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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 13  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0783
GLU 270.0188
PRO 280.0179
CYS 290.0168
VAL 300.0165
GLU 310.0168
VAL 320.0158
VAL 330.0161
PRO 340.0174
ASN 350.0172
ILE 360.0156
THR 370.0149
TYR 380.0153
GLN 390.0147
CYS 400.0151
MET 410.0139
GLU 420.0141
LEU 430.0156
ASN 440.0155
PHE 450.0159
TYR 460.0162
LYS 470.0165
ILE 480.0160
PRO 490.0170
ASP 500.0181
ASN 510.0188
LEU 520.0177
PRO 530.0178
PHE 540.0172
SER 550.0164
THR 560.0156
LYS 570.0141
ASN 580.0135
LEU 590.0138
ASP 600.0132
LEU 610.0136
SER 620.0125
PHE 630.0126
ASN 640.0138
PRO 650.0141
LEU 660.0144
ARG 670.0139
HIS 680.0145
LEU 690.0144
GLY 700.0155
SER 710.0156
TYR 720.0158
SER 730.0156
PHE 740.0151
PHE 750.0162
SER 760.0168
PHE 770.0157
PRO 780.0153
GLU 790.0146
LEU 800.0138
GLN 810.0124
VAL 820.0118
LEU 830.0121
ASP 840.0116
LEU 850.0118
SER 860.0109
ARG 870.0111
CYS 880.0124
GLU 890.0122
ILE 900.0124
GLN 910.0125
THR 920.0132
ILE 930.0131
GLU 940.0141
ASP 950.0141
GLY 960.0142
ALA 970.0141
TYR 980.0134
GLN 990.0140
SER 1000.0146
LEU 1010.0134
SER 1020.0128
HIS 1030.0124
LEU 1040.0118
SER 1050.0105
THR 1060.0101
LEU 1070.0105
ILE 1080.0101
LEU 1090.0102
THR 1100.0093
GLY 1110.0095
ASN 1120.0106
PRO 1130.0106
ILE 1140.0110
GLN 1150.0117
SER 1160.0125
LEU 1170.0119
ALA 1180.0126
LEU 1190.0122
GLY 1200.0128
ALA 1210.0124
PHE 1220.0115
SER 1230.0122
GLY 1240.0125
LEU 1250.0115
SER 1260.0111
SER 1270.0104
LEU 1280.0098
GLN 1290.0087
LYS 1300.0085
LEU 1310.0087
VAL 1320.0085
ALA 1330.0086
VAL 1340.0078
GLU 1350.0081
THR 1360.0090
ASN 1370.0088
LEU 1380.0086
ALA 1390.0084
SER 1400.0081
LEU 1410.0079
GLU 1420.0088
ASN 1430.0097
PHE 1440.0094
PRO 1450.0100
ILE 1460.0093
GLY 1470.0090
HIS 1480.0097
LEU 1490.0093
LYS 1500.0084
THR 1510.0085
LEU 1520.0079
LYS 1530.0070
GLU 1540.0069
LEU 1550.0070
ASN 1560.0069
VAL 1570.0070
ALA 1580.0063
HIS 1590.0065
ASN 1600.0070
LEU 1610.0071
ILE 1620.0067
GLN 1630.0064
SER 1640.0062
PHE 1650.0054
LYS 1660.0062
LEU 1670.0064
PRO 1680.0075
GLU 1690.0077
TYR 1700.0081
PHE 1710.0070
SER 1720.0068
ASN 1730.0076
LEU 1740.0071
THR 1750.0064
ASN 1760.0065
LEU 1770.0061
GLU 1780.0054
HIS 1790.0054
LEU 1800.0054
ASP 1810.0055
LEU 1820.0052
SER 1830.0048
SER 1840.0050
ASN 1850.0055
LYS 1860.0054
ILE 1870.0049
GLN 1880.0045
SER 1890.0045
ILE 1900.0044
TYR 1910.0049
CYS 1920.0049
THR 1930.0059
ASP 1940.0056
LEU 1950.0049
ARG 1960.0057
VAL 1970.0058
LEU 1980.0047
