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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 12  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0823
GLU 270.0131
PRO 280.0120
CYS 290.0114
VAL 300.0115
GLU 310.0124
VAL 320.0117
VAL 330.0125
PRO 340.0137
ASN 350.0136
ILE 360.0123
THR 370.0111
TYR 380.0109
GLN 390.0098
CYS 400.0096
MET 410.0082
GLU 420.0078
LEU 430.0090
ASN 440.0082
PHE 450.0091
TYR 460.0089
LYS 470.0100
ILE 480.0104
PRO 490.0114
ASP 500.0129
ASN 510.0136
LEU 520.0131
PRO 530.0139
PHE 540.0139
SER 550.0135
THR 560.0121
LYS 570.0110
ASN 580.0098
LEU 590.0095
ASP 600.0084
LEU 610.0081
SER 620.0068
PHE 630.0061
ASN 640.0071
PRO 650.0068
LEU 660.0077
ARG 670.0071
HIS 680.0083
LEU 690.0091
GLY 700.0105
SER 710.0116
TYR 720.0121
SER 730.0110
PHE 740.0111
PHE 750.0127
SER 760.0129
PHE 770.0122
PRO 780.0127
GLU 790.0122
LEU 800.0108
GLN 810.0096
VAL 820.0084
LEU 830.0081
ASP 840.0070
LEU 850.0067
SER 860.0053
ARG 870.0047
CYS 880.0060
GLU 890.0053
ILE 900.0063
GLN 910.0064
THR 920.0078
ILE 930.0085
GLU 940.0099
ASP 950.0109
GLY 960.0113
ALA 970.0103
TYR 980.0102
GLN 990.0115
SER 1000.0121
LEU 1010.0110
SER 1020.0113
HIS 1030.0107
LEU 1040.0094
SER 1050.0083
THR 1060.0071
LEU 1070.0070
ILE 1080.0058
LEU 1090.0054
THR 1100.0041
GLY 1110.0035
ASN 1120.0045
PRO 1130.0044
ILE 1140.0057
GLN 1150.0065
SER 1160.0079
LEU 1170.0080
ALA 1180.0095
LEU 1190.0100
GLY 1200.0106
ALA 1210.0093
PHE 1220.0090
SER 1230.0105
GLY 1240.0110
LEU 1250.0097
SER 1260.0103
SER 1270.0093
LEU 1280.0081
GLN 1290.0070
LYS 1300.0060
LEU 1310.0058
VAL 1320.0047
ALA 1330.0046
VAL 1340.0032
GLU 1350.0028
THR 1360.0042
ASN 1370.0042
LEU 1380.0050
ALA 1390.0057
SER 1400.0063
LEU 1410.0064
GLU 1420.0078
ASN 1430.0079
PHE 1440.0072
PRO 1450.0083
ILE 1460.0078
GLY 1470.0086
HIS 1480.0094
LEU 1490.0085
LYS 1500.0085
THR 1510.0081
LEU 1520.0068
LYS 1530.0058
GLU 1540.0048
LEU 1550.0047
ASN 1560.0037
VAL 1570.0037
ALA 1580.0025
HIS 1590.0022
ASN 1600.0034
LEU 1610.0043
ILE 1620.0049
GLN 1630.0056
SER 1640.0061
PHE 1650.0056
LYS 1660.0067
LEU 1670.0067
PRO 1680.0078
GLU 1690.0086
TYR 1700.0084
PHE 1710.0073
SER 1720.0080
ASN 1730.0085
LEU 1740.0074
THR 1750.0073
ASN 1760.0067
LEU 1770.0056
GLU 1780.0045
HIS 1790.0037
LEU 1800.0038
ASP 1810.0029
LEU 1820.0032
SER 1830.0022
SER 1840.0022
ASN 1850.0033
LYS 1860.0043
ILE 1870.0048
GLN 1880.0055
SER 1890.0059
ILE 1900.0058
TYR 1910.0068
CYS 1920.0072
THR 1930.0079
ASP 1940.0069
LEU 1950.0064
ARG 1960.0075
VAL 1970.0073
LEU 1980.0063
