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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 11  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.1115
GLU 270.0097
PRO 280.0095
CYS 290.0084
VAL 300.0082
GLU 310.0082
VAL 320.0073
VAL 330.0075
PRO 340.0085
ASN 350.0082
ILE 360.0071
THR 370.0066
TYR 380.0070
GLN 390.0068
CYS 400.0072
MET 410.0069
GLU 420.0076
LEU 430.0084
ASN 440.0086
PHE 450.0082
TYR 460.0082
LYS 470.0078
ILE 480.0071
PRO 490.0079
ASP 500.0084
ASN 510.0091
LEU 520.0084
PRO 530.0084
PHE 540.0078
SER 550.0075
THR 560.0069
LYS 570.0059
ASN 580.0054
LEU 590.0057
ASP 600.0056
LEU 610.0060
SER 620.0058
PHE 630.0066
ASN 640.0072
PRO 650.0075
LEU 660.0069
ARG 670.0067
HIS 680.0063
LEU 690.0056
GLY 700.0056
SER 710.0051
TYR 720.0054
SER 730.0058
PHE 740.0057
PHE 750.0062
SER 760.0070
PHE 770.0064
PRO 780.0061
GLU 790.0060
LEU 800.0053
GLN 810.0045
VAL 820.0041
LEU 830.0043
ASP 840.0043
LEU 850.0047
SER 860.0047
ARG 870.0056
CYS 880.0060
GLU 890.0064
ILE 900.0057
GLN 910.0058
THR 920.0053
ILE 930.0044
GLU 940.0044
ASP 950.0036
GLY 960.0037
ALA 970.0044
TYR 980.0040
GLN 990.0039
SER 1000.0049
LEU 1010.0044
SER 1020.0041
HIS 1030.0044
LEU 1040.0037
SER 1050.0030
THR 1060.0026
LEU 1070.0028
ILE 1080.0031
LEU 1090.0035
THR 1100.0038
GLY 1110.0048
ASN 1120.0050
PRO 1130.0056
ILE 1140.0049
GLN 1150.0054
SER 1160.0048
LEU 1170.0038
ALA 1180.0033
LEU 1190.0022
GLY 1200.0023
ALA 1210.0029
PHE 1220.0022
SER 1230.0023
GLY 1240.0030
LEU 1250.0027
SER 1260.0029
SER 1270.0031
LEU 1280.0022
GLN 1290.0018
LYS 1300.0013
LEU 1310.0014
VAL 1320.0019
ALA 1330.0026
VAL 1340.0031
GLU 1350.0042
THR 1360.0041
ASN 1370.0048
LEU 1380.0040
ALA 1390.0046
SER 1400.0039
LEU 1410.0029
GLU 1420.0031
ASN 1430.0031
PHE 1440.0023
PRO 1450.0015
ILE 1460.0007
GLY 1470.0006
HIS 1480.0006
LEU 1490.0010
LYS 1500.0017
THR 1510.0021
LEU 1520.0011
LYS 1530.0013
GLU 1540.0003
LEU 1550.0007
ASN 1560.0015
VAL 1570.0024
ALA 1580.0029
HIS 1590.0040
ASN 1600.0042
LEU 1610.0049
ILE 1620.0044
GLN 1630.0052
SER 1640.0049
PHE 1650.0044
LYS 1660.0043
LEU 1670.0034
PRO 1680.0031
GLU 1690.0030
TYR 1700.0019
PHE 1710.0021
SER 1720.0028
ASN 1730.0021
LEU 1740.0017
THR 1750.0027
ASN 1760.0024
LEU 1770.0017
GLU 1780.0019
HIS 1790.0013
LEU 1800.0017
ASP 1810.0019
LEU 1820.0029
SER 1830.0033
SER 1840.0041
ASN 1850.0044
LYS 1860.0053
ILE 1870.0051
GLN 1880.0061
SER 1890.0062
ILE 1900.0057
TYR 1910.0062
CYS 1920.0062
THR 1930.0058
ASP 1940.0050
LEU 1950.0048
ARG 1960.0049
VAL 1970.0039
LEU 1980.0041