HIS 1990.0045
GLN 2000.0053
MET 2010.0048
PRO 2020.0036
LEU 2030.0039
LEU 2040.0044
ASN 2050.0041
LEU 2060.0041
SER 2070.0040
LEU 2080.0039
ASP 2090.0040
LEU 2100.0036
SER 2110.0034
LEU 2120.0036
ASN 2130.0038
PRO 2140.0034
MET 2150.0031
ASN 2160.0033
PHE 2170.0035
ILE 2180.0033
GLN 2190.0040
PRO 2200.0036
GLY 2210.0036
ALA 2220.0037
PHE 2230.0027
LYS 2240.0027
GLU 2250.0024
ILE 2260.0025
ARG 2270.0021
LEU 2280.0025
HIS 2290.0029
LYS 2300.0030
LEU 2310.0025
THR 2320.0028
LEU 2330.0022
ARG 2340.0024
ASN 2350.0021
ASN 2360.0022
PHE 2370.0015
ASP 2380.0015
SER 2390.0010
LEU 2400.0009
ASN 2410.0016
VAL 2420.0017
MET 2430.0010
LYS 2440.0014
THR 2450.0022
CYS 2460.0019
ILE 2470.0011
GLN 2480.0019
GLY 2490.0024
LEU 2500.0017
ALA 2510.0018
GLY 2520.0015
LEU 2530.0012
GLU 2540.0009
VAL 2550.0015
HIS 2560.0022
ARG 2570.0025
LEU 2580.0019
VAL 2590.0023
LEU 2600.0017
GLY 2610.0019
GLU 2620.0022
PHE 2630.0029
ARG 2640.0031
ASN 2650.0033
GLU 2660.0026
GLY 2670.0019
ASN 2680.0014
LEU 2690.0008
GLU 2700.0007
LYS 2710.0012
PHE 2720.0013
ASP 2730.0018
LYS 2740.0022
SER 2750.0018
ALA 2760.0011
LEU 2770.0011
GLU 2780.0015
GLY 2790.0010
LEU 2800.0007
CYS 2810.0013
ASN 2820.0013
LEU 2830.0004
THR 2840.0006
ILE 2850.0013
GLU 2860.0022
GLU 2870.0026
PHE 2880.0024
ARG 2890.0027
LEU 2900.0025
ALA 2910.0028
TYR 2920.0028
LEU 2930.0023
ASP 2940.0023
TYR 2950.0022
TYR 2960.0028
LEU 2970.0029
ASP 2980.0033
GLY 2990.0034
ILE 3000.0031
ILE 3010.0032
ASP 3020.0029
LEU 3030.0024
PHE 3040.0025
ASN 3050.0026
CYS 3060.0020
LEU 3070.0023
THR 3080.0029
ASN 3090.0028
VAL 3100.0027
SER 3110.0032
SER 3120.0034
PHE 3130.0033
SER 3140.0035
LEU 3150.0034
VAL 3160.0035
SER 3170.0035
VAL 3180.0033
THR 3190.0035
ILE 3200.0036
GLU 3210.0039
ARG 3220.0038
VAL 3230.0039
LYS 3240.0041
ASP 3250.0037
PHE 3260.0038
SER 3270.0040
TYR 3280.0038
ASN 3290.0039
PHE 3300.0036
GLY 3310.0037
TRP 3320.0038
GLN 3330.0041
HIS 3340.0041
LEU 3350.0041
GLU 3360.0041
LEU 3370.0041
VAL 3380.0042
ASN 3390.0042
CYS 3400.0041
LYS 3410.0042
PHE 3420.0043
GLY 3430.0044
GLN 3440.0045
PHE 3450.0045
PRO 3460.0043
THR 3470.0042
LEU 3480.0043
LYS 3490.0043
LEU 3500.0044
LYS 3510.0045
SER 3520.0046
LEU 3530.0046
LYS 3540.0047
ARG 3550.0047
LEU 3560.0046
THR 3570.0045
PHE 3580.0046
THR 3590.0046
SER 3600.0046
ASN 3610.0046
LYS 3620.0046
GLY 3630.0046
GLY 3640.0046
ASN 3650.0044
ALA 3660.0044
PHE 3670.0041
SER 3680.0041
GLU 3690.0041
VAL 3700.0042
ASP 3710.0042
LEU 3720.0047
PRO 3730.0047
SER 3740.0048
LEU 3750.0047
GLU 3760.0047
PHE 3770.0047
LEU 3780.0046
