 5390.0031
TYR 5400.0046
LYS 5410.0074
CYS 5420.0075
LEU 5430.0075
ASN 5440.0097
SER 5450.0102
LEU 5460.0081
GLN 5470.0076
VAL 5480.0059
LEU 5490.0035
ASP 5500.0040
TYR 5510.0035
SER 5520.0040
LEU 5530.0057
ASN 5540.0056
HIS 5550.0067
ILE 5560.0058
MET 5570.0069
THR 5580.0073
SER 5590.0073
LYS 5600.0095
LYS 5610.0095
GLN 5620.0112
GLU 5630.0097
LEU 5640.0079
GLN 5650.0094
HIS 5660.0082
PHE 5670.0059
PRO 5680.0074
SER 5690.0091
SER 5700.0087
LEU 5710.0055
ALA 5720.0017
PHE 5730.0008
LEU 5740.0023
ASN 5750.0030
LEU 5760.0046
THR 5770.0050
GLN 5780.0051
ASN 5790.0053
ASP 5800.0053
PHE 5810.0049
ALA 5820.0021
CYS 5830.0030
THR 5840.0050
CYS 5850.0074
GLU 5860.0069
HIS 5870.0022
GLN 5880.0033
SER 5890.0056
PHE 5900.0055
LEU 5910.0040
GLN 5920.0050
TRP 5930.0061
ILE 5940.0061
LYS 5950.0061
ASP 5960.0071
GLN 5970.0069
ARG 5980.0070
GLN 5990.0071
LEU 6000.0068
LEU 6010.0068
VAL 6020.0079
GLU 6030.0082
VAL 6040.0088
GLU 6050.0092
ARG 6060.0082
MET 6070.0094
GLU 6080.0080
CYS 6090.0058
ALA 6100.0082
THR 6110.0077
PRO 6120.0146
SER 6130.0212
ASP 6140.0240
LYS 6150.0172
GLN 6160.0177
GLY 6170.0132
MET 6180.0089
PRO 6190.0072
VAL 6200.0042
LEU 6210.0050
SER 6220.0013
LEU 6230.0018
ASN 6240.0058
ILE 6250.0070
THR 6260.0113
CYS 6270.0098
GLU 10.0517
ALA 20.0630
ALA 30.0490
ALA 40.0278
LYS 50.0412
MET 60.0298
GLN 70.0418
ARG 80.0456
LEU 90.0276
VAL 100.0246
LEU 110.0089
LEU 120.0248
LEU 130.0114
ALA 140.0329
ILE 150.0519
SER 160.0431
LEU 170.0220
LEU 180.0642
LEU 190.0624
TYR 200.0187
GLN 210.0344
ASP 220.0412
LEU 230.0156
PRO 240.0205
VAL 250.0362
ARG 260.0231
SER 270.0151
GLU 280.0273
PHE 290.0237
GLU 300.0106
LEU 310.0096
ASP 320.0084
ARG 330.0047
ILE 340.0061
CYS 350.0089
GLY 360.0045
TYR 370.0048
GLY 380.0066
THR 390.0069
ALA 400.0102
ARG 410.0086
CYS 420.0126
ARG 430.0145
LYS 440.0186
LYS 450.0185
CYS 460.0125
ARG 470.0105
SER 480.0107
GLN 490.0099
GLU 500.0115
TYR 510.0172
ARG 520.0194
ILE 530.0192
GLY 540.0217
ARG 550.0235
CYS 560.0214
PRO 570.0231
ASN 580.0233
THR 590.0241
TYR 600.0221
ALA 610.0171
CYS 620.0153
CYS 630.0132
LEU 640.0112
ARG 650.0094
LYS 660.0126
TRP 670.0121
ASP 680.0083
GLU 690.0056
SER 700.0048
LEU 710.0096
LEU 720.0081
ASN 730.0060
ARG 740.0095
THR 750.0103
LYS 760.0078
PRO 770.0100
GLU 780.0130
ALA 790.0138
ALA 800.0132
ALA 810.0060
LYS 820.0059
LYS 830.0058
GLU 840.0050
MET 850.0052
ASN 860.0040
LEU 870.0046
SER 880.0040
VAL 890.0052
GLY 900.0053
LEU 910.0067
GLY 920.0074
GLY 930.0068
GLY 940.0067
SER 950.0052
ASN 960.0041
LEU 970.0038
SER 980.0037
VAL 990.0049
GLY 1000.0052
LEU 1010.0064
GLY 1020.0076
GLU 1030.0094
ILE 1040.0069
GLY 1050.0082
GLY 1060.0177
GLY 1070.0139
