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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 14  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.1093
GLU 270.0116
PRO 280.0112
CYS 290.0105
VAL 300.0107
GLU 310.0109
VAL 320.0103
VAL 330.0106
PRO 340.0114
ASN 350.0111
ILE 360.0100
THR 370.0094
TYR 380.0095
GLN 390.0091
CYS 400.0091
MET 410.0086
GLU 420.0088
LEU 430.0095
ASN 440.0090
PHE 450.0087
TYR 460.0081
LYS 470.0081
ILE 480.0082
PRO 490.0093
ASP 500.0100
ASN 510.0109
LEU 520.0105
PRO 530.0109
PHE 540.0105
SER 550.0104
THR 560.0095
LYS 570.0087
ASN 580.0081
LEU 590.0080
ASP 600.0076
LEU 610.0075
SER 620.0070
PHE 630.0073
ASN 640.0076
PRO 650.0071
LEU 660.0067
ARG 670.0058
HIS 680.0055
LEU 690.0057
GLY 700.0059
SER 710.0063
TYR 720.0072
SER 730.0072
PHE 740.0076
PHE 750.0084
SER 760.0092
PHE 770.0089
PRO 780.0090
GLU 790.0090
LEU 800.0080
GLN 810.0073
VAL 820.0067
LEU 830.0065
ASP 840.0062
LEU 850.0059
SER 860.0056
ARG 870.0057
CYS 880.0060
GLU 890.0055
ILE 900.0049
GLN 910.0042
THR 920.0040
ILE 930.0043
GLU 940.0046
ASP 950.0049
GLY 960.0058
ALA 970.0058
TYR 980.0062
GLN 990.0067
SER 1000.0077
LEU 1010.0072
SER 1020.0074
HIS 1030.0075
LEU 1040.0066
SER 1050.0060
THR 1060.0054
LEU 1070.0050
ILE 1080.0047
LEU 1090.0043
THR 1100.0043
GLY 1110.0045
ASN 1120.0043
PRO 1130.0039
ILE 1140.0032
GLN 1150.0027
SER 1160.0027
LEU 1170.0028
ALA 1180.0032
LEU 1190.0035
GLY 1200.0045
ALA 1210.0043
PHE 1220.0045
SER 1230.0053
GLY 1240.0063
LEU 1250.0058
SER 1260.0064
SER 1270.0062
LEU 1280.0053
GLN 1290.0047
LYS 1300.0041
LEU 1310.0037
VAL 1320.0034
ALA 1330.0029
VAL 1340.0030
GLU 1350.0033
THR 1360.0029
ASN 1370.0026
LEU 1380.0017
ALA 1390.0012
SER 1400.0006
LEU 1410.0010
GLU 1420.0015
ASN 1430.0014
PHE 1440.0019
PRO 1450.0028
ILE 1460.0032
GLY 1470.0036
HIS 1480.0045
LEU 1490.0045
LYS 1500.0048
THR 1510.0050
LEU 1520.0040
LYS 1530.0036
GLU 1540.0030
LEU 1550.0025
ASN 1560.0024
VAL 1570.0018
ALA 1580.0021
HIS 1590.0027
ASN 1600.0021
LEU 1610.0019
ILE 1620.0012
GLN 1630.0017
SER 1640.0016
PHE 1650.0014
LYS 1660.0018
LEU 1670.0019
PRO 1680.0023
GLU 1690.0032
TYR 1700.0032
PHE 1710.0029
SER 1720.0038
ASN 1730.0042
LEU 1740.0037
THR 1750.0043
ASN 1760.0042
LEU 1770.0031
GLU 1780.0027
HIS 1790.0021
LEU 1800.0015
ASP 1810.0014
LEU 1820.0009
SER 1830.0016
SER 1840.0023
ASN 1850.0019
LYS 1860.0023
ILE 1870.0019
GLN 1880.0027
SER 1890.0027
ILE 1900.0024
TYR 1910.0031
CYS 1920.0035
THR 1930.0034
ASP 1940.0025
LEU 1950.0026
ARG 1960.0034
VAL 1970.0032
LEU 1980.0030