ASP 3790.0047
LEU 3800.0046
SER 3810.0046
ARG 3820.0047
ASN 3830.0047
GLY 3840.0043
LEU 3850.0041
SER 3860.0038
PHE 3870.0034
LYS 3880.0030
GLY 3890.0028
CYS 3900.0024
CYS 3910.0024
SER 3920.0027
GLN 3930.0032
SER 3940.0036
ASP 3950.0036
PHE 3960.0041
GLY 3970.0043
THR 3980.0042
ILE 3990.0040
SER 4000.0043
LEU 4010.0042
LYS 4020.0043
TYR 4030.0045
LEU 4040.0041
ASP 4050.0043
LEU 4060.0039
SER 4070.0040
PHE 4080.0042
ASN 4090.0039
GLY 4100.0034
VAL 4110.0028
ILE 4120.0023
THR 4130.0020
MET 4140.0017
SER 4150.0023
SER 4160.0020
ASN 4170.0014
PHE 4180.0017
LEU 4190.0019
GLY 4200.0026
LEU 4210.0028
GLU 4220.0024
GLN 4230.0035
LEU 4240.0036
GLU 4250.0045
HIS 4260.0047
LEU 4270.0037
ASP 4280.0040
PHE 4290.0033
GLN 4300.0040
HIS 4310.0037
SER 4320.0030
ASN 4330.0020
LEU 4340.0015
LYS 4350.0016
GLN 4360.0023
MET 4370.0024
SER 4380.0037
GLU 4390.0040
PHE 4400.0037
SER 4410.0031
VAL 4420.0017
PHE 4430.0019
LEU 4440.0020
SER 4450.0015
LEU 4460.0023
ARG 4470.0027
ASN 4480.0037
LEU 4490.0040
ILE 4500.0054
TYR 4510.0056
LEU 4520.0045
ASP 4530.0047
ILE 4540.0036
SER 4550.0044
HIS 4560.0037
THR 4570.0026
HIS 4580.0022
THR 4590.0027
ARG 4600.0040
VAL 4610.0050
ALA 4620.0059
PHE 4630.0059
ASN 4640.0066
GLY 4650.0054
ILE 4660.0041
PHE 4670.0042
ASN 4680.0041
GLY 4690.0033
LEU 4700.0039
SER 4710.0048
SER 4720.0053
LEU 4730.0055
GLU 4740.0072
VAL 4750.0072
LEU 4760.0062
LYS 4770.0063
MET 4780.0054
ALA 4790.0061
GLY 4800.0053
ASN 4810.0045
SER 4820.0054
PHE 4830.0066
GLN 4840.0075
GLU 4850.0090
ASN 4860.0088
PHE 4870.0098
LEU 4880.0092
PRO 4890.0092
ASP 4900.0092
ILE 4910.0072
PHE 4920.0075
THR 4930.0081
GLU 4940.0066
LEU 4950.0067
ARG 4960.0081
ASN 4970.0080
LEU 4980.0082
THR 4990.0098
PHE 5000.0095
LEU 5010.0086
ASP 5020.0084
LEU 5030.0080
SER 5040.0084
GLN 5050.0074
CYS 5060.0069
GLN 5070.0079
LEU 5080.0093
GLU 5090.0109
GLN 5100.0118
LEU 5110.0117
SER 5120.0121
PRO 5130.0136
THR 5140.0124
ALA 5150.0107
PHE 5160.0111
ASN 5170.0120
SER 5180.0105
LEU 5190.0104
SER 5200.0118
SER 5210.0113
LEU 5220.0112
GLN 5230.0126
VAL 5240.0121
LEU 5250.0113
ASN 5260.0108
MET 5270.0107
SER 5280.0109
HIS 5290.0098
ASN 5300.0098
ASN 5310.0107
PHE 5320.0125
PHE 5330.0142
SER 5340.0157
LEU 5350.0159
ASP 5360.0161
THR 5370.0165
PHE 5380.0163
PRO 5390.0142
TYR 5400.0146
LYS 5410.0161
CYS 5420.0146
LEU 5430.0139
ASN 5440.0149
SER 5450.0143
LEU 5460.0143
GLN 5470.0154
VAL 5480.0146
LEU 5490.0140
ASP 5500.0133
TYR 5510.0134
SER 5520.0133
LEU 5530.0123
ASN 5540.0122
HIS 5550.0133
ILE 5560.0151
MET 5570.0168