SER 1080.0124
LYS 1090.0068
LEU 1100.0057
LEU 1110.0042
ASP 1120.0036
ILE 1130.0035
ASN 1140.0037
LEU 1150.0049
GLY 1160.0107
ARG 1170.0092
GLY 1180.0026
GLY 1190.0048
GLY 1200.0045
SER 1210.0067
MET 1220.0054
VAL 1230.0052
ASP 1240.0039
LEU 1250.0040
THR 1260.0022
PHE 1270.0025
GLY 1280.0020
GLY 1290.0031
VAL 1300.0041
GLY 1310.0031
GLY 1320.0037
GLY 1330.0034
SER 1340.0031
THR 1350.0037
PHE 1360.0036
THR 1370.0026
PHE 1380.0022
PHE 1390.0016
PRO 1400.0015
LEU 1410.0056
VAL 1420.0056
ILE 1430.0060
GLY 1440.0064
GLY 1450.0074
GLY 1460.0172
SER 1470.0131
ASP 1480.0103
ALA 1490.0035
MET 1500.0044
TYR 1510.0053
LEU 1520.0036
GLY 1530.0043
PHE 1540.0025
ALA 1550.0033
ALA 1560.0039
GLY 1570.0049
GLY 1580.0069
GLY 1590.0098
SER 1600.0113
ALA 1610.0031
GLY 1620.0022
GLY 1630.0022
GLU 1640.0026
ASN 1650.0035
HIS 1660.0025
VAL 1670.0023
ALA 1680.0019
PHE 1690.0021
GLY 1700.0020
PRO 1710.0016
GLY 1720.0018
PRO 1730.0020
GLY 1740.0016
VAL 1750.0013
ASP 1760.0012
LEU 1770.0022
THR 1780.0027
PHE 1790.0041
GLY 1800.0047
GLY 1810.0050
VAL 1820.0052
GLN 1830.0039
PHE 1840.0038
ALA 1850.0037
MET 1860.0038
VAL 1870.0040
ASN 1880.0019
ASN 1890.0049
GLY 1900.0041
PRO 1910.0111
GLY 1920.0044
PRO 1930.0075
GLY 1940.0078
GLU 1950.0044
SER 1960.0188
PHE 1970.0120
THR 1980.0088
ALA 1990.0083
GLN 2000.0034
PRO 2010.0156
ALA 2020.0059
ASP 2030.0125
MET 2040.0197
GLN 2050.0211
ALA 2060.0262
GLY 2070.0236
ILE 2080.0119
LYS 2090.0160
GLY 2100.0354
PRO 2110.0148
GLY 2120.0151
PRO 2130.0133
GLY 2140.0120
GLY 2150.0124
SER 2160.0312
ILE 2170.0213
GLN 2180.0110
VAL 2190.0011
ILE 2200.0136
ASN 2210.0306
GLY 2220.0220
SER 2230.0093
THR 2240.0147
ILE 2250.0235
GLY 2260.0283
THR 2270.0252
GLY 2280.0180
SER 2290.0234
LYS 2300.0222
LYS 2310.0131
THR 2320.0109
ILE 2330.0094
LEU 2340.0098
ILE 2350.0097
TYR 2360.0018
SER 2370.0077
ILE 2380.0098
ILE 2390.0149
GLY 2400.0175
VAL 2410.0165
LYS 2420.0138
LYS 2430.0128
GLY 2440.0119
THR 2450.0120
LEU 2460.0169
ALA 2470.0181
TRP 2480.0142
ALA 2490.0145
ARG 2500.0103
THR 2510.0063
GLY 2520.0086
PHE 2530.0099
SER 2540.0098
PRO 2550.0161
ALA 2560.0329
LYS 2570.0156
LYS 2580.0191
LEU 2590.0119
ASN 2600.0307
ALA 2610.0164
GLY 2620.0223
VAL 2630.0207
VAL 2640.0208
ARG 2650.0261
VAL 2660.0070
PHE 2670.0059
PHE 2680.0076
LEU 2690.0073
ASN 2700.0121
GLN 2710.0046
LYS 2720.0045
LYS 2730.0056
ALA 2740.0019
LYS 2750.0049
ASP 2760.0051
VAL 2770.0054
LEU 2780.0043
ARG 2790.0057
LYS 2800.0077
THR 2810.0116
SER 2820.0079
ARG 2830.0068
PRO 2840.0033
MET 2850.0067
VAL 2860.0065
ASP 2870.0075
LEU 2880.0061
THR 2890.0064
PHE 2900.0037
GLY 2910.0069
GLY 2920.0091

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.