HIS 1990.0069
GLN 2000.0077
MET 2010.0070
PRO 2020.0062
LEU 2030.0060
LEU 2040.0055
ASN 2050.0045
LEU 2060.0039
SER 2070.0028
LEU 2080.0029
ASP 2090.0021
LEU 2100.0027
SER 2110.0020
LEU 2120.0025
ASN 2130.0034
PRO 2140.0044
MET 2150.0047
ASN 2160.0057
PHE 2170.0060
ILE 2180.0057
GLN 2190.0066
PRO 2200.0065
GLY 2210.0065
ALA 2220.0061
PHE 2230.0051
LYS 2240.0055
GLU 2250.0053
ILE 2260.0048
ARG 2270.0038
LEU 2280.0032
HIS 2290.0026
LYS 2300.0019
LEU 2310.0021
THR 2320.0016
LEU 2330.0024
ARG 2340.0022
ASN 2350.0030
ASN 2360.0035
PHE 2370.0043
ASP 2380.0051
SER 2390.0055
LEU 2400.0054
ASN 2410.0060
VAL 2420.0056
MET 2430.0047
LYS 2440.0052
THR 2450.0057
CYS 2460.0049
ILE 2470.0044
GLN 2480.0052
GLY 2490.0053
LEU 2500.0044
ALA 2510.0047
GLY 2520.0044
LEU 2530.0037
GLU 2540.0030
VAL 2550.0022
HIS 2560.0015
ARG 2570.0009
LEU 2580.0013
VAL 2590.0012
LEU 2600.0021
GLY 2610.0025
GLU 2620.0028
PHE 2630.0026
ARG 2640.0032
ASN 2650.0032
GLU 2660.0034
GLY 2670.0043
ASN 2680.0044
LEU 2690.0048
GLU 2700.0056
LYS 2710.0056
PHE 2720.0049
ASP 2730.0053
LYS 2740.0049
SER 2750.0049
ALA 2760.0045
LEU 2770.0038
GLU 2780.0042
GLY 2790.0041
LEU 2800.0032
CYS 2810.0033
ASN 2820.0039
LEU 2830.0031
THR 2840.0023
ILE 2850.0015
GLU 2860.0007
GLU 2870.0005
PHE 2880.0011
ARG 2890.0014
LEU 2900.0022
ALA 2910.0021
TYR 2920.0028
LEU 2930.0035
ASP 2940.0043
TYR 2950.0048
TYR 2960.0051
LEU 2970.0048
ASP 2980.0054
GLY 2990.0049
ILE 3000.0042
ILE 3010.0044
ASP 3020.0042
LEU 3030.0040
PHE 3040.0032
ASN 3050.0032
CYS 3060.0028
LEU 3070.0021
THR 3080.0022
ASN 3090.0014
VAL 3100.0011
SER 3110.0011
SER 3120.0014
PHE 3130.0018
SER 3140.0020
LEU 3150.0026
VAL 3160.0026
SER 3170.0032
VAL 3180.0036
THR 3190.0044
ILE 3200.0045
GLU 3210.0052
ARG 3220.0052
VAL 3230.0047
LYS 3240.0049
ASP 3250.0043
PHE 3260.0038
SER 3270.0043
TYR 3280.0038
ASN 3290.0033
PHE 3300.0027
GLY 3310.0022
TRP 3320.0022
GLN 3330.0023
HIS 3340.0024
LEU 3350.0027
GLU 3360.0026
LEU 3370.0031
VAL 3380.0031
ASN 3390.0035
CYS 3400.0038
LYS 3410.0045
PHE 3420.0047
GLY 3430.0053
GLN 3440.0053
PHE 3450.0049
PRO 3460.0044
THR 3470.0047
LEU 3480.0041
LYS 3490.0041
LEU 3500.0036
LYS 3510.0037
SER 3520.0032
LEU 3530.0033
LYS 3540.0035
ARG 3550.0033
LEU 3560.0035
THR 3570.0034
PHE 3580.0037
THR 3590.0036
SER 3600.0038
ASN 3610.0041
LYS 3620.0045
GLY 3630.0048
GLY 3640.0050
ASN 3650.0049
ALA 3660.0052
PHE 3670.0050
SER 3680.0052
GLU 3690.0052
VAL 3700.0047
ASP 3710.0047
LEU 3720.0044
PRO 3730.0045
SER 3740.0042
LEU 3750.0042
GLU 3760.0042
PHE 3770.0040
LEU 3780.0041