THR 5580.0181
SER 5590.0184
LYS 5600.0187
LYS 5610.0189
GLN 5620.0207
GLU 5630.0198
LEU 5640.0196
GLN 5650.0205
HIS 5660.0187
PHE 5670.0178
PRO 5680.0175
SER 5690.0189
SER 5700.0176
LEU 5710.0172
ALA 5720.0181
PHE 5730.0172
LEU 5740.0166
ASN 5750.0158
LEU 5760.0160
THR 5770.0157
GLN 5780.0147
ASN 5790.0148
ASP 5800.0153
PHE 5810.0174
ALA 5820.0187
CYS 5830.0207
THR 5840.0219
CYS 5850.0240
GLU 5860.0231
HIS 5870.0217
GLN 5880.0233
SER 5890.0231
PHE 5900.0211
LEU 5910.0218
GLN 5920.0235
TRP 5930.0222
ILE 5940.0211
LYS 5950.0231
ASP 5960.0236
GLN 5970.0218
ARG 5980.0219
GLN 5990.0218
LEU 6000.0197
LEU 6010.0191
VAL 6020.0182
GLU 6030.0186
VAL 6040.0201
GLU 6050.0197
ARG 6060.0174
MET 6070.0179
GLU 6080.0180
CYS 6090.0185
ALA 6100.0169
THR 6110.0175
PRO 6120.0194
SER 6130.0185
ASP 6140.0206
LYS 6150.0207
GLN 6160.0184
GLY 6170.0184
MET 6180.0205
PRO 6190.0206
VAL 6200.0208
LEU 6210.0225
SER 6220.0238
LEU 6230.0237
ASN 6240.0257
ILE 6250.0259
THR 6260.0278
CYS 6270.0277
GLU 10.0127
ALA 20.0117
ALA 30.0117
ALA 40.0105
LYS 50.0090
MET 60.0088
GLN 70.0087
ARG 80.0070
LEU 90.0059
VAL 100.0066
LEU 110.0058
LEU 120.0040
LEU 130.0041
ALA 140.0053
ILE 150.0038
SER 160.0032
LEU 170.0044
LEU 180.0046
LEU 190.0037
TYR 200.0042
GLN 210.0051
ASP 220.0048
LEU 230.0047
PRO 240.0054
VAL 250.0056
ARG 260.0054
SER 270.0049
GLU 280.0050
PHE 290.0043
GLU 300.0041
LEU 310.0048
ASP 320.0051
ARG 330.0045
ILE 340.0049
CYS 350.0058
GLY 360.0051
TYR 370.0048
GLY 380.0047
THR 390.0046
ALA 400.0052
ARG 410.0053
CYS 420.0056
ARG 430.0055
LYS 440.0058
LYS 450.0064
CYS 460.0069
ARG 470.0068
SER 480.0077
GLN 490.0075
GLU 500.0074
TYR 510.0080
ARG 520.0080
ILE 530.0083
GLY 540.0083
ARG 550.0078
CYS 560.0068
PRO 570.0070
ASN 580.0064
THR 590.0071
TYR 600.0065
ALA 610.0069
CYS 620.0068
CYS 630.0067
LEU 640.0069
ARG 650.0067
LYS 660.0081
TRP 670.0080
ASP 680.0077
GLU 690.0086
SER 700.0078
LEU 710.0073
LEU 720.0084
ASN 730.0085
ARG 740.0073
THR 750.0075
LYS 760.0082
PRO 770.0071
GLU 780.0073
ALA 790.0070
ALA 800.0058
ALA 810.0046
LYS 820.0047
LYS 830.0046
GLU 840.0046
MET 850.0048
ASN 860.0050
LEU 870.0048
SER 880.0052
VAL 890.0049
GLY 900.0054
LEU 910.0052
GLY 920.0057
GLY 930.0063
GLY 940.0066
SER 950.0060
ASN 960.0057
LEU 970.0050
SER 980.0051
VAL 990.0045
GLY 1000.0046
LEU 1010.0044
GLY 1020.0046
GLU 1030.0045
ILE 1040.0046
GLY 1050.0045
GLY 1060.0037
GLY 1070.0039
SER 1080.0040
LYS 1090.0038
LEU 1100.0042
LEU 1110.0039
ASP 1120.0037
ILE 1130.0037
ASN 1140.0037
LEU 1150.0038
GLY 1160.0041
ARG 1170.0040
