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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 15  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0995
GLU 270.0207
PRO 280.0204
CYS 290.0187
VAL 300.0189
GLU 310.0192
VAL 320.0180
VAL 330.0184
PRO 340.0200
ASN 350.0192
ILE 360.0172
THR 370.0161
TYR 380.0164
GLN 390.0159
CYS 400.0160
MET 410.0153
GLU 420.0163
LEU 430.0176
ASN 440.0170
PHE 450.0161
TYR 460.0153
LYS 470.0146
ILE 480.0142
PRO 490.0163
ASP 500.0172
ASN 510.0191
LEU 520.0183
PRO 530.0187
PHE 540.0176
SER 550.0176
THR 560.0161
LYS 570.0145
ASN 580.0135
LEU 590.0135
ASP 600.0130
LEU 610.0131
SER 620.0125
PHE 630.0135
ASN 640.0142
PRO 650.0139
LEU 660.0125
ARG 670.0113
HIS 680.0102
LEU 690.0095
GLY 700.0095
SER 710.0092
TYR 720.0108
SER 730.0114
PHE 740.0121
PHE 750.0133
SER 760.0151
PHE 770.0145
PRO 780.0144
GLU 790.0147
LEU 800.0130
GLN 810.0117
VAL 820.0107
LEU 830.0104
ASP 840.0102
LEU 850.0100
SER 860.0098
ARG 870.0108
CYS 880.0113
GLU 890.0111
ILE 900.0094
GLN 910.0087
THR 920.0075
ILE 930.0068
GLU 940.0066
ASP 950.0059
GLY 960.0076
ALA 970.0084
TYR 980.0089
GLN 990.0094
SER 1000.0115
LEU 1010.0109
SER 1020.0111
HIS 1030.0117
LEU 1040.0100
SER 1050.0090
THR 1060.0079
LEU 1070.0074
ILE 1080.0073
LEU 1090.0070
THR 1100.0074
GLY 1110.0085
ASN 1120.0085
PRO 1130.0086
ILE 1140.0069
GLN 1150.0070
SER 1160.0056
LEU 1170.0042
ALA 1180.0035
LEU 1190.0029
GLY 1200.0047
ALA 1210.0052
PHE 1220.0055
SER 1230.0066
GLY 1240.0086
LEU 1250.0081
SER 1260.0092
SER 1270.0093
LEU 1280.0075
GLN 1290.0068
LYS 1300.0056
LEU 1310.0047
VAL 1320.0048
ALA 1330.0045
VAL 1340.0053
GLU 1350.0066
THR 1360.0060
ASN 1370.0065
LEU 1380.0047
ALA 1390.0053
SER 1400.0041
LEU 1410.0028
GLU 1420.0033
ASN 1430.0026
PHE 1440.0020
PRO 1450.0024
ILE 1460.0032
GLY 1470.0041
HIS 1480.0055
LEU 1490.0057
LYS 1500.0068
THR 1510.0073
LEU 1520.0054
LYS 1530.0051
GLU 1540.0038
LEU 1550.0028
ASN 1560.0029
VAL 1570.0032
ALA 1580.0043
HIS 1590.0059
ASN 1600.0055
LEU 1610.0063
ILE 1620.0052
GLN 1630.0065
SER 1640.0060
PHE 1650.0052
LYS 1660.0055
LEU 1670.0044
PRO 1680.0044
GLU 1690.0054
TYR 1700.0044
PHE 1710.0043
SER 1720.0062
ASN 1730.0062
LEU 1740.0053
THR 1750.0068
ASN 1760.0065
LEU 1770.0045
GLU 1780.0042
HIS 1790.0028
LEU 1800.0021
ASP 1810.0022
LEU 1820.0033
SER 1830.0042
SER 1840.0057
ASN 1850.0057
LYS 1860.0069
ILE 1870.0063
GLN 1880.0077
SER 1890.0077
ILE 1900.0070
TYR 1910.0080
CYS 1920.0084
THR 1930.0082
ASP 1940.0065