ASP 3790.0039
LEU 3800.0042
SER 3810.0041
ARG 3820.0042
ASN 3830.0043
GLY 3840.0045
LEU 3850.0046
SER 3860.0050
PHE 3870.0050
LYS 3880.0054
GLY 3890.0056
CYS 3900.0053
CYS 3910.0053
SER 3920.0057
GLN 3930.0056
SER 3940.0057
ASP 3950.0054
PHE 3960.0049
GLY 3970.0052
THR 3980.0051
ILE 3990.0054
SER 4000.0051
LEU 4010.0049
LYS 4020.0048
TYR 4030.0044
LEU 4040.0044
ASP 4050.0042
LEU 4060.0043
SER 4070.0042
PHE 4080.0042
ASN 4090.0043
GLY 4100.0046
VAL 4110.0048
ILE 4120.0049
THR 4130.0052
MET 4140.0053
SER 4150.0057
SER 4160.0057
ASN 4170.0057
PHE 4180.0055
LEU 4190.0060
GLY 4200.0060
LEU 4210.0055
GLU 4220.0057
GLN 4230.0055
LEU 4240.0051
GLU 4250.0049
HIS 4260.0045
LEU 4270.0045
ASP 4280.0042
PHE 4290.0042
GLN 4300.0041
HIS 4310.0042
SER 4320.0043
ASN 4330.0045
LEU 4340.0046
LYS 4350.0049
GLN 4360.0052
MET 4370.0050
SER 4380.0052
GLU 4390.0057
PHE 4400.0056
SER 4410.0053
VAL 4420.0052
PHE 4430.0050
LEU 4440.0055
SER 4450.0057
LEU 4460.0053
ARG 4470.0055
ASN 4480.0055
LEU 4490.0050
ILE 4500.0048
TYR 4510.0045
LEU 4520.0044
ASP 4530.0042
ILE 4540.0041
SER 4550.0042
HIS 4560.0042
THR 4570.0042
HIS 4580.0045
THR 4590.0044
ARG 4600.0047
VAL 4610.0046
ALA 4620.0052
PHE 4630.0052
ASN 4640.0049
GLY 4650.0050
ILE 4660.0048
PHE 4670.0046
ASN 4680.0050
GLY 4690.0053
LEU 4700.0049
SER 4710.0052
SER 4720.0053
LEU 4730.0048
GLU 4740.0049
VAL 4750.0047
LEU 4760.0043
LYS 4770.0043
MET 4780.0042
ALA 4790.0044
GLY 4800.0045
ASN 4810.0044
SER 4820.0048
PHE 4830.0048
GLN 4840.0052
GLU 4850.0057
ASN 4860.0054
PHE 4870.0051
LEU 4880.0046
PRO 4890.0045
ASP 4900.0043
ILE 4910.0043
PHE 4920.0042
THR 4930.0044
GLU 4940.0047
LEU 4950.0046
ARG 4960.0048
ASN 4970.0051
LEU 4980.0048
THR 4990.0051
PHE 5000.0050
LEU 5010.0045
ASP 5020.0047
LEU 5030.0045
SER 5040.0049
GLN 5050.0051
CYS 5060.0048
GLN 5070.0054
LEU 5080.0052
GLU 5090.0058
GLN 5100.0054
LEU 5110.0048
SER 5120.0046
PRO 5130.0045
THR 5140.0042
ALA 5150.0042
PHE 5160.0042
ASN 5170.0042
SER 5180.0043
LEU 5190.0045
SER 5200.0050
SER 5210.0054
LEU 5220.0051
GLN 5230.0058
VAL 5240.0056
LEU 5250.0052
ASN 5260.0053
MET 5270.0053
SER 5280.0058
HIS 5290.0059
ASN 5300.0057
ASN 5310.0062
PHE 5320.0063
PHE 5330.0072
SER 5340.0070
LEU 5350.0066
ASP 5360.0060
THR 5370.0058
PHE 5380.0052
PRO 5390.0047
TYR 5400.0050
LYS 5410.0051
CYS 5420.0047
LEU 5430.0051
ASN 5440.0056
SER 5450.0060
LEU 5460.0059
GLN 5470.0067
VAL 5480.0066
LEU 5490.0061
ASP 5500.0063
TYR 5510.0064
SER 5520.0070
LEU 5530.0071
ASN 5540.0068
HIS 5550.0075
ILE 5560.0076
MET 5570.0085