GLY 1180.0044
GLY 1190.0043
GLY 1200.0047
SER 1210.0047
MET 1220.0051
VAL 1230.0048
ASP 1240.0053
LEU 1250.0051
THR 1260.0054
PHE 1270.0052
GLY 1280.0054
GLY 1290.0058
VAL 1300.0053
GLY 1310.0058
GLY 1320.0057
GLY 1330.0065
SER 1340.0061
THR 1350.0069
PHE 1360.0063
THR 1370.0069
PHE 1380.0066
PHE 1390.0071
PRO 1400.0069
LEU 1410.0064
VAL 1420.0066
ILE 1430.0055
GLY 1440.0057
GLY 1450.0047
GLY 1460.0042
SER 1470.0039
ASP 1480.0037
ALA 1490.0039
MET 1500.0043
TYR 1510.0045
LEU 1520.0048
GLY 1530.0054
PHE 1540.0057
ALA 1550.0065
ALA 1560.0064
GLY 1570.0075
GLY 1580.0078
GLY 1590.0082
SER 1600.0082
ALA 1610.0083
GLY 1620.0080
GLY 1630.0078
GLU 1640.0070
ASN 1650.0067
HIS 1660.0064
VAL 1670.0060
ALA 1680.0060
PHE 1690.0054
GLY 1700.0057
PRO 1710.0055
GLY 1720.0066
PRO 1730.0073
GLY 1740.0075
VAL 1750.0067
ASP 1760.0073
LEU 1770.0073
THR 1780.0078
PHE 1790.0080
GLY 1800.0087
GLY 1810.0094
VAL 1820.0098
GLN 1830.0093
PHE 1840.0093
ALA 1850.0094
MET 1860.0089
VAL 1870.0114
ASN 1880.0123
ASN 1890.0147
GLY 1900.0159
PRO 1910.0315
GLY 1920.0475
PRO 1930.0649
GLY 1940.0783
GLU 1950.0647
SER 1960.0671
PHE 1970.0553
THR 1980.0559
ALA 1990.0468
GLN 2000.0404
PRO 2010.0375
ALA 2020.0278
ASP 2030.0182
MET 2040.0181
GLN 2050.0163
ALA 2060.0127
GLY 2070.0263
ILE 2080.0211
LYS 2090.0330
GLY 2100.0356
PRO 2110.0319
GLY 2120.0414
PRO 2130.0375
GLY 2140.0262
GLY 2150.0197
SER 2160.0106
ILE 2170.0049
GLN 2180.0031
VAL 2190.0044
ILE 2200.0067
ASN 2210.0078
GLY 2220.0064
SER 2230.0059
THR 2240.0041
ILE 2250.0028
GLY 2260.0008
THR 2270.0011
GLY 2280.0017
SER 2290.0023
LYS 2300.0025
LYS 2310.0020
THR 2320.0025
ILE 2330.0028
LEU 2340.0033
ILE 2350.0043
TYR 2360.0041
SER 2370.0043
ILE 2380.0043
ILE 2390.0038
GLY 2400.0040
VAL 2410.0040
LYS 2420.0034
LYS 2430.0037
GLY 2440.0035
THR 2450.0028
LEU 2460.0032
ALA 2470.0027
TRP 2480.0027
ALA 2490.0025
ARG 2500.0026
THR 2510.0034
GLY 2520.0032
PHE 2530.0032
SER 2540.0036
PRO 2550.0032
ALA 2560.0047
LYS 2570.0049
LYS 2580.0034
LEU 2590.0033
ASN 2600.0026
ALA 2610.0032
GLY 2620.0031
VAL 2630.0041
VAL 2640.0040
ARG 2650.0043
VAL 2660.0046
PHE 2670.0050
PHE 2680.0065
LEU 2690.0068
ASN 2700.0075
GLN 2710.0065
LYS 2720.0085
LYS 2730.0101
ALA 2740.0088
LYS 2750.0095
ASP 2760.0123
VAL 2770.0125
LEU 2780.0117
ARG 2790.0141
LYS 2800.0157
THR 2810.0170
SER 2820.0148
ARG 2830.0108
PRO 2840.0080
MET 2850.0039
VAL 2860.0108
ASP 2870.0201
LEU 2880.0257
THR 2890.0387
PHE 2900.0493
GLY 2910.0641
GLY 2920.0713

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.