HIS 1990.0038
GLN 2000.0042
MET 2010.0040
PRO 2020.0040
LEU 2030.0041
LEU 2040.0034
ASN 2050.0029
LEU 2060.0021
SER 2070.0014
LEU 2080.0008
ASP 2090.0008
LEU 2100.0010
SER 2110.0017
LEU 2120.0023
ASN 2130.0022
PRO 2140.0029
MET 2150.0027
ASN 2160.0034
PHE 2170.0033
ILE 2180.0029
GLN 2190.0035
PRO 2200.0038
GLY 2210.0038
ALA 2220.0031
PHE 2230.0027
LYS 2240.0034
GLU 2250.0036
ILE 2260.0029
ARG 2270.0025
LEU 2280.0018
HIS 2290.0017
LYS 2300.0010
LEU 2310.0007
THR 2320.0008
LEU 2330.0014
ARG 2340.0018
ASN 2350.0024
ASN 2360.0024
PHE 2370.0029
ASP 2380.0036
SER 2390.0038
LEU 2400.0036
ASN 2410.0039
VAL 2420.0036
MET 2430.0030
LYS 2440.0033
THR 2450.0035
CYS 2460.0028
ILE 2470.0026
GLN 2480.0032
GLY 2490.0030
LEU 2500.0024
ALA 2510.0030
GLY 2520.0030
LEU 2530.0024
GLU 2540.0022
VAL 2550.0015
HIS 2560.0014
ARG 2570.0008
LEU 2580.0007
VAL 2590.0008
LEU 2600.0014
GLY 2610.0019
GLU 2620.0024
PHE 2630.0028
ARG 2640.0034
ASN 2650.0037
GLU 2660.0035
GLY 2670.0037
ASN 2680.0035
LEU 2690.0035
GLU 2700.0040
LYS 2710.0038
PHE 2720.0031
ASP 2730.0032
LYS 2740.0029
SER 2750.0031
ALA 2760.0028
LEU 2770.0023
GLU 2780.0028
GLY 2790.0027
LEU 2800.0021
CYS 2810.0025
ASN 2820.0028
LEU 2830.0023
THR 2840.0021
ILE 2850.0015
GLU 2860.0013
GLU 2870.0008
PHE 2880.0007
ARG 2890.0008
LEU 2900.0013
ALA 2910.0016
TYR 2920.0022
LEU 2930.0025
ASP 2940.0031
TYR 2950.0032
TYR 2960.0031
LEU 2970.0026
ASP 2980.0027
GLY 2990.0022
ILE 3000.0019
ILE 3010.0020
ASP 3020.0022
LEU 3030.0021
PHE 3040.0016
ASN 3050.0018
CYS 3060.0018
LEU 3070.0013
THR 3080.0012
ASN 3090.0013
VAL 3100.0010
SER 3110.0010
SER 3120.0007
PHE 3130.0006
SER 3140.0009
LEU 3150.0013
VAL 3160.0017
SER 3170.0021
VAL 3180.0021
THR 3190.0024
ILE 3200.0021
GLU 3210.0024
ARG 3220.0020
VAL 3230.0016
LYS 3240.0013
ASP 3250.0013
PHE 3260.0009
SER 3270.0008
TYR 3280.0009
ASN 3290.0007
PHE 3300.0008
GLY 3310.0010
TRP 3320.0007
GLN 3330.0010
HIS 3340.0009
LEU 3350.0009
GLU 3360.0011
LEU 3370.0013
VAL 3380.0017
ASN 3390.0021
CYS 3400.0020
LYS 3410.0023
PHE 3420.0020
GLY 3430.0022
GLN 3440.0020
PHE 3450.0017
PRO 3460.0013
THR 3470.0012
LEU 3480.0010
LYS 3490.0009
LEU 3500.0009
LYS 3510.0011
SER 3520.0011
LEU 3530.0010
LYS 3540.0014
ARG 3550.0013
LEU 3560.0013
THR 3570.0014
PHE 3580.0015
THR 3590.0017
SER 3600.0020
ASN 3610.0019
LYS 3620.0023
GLY 3630.0022
GLY 3640.0021
ASN 3650.0020
ALA 3660.0020
PHE 3670.0020
SER 3680.0018
GLU 3690.0018
VAL 3700.0016
ASP 3710.0015
LEU 3720.0014
PRO 3730.0017
SER 3740.0016
LEU 3750.0016
GLU 3760.0018
PHE 3770.0016
LEU 3780.0016