HIS 1990.0051
GLN 2000.0046
MET 2010.0042
PRO 2020.0049
LEU 2030.0045
LEU 2040.0036
ASN 2050.0033
LEU 2060.0028
SER 2070.0024
LEU 2080.0027
ASP 2090.0026
LEU 2100.0036
SER 2110.0037
LEU 2120.0043
ASN 2130.0048
PRO 2140.0057
MET 2150.0058
ASN 2160.0068
PHE 2170.0068
ILE 2180.0064
GLN 2190.0069
PRO 2200.0073
GLY 2210.0071
ALA 2220.0062
PHE 2230.0057
LYS 2240.0065
GLU 2250.0063
ILE 2260.0053
ARG 2270.0049
LEU 2280.0040
HIS 2290.0035
LYS 2300.0032
LEU 2310.0035
THR 2320.0033
LEU 2330.0040
ARG 2340.0039
ASN 2350.0046
ASN 2360.0050
PHE 2370.0058
ASP 2380.0065
SER 2390.0069
LEU 2400.0069
ASN 2410.0076
VAL 2420.0070
MET 2430.0064
LYS 2440.0070
THR 2450.0073
CYS 2460.0064
ILE 2470.0062
GLN 2480.0070
GLY 2490.0067
LEU 2500.0060
ALA 2510.0067
GLY 2520.0067
LEU 2530.0057
GLU 2540.0055
VAL 2550.0047
HIS 2560.0043
ARG 2570.0037
LEU 2580.0040
VAL 2590.0035
LEU 2600.0041
GLY 2610.0041
GLU 2620.0041
PHE 2630.0038
ARG 2640.0040
ASN 2650.0044
GLU 2660.0049
GLY 2670.0056
ASN 2680.0055
LEU 2690.0060
GLU 2700.0067
LYS 2710.0067
PHE 2720.0062
ASP 2730.0069
LYS 2740.0070
SER 2750.0073
ALA 2760.0066
LEU 2770.0063
GLU 2780.0071
GLY 2790.0069
LEU 2800.0062
CYS 2810.0069
ASN 2820.0071
LEU 2830.0063
THR 2840.0060
ILE 2850.0053
GLU 2860.0050
GLU 2870.0043
PHE 2880.0042
ARG 2890.0036
LEU 2900.0038
ALA 2910.0032
TYR 2920.0035
LEU 2930.0043
ASP 2940.0047
TYR 2950.0054
TYR 2960.0052
LEU 2970.0053
ASP 2980.0058
GLY 2990.0058
ILE 3000.0057
ILE 3010.0065
ASP 3020.0069
LEU 3030.0063
PHE 3040.0059
ASN 3050.0066
CYS 3060.0065
LEU 3070.0058
THR 3080.0062
ASN 3090.0062
VAL 3100.0054
SER 3110.0051
SER 3120.0043
PHE 3130.0042
SER 3140.0035
LEU 3150.0035
VAL 3160.0029
SER 3170.0030
VAL 3180.0038
THR 3190.0041
ILE 3200.0046
GLU 3210.0048
ARG 3220.0052
VAL 3230.0049
LYS 3240.0055
ASP 3250.0057
PHE 3260.0053
SER 3270.0057
TYR 3280.0062
ASN 3290.0063
PHE 3300.0059
GLY 3310.0060
TRP 3320.0053
GLN 3330.0051
HIS 3340.0043
LEU 3350.0041
GLU 3360.0033
LEU 3370.0032
VAL 3380.0026
ASN 3390.0024
CYS 3400.0031
LYS 3410.0034
PHE 3420.0037
GLY 3430.0041
GLN 3440.0039
PHE 3450.0038
PRO 3460.0043
THR 3470.0047
LEU 3480.0047
LYS 3490.0053
LEU 3500.0053
LYS 3510.0058
SER 3520.0058
LEU 3530.0051
LYS 3540.0049
ARG 3550.0042
LEU 3560.0038
THR 3570.0032
PHE 3580.0030
THR 3590.0024
SER 3600.0020
ASN 3610.0026
LYS 3620.0026
GLY 3630.0031
GLY 3640.0033
ASN 3650.0030
ALA 3660.0032
PHE 3670.0034
SER 3680.0039
GLU 3690.0043
VAL 3700.0044
ASP 3710.0049
LEU 3720.0046
PRO 3730.0048
SER 3740.0049
LEU 3750.0046
GLU 3760.0046
PHE 3770.0040
LEU 3780.0037