THR 5580.0082
SER 5590.0075
LYS 5600.0074
LYS 5610.0067
GLN 5620.0071
GLU 5630.0063
LEU 5640.0069
GLN 5650.0068
HIS 5660.0060
PHE 5670.0062
PRO 5680.0062
SER 5690.0070
SER 5700.0070
LEU 5710.0070
ALA 5720.0079
PHE 5730.0077
LEU 5740.0074
ASN 5750.0075
LEU 5760.0077
THR 5770.0082
GLN 5780.0083
ASN 5790.0081
ASP 5800.0088
PHE 5810.0092
ALA 5820.0099
CYS 5830.0108
THR 5840.0112
CYS 5850.0115
GLU 5860.0106
HIS 5870.0098
GLN 5880.0103
SER 5890.0094
PHE 5900.0088
LEU 5910.0098
GLN 5920.0100
TRP 5930.0090
ILE 5940.0092
LYS 5950.0102
ASP 5960.0098
GLN 5970.0091
ARG 5980.0098
GLN 5990.0096
LEU 6000.0086
LEU 6010.0087
VAL 6020.0088
GLU 6030.0094
VAL 6040.0102
GLU 6050.0106
ARG 6060.0096
MET 6070.0095
GLU 6080.0102
CYS 6090.0105
ALA 6100.0103
THR 6110.0107
PRO 6120.0118
SER 6130.0125
ASP 6140.0132
LYS 6150.0124
GLN 6160.0117
GLY 6170.0114
MET 6180.0118
PRO 6190.0112
VAL 6200.0107
LEU 6210.0111
SER 6220.0122
LEU 6230.0121
ASN 6240.0128
ILE 6250.0121
THR 6260.0131
CYS 6270.0131
GLU 10.0403
ALA 20.0383
ALA 30.0361
ALA 40.0325
LYS 50.0303
MET 60.0283
GLN 70.0258
ARG 80.0227
LEU 90.0208
VAL 100.0190
LEU 110.0159
LEU 120.0138
LEU 130.0120
ALA 140.0110
ILE 150.0078
SER 160.0066
LEU 170.0061
LEU 180.0053
LEU 190.0037
TYR 200.0035
GLN 210.0043
ASP 220.0042
LEU 230.0042
PRO 240.0047
VAL 250.0045
ARG 260.0036
SER 270.0030
GLU 280.0034
PHE 290.0026
GLU 300.0021
LEU 310.0027
ASP 320.0032
ARG 330.0026
ILE 340.0028
CYS 350.0036
GLY 360.0034
TYR 370.0033
GLY 380.0028
THR 390.0026
ALA 400.0028
ARG 410.0032
CYS 420.0037
ARG 430.0042
LYS 440.0051
LYS 450.0057
CYS 460.0056
ARG 470.0054
SER 480.0061
GLN 490.0052
GLU 500.0051
TYR 510.0058
ARG 520.0060
ILE 530.0060
GLY 540.0060
ARG 550.0056
CYS 560.0049
PRO 570.0049
ASN 580.0046
THR 590.0055
TYR 600.0051
ALA 610.0053
CYS 620.0048
CYS 630.0046
LEU 640.0043
ARG 650.0040
LYS 660.0050
TRP 670.0044
ASP 680.0039
GLU 690.0045
SER 700.0033
LEU 710.0028
LEU 720.0040
ASN 730.0035
ARG 740.0022
THR 750.0032
LYS 760.0041
PRO 770.0043
GLU 780.0028
ALA 790.0043
ALA 800.0059
ALA 810.0139
LYS 820.0126
LYS 830.0128
GLU 840.0134
MET 850.0127
ASN 860.0136
LEU 870.0121
SER 880.0131
VAL 890.0119
GLY 900.0128
LEU 910.0123
GLY 920.0129
GLY 930.0148
GLY 940.0161
SER 950.0151
ASN 960.0149
LEU 970.0136
SER 980.0141
VAL 990.0128
GLY 1000.0136
LEU 1010.0119
GLY 1020.0122
GLU 1030.0105
ILE 1040.0097
GLY 1050.0081
GLY 1060.0081
GLY 1070.0080
SER 1080.0069
LYS 1090.0079
LEU 1100.0072
LEU 1110.0081
ASP 1120.0083
ILE 1130.0088
ASN 1140.0091
LEU 1150.0086
GLY 1160.0096
ARG 1170.0085