ASP 3790.0016
LEU 3800.0017
SER 3810.0018
ARG 3820.0019
ASN 3830.0019
GLY 3840.0021
LEU 3850.0020
SER 3860.0022
PHE 3870.0023
LYS 3880.0026
GLY 3890.0028
CYS 3900.0026
CYS 3910.0025
SER 3920.0027
GLN 3930.0025
SER 3940.0025
ASP 3950.0023
PHE 3960.0020
GLY 3970.0021
THR 3980.0022
ILE 3990.0024
SER 4000.0023
LEU 4010.0021
LYS 4020.0021
TYR 4030.0018
LEU 4040.0018
ASP 4050.0017
LEU 4060.0018
SER 4070.0017
PHE 4080.0017
ASN 4090.0019
GLY 4100.0022
VAL 4110.0024
ILE 4120.0024
THR 4130.0028
MET 4140.0028
SER 4150.0031
SER 4160.0031
ASN 4170.0031
PHE 4180.0028
LEU 4190.0031
GLY 4200.0030
LEU 4210.0026
GLU 4220.0028
GLN 4230.0026
LEU 4240.0023
GLU 4250.0021
HIS 4260.0018
LEU 4270.0018
ASP 4280.0015
PHE 4290.0017
GLN 4300.0015
HIS 4310.0018
SER 4320.0019
ASN 4330.0023
LEU 4340.0024
LYS 4350.0028
GLN 4360.0031
MET 4370.0029
SER 4380.0032
GLU 4390.0036
PHE 4400.0035
SER 4410.0032
VAL 4420.0029
PHE 4430.0027
LEU 4440.0031
SER 4450.0031
LEU 4460.0027
ARG 4470.0029
ASN 4480.0027
LEU 4490.0023
ILE 4500.0020
TYR 4510.0016
LEU 4520.0016
ASP 4530.0014
ILE 4540.0016
SER 4550.0015
HIS 4560.0018
THR 4570.0019
HIS 4580.0023
THR 4590.0024
ARG 4600.0027
VAL 4610.0027
ALA 4620.0032
PHE 4630.0033
ASN 4640.0031
GLY 4650.0032
ILE 4660.0029
PHE 4670.0026
ASN 4680.0030
GLY 4690.0031
LEU 4700.0026
SER 4710.0029
SER 4720.0026
LEU 4730.0021
GLU 4740.0018
VAL 4750.0014
LEU 4760.0014
LYS 4770.0012
MET 4780.0015
ALA 4790.0014
GLY 4800.0018
ASN 4810.0021
SER 4820.0024
PHE 4830.0026
GLN 4840.0031
GLU 4850.0032
ASN 4860.0027
PHE 4870.0025
LEU 4880.0022
PRO 4890.0025
ASP 4900.0025
ILE 4910.0025
PHE 4920.0022
THR 4930.0026
GLU 4940.0028
LEU 4950.0024
ARG 4960.0025
ASN 4970.0024
LEU 4980.0018
THR 4990.0016
PHE 5000.0012
LEU 5010.0010
ASP 5020.0009
LEU 5030.0012
SER 5040.0013
GLN 5050.0018
CYS 5060.0019
GLN 5070.0022
LEU 5080.0020
GLU 5090.0023
GLN 5100.0021
LEU 5110.0018
SER 5120.0021
PRO 5130.0019
THR 5140.0021
ALA 5150.0020
PHE 5160.0016
ASN 5170.0020
SER 5180.0024
LEU 5190.0020
SER 5200.0022
SER 5210.0021
LEU 5220.0016
GLN 5230.0016
VAL 5240.0012
LEU 5250.0008
ASN 5260.0008
MET 5270.0010
SER 5280.0014
HIS 5290.0019
ASN 5300.0019
ASN 5310.0023
PHE 5320.0020
PHE 5330.0022
SER 5340.0018
LEU 5350.0013
ASP 5360.0011
THR 5370.0008
PHE 5380.0011
PRO 5390.0013
TYR 5400.0011
LYS 5410.0013
CYS 5420.0018
LEU 5430.0016
ASN 5440.0020
SER 5450.0020
LEU 5460.0015
GLN 5470.0017
VAL 5480.0014
LEU 5490.0010
ASP 5500.0012
TYR 5510.0013
SER 5520.0019
LEU 5530.0022
ASN 5540.0021
HIS 5550.0025
ILE 5560.0021
MET 5570.0025