ASP 3790.0031
LEU 3800.0029
SER 3810.0024
ARG 3820.0020
ASN 3830.0023
GLY 3840.0021
LEU 3850.0026
SER 3860.0026
PHE 3870.0030
LYS 3880.0031
GLY 3890.0034
CYS 3900.0033
CYS 3910.0036
SER 3920.0041
GLN 3930.0044
SER 3940.0045
ASP 3950.0041
PHE 3960.0042
GLY 3970.0044
THR 3980.0045
ILE 3990.0045
SER 4000.0045
LEU 4010.0044
LYS 4020.0041
TYR 4030.0037
LEU 4040.0034
ASP 4050.0030
LEU 4060.0028
SER 4070.0023
PHE 4080.0020
ASN 4090.0022
GLY 4100.0021
VAL 4110.0022
ILE 4120.0026
THR 4130.0027
MET 4140.0030
SER 4150.0033
SER 4160.0037
ASN 4170.0038
PHE 4180.0039
LEU 4190.0043
GLY 4200.0046
LEU 4210.0043
GLU 4220.0044
GLN 4230.0044
LEU 4240.0040
GLU 4250.0039
HIS 4260.0035
LEU 4270.0032
ASP 4280.0028
PHE 4290.0026
GLN 4300.0022
HIS 4310.0019
SER 4320.0021
ASN 4330.0020
LEU 4340.0023
LYS 4350.0024
GLN 4360.0026
MET 4370.0027
SER 4380.0027
GLU 4390.0029
PHE 4400.0033
SER 4410.0035
VAL 4420.0033
PHE 4430.0036
LEU 4440.0039
SER 4450.0042
LEU 4460.0041
ARG 4470.0044
ASN 4480.0044
LEU 4490.0039
ILE 4500.0038
TYR 4510.0034
LEU 4520.0031
ASP 4530.0027
ILE 4540.0025
SER 4550.0022
HIS 4560.0018
THR 4570.0020
HIS 4580.0018
THR 4590.0021
ARG 4600.0021
VAL 4610.0025
ALA 4620.0026
PHE 4630.0030
ASN 4640.0033
GLY 4650.0035
ILE 4660.0032
PHE 4670.0034
ASN 4680.0038
GLY 4690.0041
LEU 4700.0039
SER 4710.0043
SER 4720.0043
LEU 4730.0038
GLU 4740.0038
VAL 4750.0033
LEU 4760.0031
LYS 4770.0027
MET 4780.0025
ALA 4790.0022
GLY 4800.0018
ASN 4810.0020
SER 4820.0020
PHE 4830.0023
GLN 4840.0023
GLU 4850.0023
ASN 4860.0023
PHE 4870.0027
LEU 4880.0029
PRO 4890.0032
ASP 4900.0035
ILE 4910.0034
PHE 4920.0036
THR 4930.0040
GLU 4940.0041
LEU 4950.0039
ARG 4960.0043
ASN 4970.0042
LEU 4980.0038
THR 4990.0038
PHE 5000.0033
LEU 5010.0031
ASP 5020.0027
LEU 5030.0026
SER 5040.0022
GLN 5050.0019
CYS 5060.0021
GLN 5070.0020
LEU 5080.0024
GLU 5090.0025
GLN 5100.0029
LEU 5110.0031
SER 5120.0034
PRO 5130.0038
THR 5140.0039
ALA 5150.0036
PHE 5160.0038
ASN 5170.0041
SER 5180.0043
LEU 5190.0041
SER 5200.0044
SER 5210.0043
LEU 5220.0039
GLN 5230.0038
VAL 5240.0034
LEU 5250.0032
ASN 5260.0028
MET 5270.0027
SER 5280.0024
HIS 5290.0020
ASN 5300.0022
ASN 5310.0022
PHE 5320.0026
PHE 5330.0028
SER 5340.0032
LEU 5350.0033
ASP 5360.0036
THR 5370.0038
PHE 5380.0040
PRO 5390.0038
TYR 5400.0039
LYS 5410.0043
CYS 5420.0044
LEU 5430.0042
ASN 5440.0045
SER 5450.0043
LEU 5460.0039
GLN 5470.0038
VAL 5480.0034
LEU 5490.0032
ASP 5500.0029
TYR 5510.0027
SER 5520.0024
LEU 5530.0022
ASN 5540.0023
HIS 5550.0025
ILE 5560.0028
MET 5570.0030