GLY 1180.0093
GLY 1190.0082
GLY 1200.0088
SER 1210.0094
MET 1220.0097
VAL 1230.0096
ASP 1240.0107
LEU 1250.0100
THR 1260.0116
PHE 1270.0112
GLY 1280.0128
GLY 1290.0127
VAL 1300.0122
GLY 1310.0133
GLY 1320.0115
GLY 1330.0104
SER 1340.0089
THR 1350.0081
PHE 1360.0071
THR 1370.0059
PHE 1380.0056
PHE 1390.0045
PRO 1400.0045
LEU 1410.0030
VAL 1420.0037
ILE 1430.0028
GLY 1440.0038
GLY 1450.0034
GLY 1460.0033
SER 1470.0040
ASP 1480.0045
ALA 1490.0047
MET 1500.0043
TYR 1510.0041
LEU 1520.0048
GLY 1530.0041
PHE 1540.0051
ALA 1550.0043
ALA 1560.0057
GLY 1570.0059
GLY 1580.0070
GLY 1590.0088
SER 1600.0108
ALA 1610.0118
GLY 1620.0131
GLY 1630.0134
GLU 1640.0127
ASN 1650.0112
HIS 1660.0109
VAL 1670.0092
ALA 1680.0096
PHE 1690.0080
GLY 1700.0087
PRO 1710.0076
GLY 1720.0083
PRO 1730.0074
GLY 1740.0084
VAL 1750.0077
ASP 1760.0097
LEU 1770.0095
THR 1780.0114
PHE 1790.0114
GLY 1800.0134
GLY 1810.0148
VAL 1820.0138
GLN 1830.0129
PHE 1840.0113
ALA 1850.0113
MET 1860.0095
VAL 1870.0124
ASN 1880.0122
ASN 1890.0147
GLY 1900.0160
PRO 1910.0343
GLY 1920.0504
PRO 1930.0663
GLY 1940.0823
GLU 1950.0705
SER 1960.0753
PHE 1970.0650
THR 1980.0697
ALA 1990.0609
GLN 2000.0579
PRO 2010.0553
ALA 2020.0479
ASP 2030.0345
MET 2040.0310
GLN 2050.0275
ALA 2060.0126
GLY 2070.0254
ILE 2080.0250
LYS 2090.0432
GLY 2100.0537
PRO 2110.0564
GLY 2120.0763
PRO 2130.0789
GLY 2140.0663
GLY 2150.0495
SER 2160.0346
ILE 2170.0235
GLN 2180.0174
VAL 2190.0068
ILE 2200.0055
ASN 2210.0089
GLY 2220.0081
SER 2230.0102
THR 2240.0088
ILE 2250.0092
GLY 2260.0094
THR 2270.0094
GLY 2280.0098
SER 2290.0093
LYS 2300.0092
LYS 2310.0074
THR 2320.0073
ILE 2330.0058
LEU 2340.0057
ILE 2350.0049
TYR 2360.0046
SER 2370.0046
ILE 2380.0043
ILE 2390.0046
GLY 2400.0045
VAL 2410.0044
LYS 2420.0044
LYS 2430.0046
GLY 2440.0048
THR 2450.0047
LEU 2460.0042
ALA 2470.0045
TRP 2480.0046
ALA 2490.0052
ARG 2500.0056
THR 2510.0061
GLY 2520.0073
PHE 2530.0081
SER 2540.0095
PRO 2550.0101
ALA 2560.0107
LYS 2570.0114
LYS 2580.0108
LEU 2590.0108
ASN 2600.0106
ALA 2610.0095
GLY 2620.0089
VAL 2630.0085
VAL 2640.0072
ARG 2650.0072
VAL 2660.0057
PHE 2670.0057
PHE 2680.0056
LEU 2690.0059
ASN 2700.0052
GLN 2710.0049
LYS 2720.0053
LYS 2730.0059
ALA 2740.0059
LYS 2750.0059
ASP 2760.0067
VAL 2770.0069
LEU 2780.0069
ARG 2790.0076
LYS 2800.0081
THR 2810.0089
SER 2820.0087
ARG 2830.0050
PRO 2840.0045
MET 2850.0052
VAL 2860.0116
ASP 2870.0216
LEU 2880.0250
THR 2890.0363
PHE 2900.0449
GLY 2910.0571
GLY 2920.0617

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.