THR 5580.0021
SER 5590.0016
LYS 5600.0017
LYS 5610.0013
GLN 5620.0011
GLU 5630.0008
LEU 5640.0009
GLN 5650.0010
HIS 5660.0010
PHE 5670.0011
PRO 5680.0015
SER 5690.0020
SER 5700.0021
LEU 5710.0017
ALA 5720.0021
PHE 5730.0019
LEU 5740.0016
ASN 5750.0018
LEU 5760.0019
THR 5770.0024
GLN 5780.0027
ASN 5790.0025
ASP 5800.0029
PHE 5810.0028
ALA 5820.0030
CYS 5830.0033
THR 5840.0034
CYS 5850.0032
GLU 5860.0029
HIS 5870.0025
GLN 5880.0025
SER 5890.0020
PHE 5900.0019
LEU 5910.0024
GLN 5920.0023
TRP 5930.0019
ILE 5940.0022
LYS 5950.0026
ASP 5960.0024
GLN 5970.0022
ARG 5980.0026
GLN 5990.0027
LEU 6000.0022
LEU 6010.0023
VAL 6020.0024
GLU 6030.0029
VAL 6040.0031
GLU 6050.0035
ARG 6060.0032
MET 6070.0029
GLU 6080.0033
CYS 6090.0034
ALA 6100.0035
THR 6110.0037
PRO 6120.0040
SER 6130.0044
ASP 6140.0046
LYS 6150.0042
GLN 6160.0040
GLY 6170.0040
MET 6180.0040
PRO 6190.0036
VAL 6200.0032
LEU 6210.0032
SER 6220.0038
LEU 6230.0037
ASN 6240.0038
ILE 6250.0034
THR 6260.0037
CYS 6270.0037
GLU 10.0253
ALA 20.0240
ALA 30.0220
ALA 40.0204
LYS 50.0193
MET 60.0179
GLN 70.0158
ARG 80.0147
LEU 90.0136
VAL 100.0120
LEU 110.0103
LEU 120.0094
LEU 130.0086
ALA 140.0071
ILE 150.0060
SER 160.0051
LEU 170.0046
LEU 180.0036
LEU 190.0035
TYR 200.0032
GLN 210.0024
ASP 220.0021
LEU 230.0022
PRO 240.0017
VAL 250.0023
ARG 260.0026
SER 270.0022
GLU 280.0028
PHE 290.0026
GLU 300.0019
LEU 310.0018
ASP 320.0024
ARG 330.0021
ILE 340.0020
CYS 350.0026
GLY 360.0027
TYR 370.0024
GLY 380.0022
THR 390.0026
ALA 400.0027
ARG 410.0027
CYS 420.0031
ARG 430.0037
LYS 440.0044
LYS 450.0048
CYS 460.0046
ARG 470.0044
SER 480.0048
GLN 490.0043
GLU 500.0043
TYR 510.0049
ARG 520.0049
ILE 530.0048
GLY 540.0047
ARG 550.0044
CYS 560.0037
PRO 570.0036
ASN 580.0039
THR 590.0045
TYR 600.0042
ALA 610.0044
CYS 620.0039
CYS 630.0038
LEU 640.0037
ARG 650.0036
LYS 660.0046
TRP 670.0045
ASP 680.0041
GLU 690.0048
SER 700.0040
LEU 710.0043
LEU 720.0053
ASN 730.0049
ARG 740.0045
THR 750.0054
LYS 760.0060
PRO 770.0060
GLU 780.0055
ALA 790.0061
ALA 800.0066
ALA 810.0045
LYS 820.0045
LYS 830.0026
GLU 840.0029
MET 850.0022
ASN 860.0019
LEU 870.0018
SER 880.0024
VAL 890.0022
GLY 900.0042
LEU 910.0042
GLY 920.0063
GLY 930.0083
GLY 940.0085
SER 950.0068
ASN 960.0053
LEU 970.0039
SER 980.0037
VAL 990.0037
GLY 1000.0043
LEU 1010.0051
GLY 1020.0061
GLU 1030.0063
ILE 1040.0081
GLY 1050.0086
GLY 1060.0093
GLY 1070.0097
SER 1080.0097
LYS 1090.0087
LEU 1100.0094
LEU 1110.0078
ASP 1120.0072
ILE 1130.0048
ASN 1140.0050
LEU 1150.0029
GLY 1160.0037
ARG 1170.0036