THR 5580.0034
SER 5590.0036
LYS 5600.0037
LYS 5610.0040
GLN 5620.0042
GLU 5630.0043
LEU 5640.0042
GLN 5650.0045
HIS 5660.0044
PHE 5670.0042
PRO 5680.0044
SER 5690.0045
SER 5700.0044
LEU 5710.0040
ALA 5720.0039
PHE 5730.0035
LEU 5740.0033
ASN 5750.0029
LEU 5760.0028
THR 5770.0025
GLN 5780.0023
ASN 5790.0025
ASP 5800.0026
PHE 5810.0030
ALA 5820.0032
CYS 5830.0034
THR 5840.0038
CYS 5850.0042
GLU 5860.0041
HIS 5870.0039
GLN 5880.0041
SER 5890.0043
PHE 5900.0039
LEU 5910.0038
GLN 5920.0041
TRP 5930.0041
ILE 5940.0037
LYS 5950.0039
ASP 5960.0042
GLN 5970.0040
ARG 5980.0037
GLN 5990.0038
LEU 6000.0037
LEU 6010.0033
VAL 6020.0031
GLU 6030.0027
VAL 6040.0029
GLU 6050.0026
ARG 6060.0024
MET 6070.0027
GLU 6080.0027
CYS 6090.0029
ALA 6100.0027
THR 6110.0030
PRO 6120.0033
SER 6130.0031
ASP 6140.0033
LYS 6150.0032
GLN 6160.0028
GLY 6170.0026
MET 6180.0029
PRO 6190.0029
VAL 6200.0032
LEU 6210.0034
SER 6220.0035
LEU 6230.0036
ASN 6240.0040
ILE 6250.0043
THR 6260.0046
CYS 6270.0047
GLU 10.1115
ALA 20.1046
ALA 30.0984
ALA 40.0907
LYS 50.0843
MET 60.0772
GLN 70.0712
ARG 80.0643
LEU 90.0582
VAL 100.0516
LEU 110.0454
LEU 120.0401
LEU 130.0334
ALA 140.0292
ILE 150.0225
SER 160.0189
LEU 170.0145
LEU 180.0122
LEU 190.0078
TYR 200.0048
GLN 210.0032
ASP 220.0026
LEU 230.0035
PRO 240.0069
VAL 250.0061
ARG 260.0072
SER 270.0063
GLU 280.0062
PHE 290.0059
GLU 300.0052
LEU 310.0048
ASP 320.0048
ARG 330.0041
ILE 340.0034
CYS 350.0031
GLY 360.0025
TYR 370.0025
GLY 380.0025
THR 390.0019
ALA 400.0023
ARG 410.0029
CYS 420.0038
ARG 430.0040
LYS 440.0047
LYS 450.0042
CYS 460.0034
ARG 470.0027
SER 480.0025
GLN 490.0017
GLU 500.0022
TYR 510.0029
ARG 520.0035
ILE 530.0034
GLY 540.0041
ARG 550.0047
CYS 560.0047
PRO 570.0055
ASN 580.0058
THR 590.0058
TYR 600.0050
ALA 610.0044
CYS 620.0036
CYS 630.0028
LEU 640.0020
ARG 650.0013
LYS 660.0016
TRP 670.0014
ASP 680.0014
GLU 690.0024
SER 700.0024
LEU 710.0025
LEU 720.0032
ASN 730.0037
ARG 740.0038
THR 750.0043
LYS 760.0051
PRO 770.0060
GLU 780.0064
ALA 790.0075
ALA 800.0075
ALA 810.0078
LYS 820.0072
LYS 830.0064
GLU 840.0058
MET 850.0050
ASN 860.0044
LEU 870.0036
SER 880.0031
VAL 890.0026
GLY 900.0023
LEU 910.0026
GLY 920.0025
GLY 930.0030
GLY 940.0028
SER 950.0033
ASN 960.0033
LEU 970.0036
SER 980.0040
VAL 990.0042
GLY 1000.0050
LEU 1010.0052
GLY 1020.0061
GLU 1030.0064
ILE 1040.0065
GLY 1050.0068
GLY 1060.0058
GLY 1070.0050
SER 1080.0040
LYS 1090.0040
LEU 1100.0032
LEU 1110.0032
ASP 1120.0033
ILE 1130.0031
ASN 1140.0037
LEU 1150.0034
GLY 1160.0041
ARG 1170.0046