GLY 1180.0039
GLY 1190.0033
GLY 1200.0048
SER 1210.0039
MET 1220.0053
VAL 1230.0040
ASP 1240.0055
LEU 1250.0051
THR 1260.0049
PHE 1270.0052
GLY 1280.0042
GLY 1290.0063
VAL 1300.0061
GLY 1310.0077
GLY 1320.0106
GLY 1330.0135
SER 1340.0135
THR 1350.0155
PHE 1360.0141
THR 1370.0167
PHE 1380.0147
PHE 1390.0170
PRO 1400.0153
LEU 1410.0147
VAL 1420.0149
ILE 1430.0113
GLY 1440.0115
GLY 1450.0076
GLY 1460.0064
SER 1470.0063
ASP 1480.0046
ALA 1490.0067
MET 1500.0073
TYR 1510.0096
LEU 1520.0101
GLY 1530.0134
PHE 1540.0141
ALA 1550.0175
ALA 1560.0173
GLY 1570.0197
GLY 1580.0202
GLY 1590.0199
SER 1600.0181
ALA 1610.0171
GLY 1620.0146
GLY 1630.0134
GLU 1640.0108
ASN 1650.0111
HIS 1660.0096
VAL 1670.0094
ALA 1680.0091
PHE 1690.0079
GLY 1700.0089
PRO 1710.0078
GLY 1720.0108
PRO 1730.0123
GLY 1740.0139
VAL 1750.0125
ASP 1760.0139
LEU 1770.0144
THR 1780.0150
PHE 1790.0160
GLY 1800.0170
GLY 1810.0186
VAL 1820.0203
GLN 1830.0192
PHE 1840.0196
ALA 1850.0197
MET 1860.0192
VAL 1870.0216
ASN 1880.0206
ASN 1890.0251
GLY 1900.0245
PRO 1910.0347
GLY 1920.0621
PRO 1930.0797
GLY 1940.0774
GLU 1950.0506
SER 1960.0358
PHE 1970.0140
THR 1980.0139
ALA 1990.0303
GLN 2000.0498
PRO 2010.0688
ALA 2020.0824
ASP 2030.0681
MET 2040.0678
GLN 2050.0899
ALA 2060.0791
GLY 2070.0624
ILE 2080.0404
LYS 2090.0431
GLY 2100.0428
PRO 2110.0689
GLY 2120.0965
PRO 2130.1093
GLY 2140.1041
GLY 2150.0764
SER 2160.0593
ILE 2170.0479
GLN 2180.0390
VAL 2190.0282
ILE 2200.0208
ASN 2210.0188
GLY 2220.0154
SER 2230.0115
THR 2240.0108
ILE 2250.0071
GLY 2260.0074
THR 2270.0066
GLY 2280.0051
SER 2290.0034
LYS 2300.0024
LYS 2310.0027
THR 2320.0029
ILE 2330.0045
LEU 2340.0059
ILE 2350.0073
TYR 2360.0059
SER 2370.0053
ILE 2380.0044
ILE 2390.0036
GLY 2400.0030
VAL 2410.0027
LYS 2420.0023
LYS 2430.0024
GLY 2440.0030
THR 2450.0031
LEU 2460.0039
ALA 2470.0034
TRP 2480.0037
ALA 2490.0036
ARG 2500.0043
THR 2510.0052
GLY 2520.0041
PHE 2530.0035
SER 2540.0024
PRO 2550.0019
ALA 2560.0030
LYS 2570.0033
LYS 2580.0035
LEU 2590.0051
ASN 2600.0059
ALA 2610.0099
GLY 2620.0084
VAL 2630.0095
VAL 2640.0094
ARG 2650.0083
VAL 2660.0083
PHE 2670.0063
PHE 2680.0063
LEU 2690.0042
ASN 2700.0035
GLN 2710.0026
LYS 2720.0021
LYS 2730.0026
ALA 2740.0028
LYS 2750.0022
ASP 2760.0024
VAL 2770.0032
LEU 2780.0031
ARG 2790.0029
LYS 2800.0034
THR 2810.0041
SER 2820.0045
ARG 2830.0055
PRO 2840.0065
MET 2850.0072
VAL 2860.0079
ASP 2870.0118
LEU 2880.0134
THR 2890.0173
PHE 2900.0200
GLY 2910.0249
GLY 2920.0285

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.