GLY 1180.0043
GLY 1190.0040
GLY 1200.0034
SER 1210.0027
MET 1220.0021
VAL 1230.0019
ASP 1240.0019
LEU 1250.0023
THR 1260.0030
PHE 1270.0037
GLY 1280.0045
GLY 1290.0052
VAL 1300.0058
GLY 1310.0068
GLY 1320.0066
GLY 1330.0062
SER 1340.0052
THR 1350.0047
PHE 1360.0037
THR 1370.0033
PHE 1380.0027
PHE 1390.0025
PRO 1400.0025
LEU 1410.0022
VAL 1420.0028
ILE 1430.0030
GLY 1440.0038
GLY 1450.0043
GLY 1460.0044
SER 1470.0039
ASP 1480.0035
ALA 1490.0029
MET 1500.0022
TYR 1510.0020
LEU 1520.0020
GLY 1530.0021
PHE 1540.0027
ALA 1550.0032
ALA 1560.0042
GLY 1570.0047
GLY 1580.0057
GLY 1590.0061
SER 1600.0067
ALA 1610.0062
GLY 1620.0061
GLY 1630.0054
GLU 1640.0045
ASN 1650.0037
HIS 1660.0030
VAL 1670.0025
ALA 1680.0023
PHE 1690.0023
GLY 1700.0029
PRO 1710.0036
GLY 1720.0043
PRO 1730.0044
GLY 1740.0040
VAL 1750.0032
ASP 1760.0034
LEU 1770.0034
THR 1780.0039
PHE 1790.0045
GLY 1800.0053
GLY 1810.0054
VAL 1820.0055
GLN 1830.0049
PHE 1840.0047
ALA 1850.0048
MET 1860.0046
VAL 1870.0054
ASN 1880.0052
ASN 1890.0055
GLY 1900.0058
PRO 1910.0076
GLY 1920.0095
PRO 1930.0110
GLY 1940.0122
GLU 1950.0107
SER 1960.0113
PHE 1970.0104
THR 1980.0110
ALA 1990.0105
GLN 2000.0108
PRO 2010.0111
ALA 2020.0111
ASP 2030.0101
MET 2040.0099
GLN 2050.0103
ALA 2060.0094
GLY 2070.0094
ILE 2080.0073
LYS 2090.0066
GLY 2100.0072
PRO 2110.0055
GLY 2120.0069
PRO 2130.0092
GLY 2140.0090
GLY 2150.0064
SER 2160.0059
ILE 2170.0054
GLN 2180.0041
VAL 2190.0037
ILE 2200.0025
ASN 2210.0022
GLY 2220.0023
SER 2230.0022
THR 2240.0022
ILE 2250.0024
GLY 2260.0029
THR 2270.0034
GLY 2280.0037
SER 2290.0039
LYS 2300.0035
LYS 2310.0028
THR 2320.0025
ILE 2330.0022
LEU 2340.0018
ILE 2350.0015
TYR 2360.0011
SER 2370.0010
ILE 2380.0009
ILE 2390.0009
GLY 2400.0010
VAL 2410.0014
LYS 2420.0016
LYS 2430.0019
GLY 2440.0018
THR 2450.0015
LEU 2460.0012
ALA 2470.0012
TRP 2480.0012
ALA 2490.0014
ARG 2500.0016
THR 2510.0018
GLY 2520.0022
PHE 2530.0023
SER 2540.0027
PRO 2550.0029
ALA 2560.0031
LYS 2570.0035
LYS 2580.0038
LEU 2590.0036
ASN 2600.0040
ALA 2610.0042
GLY 2620.0037
VAL 2630.0032
VAL 2640.0033
ARG 2650.0026
VAL 2660.0020
PHE 2670.0015
PHE 2680.0010
LEU 2690.0007
ASN 2700.0004
GLN 2710.0010
LYS 2720.0014
LYS 2730.0012
ALA 2740.0012
LYS 2750.0018
ASP 2760.0023
VAL 2770.0023
LEU 2780.0021
ARG 2790.0025
LYS 2800.0029
THR 2810.0031
SER 2820.0039
ARG 2830.0081
PRO 2840.0115
MET 2850.0167
VAL 2860.0303
ASP 2870.0459
LEU 2880.0509
THR 2890.0691
PHE 2900.0831
GLY 2910.1036
GLY 2920.1103

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.