LEU 1950.0063
ARG 1960.0072
VAL 1970.0062
LEU 1980.0061
HIS 1990.0078
GLN 2000.0080
MET 2010.0075
PRO 2020.0080
LEU 2030.0078
LEU 2040.0062
ASN 2050.0053
LEU 2060.0039
SER 2070.0027
LEU 2080.0026
ASP 2090.0027
LEU 2100.0039
SER 2110.0045
LEU 2120.0057
ASN 2130.0060
PRO 2140.0073
MET 2150.0071
ASN 2160.0084
PHE 2170.0084
ILE 2180.0075
GLN 2190.0086
PRO 2200.0090
GLY 2210.0089
ALA 2220.0077
PHE 2230.0069
LYS 2240.0081
GLU 2250.0081
ILE 2260.0067
ARG 2270.0060
LEU 2280.0046
HIS 2290.0040
LYS 2300.0029
LEU 2310.0032
THR 2320.0032
LEU 2330.0041
ARG 2340.0043
ASN 2350.0054
ASN 2360.0058
PHE 2370.0067
ASP 2380.0078
SER 2390.0079
LEU 2400.0073
ASN 2410.0082
VAL 2420.0080
MET 2430.0068
LYS 2440.0073
THR 2450.0080
CYS 2460.0069
ILE 2470.0064
GLN 2480.0076
GLY 2490.0075
LEU 2500.0064
ALA 2510.0073
GLY 2520.0075
LEU 2530.0062
GLU 2540.0058
VAL 2550.0046
HIS 2560.0041
ARG 2570.0030
LEU 2580.0032
VAL 2590.0029
LEU 2600.0037
GLY 2610.0041
GLU 2620.0049
PHE 2630.0055
ARG 2640.0060
ASN 2650.0069
GLU 2660.0068
GLY 2670.0074
ASN 2680.0068
LEU 2690.0067
GLU 2700.0075
LYS 2710.0069
PHE 2720.0059
ASP 2730.0061
LYS 2740.0056
SER 2750.0063
ALA 2760.0059
LEU 2770.0054
GLU 2780.0063
GLY 2790.0065
LEU 2800.0055
CYS 2810.0061
ASN 2820.0070
LEU 2830.0061
THR 2840.0057
ILE 2850.0046
GLU 2860.0043
GLU 2870.0031
PHE 2880.0029
ARG 2890.0026
LEU 2900.0032
ALA 2910.0033
TYR 2920.0042
LEU 2930.0046
ASP 2940.0056
TYR 2950.0056
TYR 2960.0052
LEU 2970.0045
ASP 2980.0045
GLY 2990.0039
ILE 3000.0036
ILE 3010.0038
ASP 3020.0045
LEU 3030.0044
PHE 3040.0039
ASN 3050.0043
CYS 3060.0047
LEU 3070.0040
THR 3080.0039
ASN 3090.0041
VAL 3100.0037
SER 3110.0034
SER 3120.0027
PHE 3130.0025
SER 3140.0024
LEU 3150.0027
VAL 3160.0031
SER 3170.0039
VAL 3180.0038
THR 3190.0042
ILE 3200.0037
GLU 3210.0039
ARG 3220.0036
VAL 3230.0031
LYS 3240.0028
ASP 3250.0028
PHE 3260.0025
SER 3270.0024
TYR 3280.0026
ASN 3290.0025
PHE 3300.0027
GLY 3310.0030
TRP 3320.0028
GLN 3330.0028
HIS 3340.0024
LEU 3350.0022
GLU 3360.0021
LEU 3370.0025
VAL 3380.0029
ASN 3390.0036
CYS 3400.0036
LYS 3410.0041
PHE 3420.0040
GLY 3430.0043
GLN 3440.0040
PHE 3450.0035
PRO 3460.0029
THR 3470.0029
LEU 3480.0024
LYS 3490.0022
LEU 3500.0020
LYS 3510.0020
SER 3520.0024
LEU 3530.0022
LYS 3540.0023
ARG 3550.0021
LEU 3560.0019
THR 3570.0020
PHE 3580.0025
THR 3590.0027
SER 3600.0034
ASN 3610.0036
LYS 3620.0045
GLY 3630.0046
GLY 3640.0045
ASN 3650.0043
ALA 3660.0045
PHE 3670.0041
SER 3680.0042
GLU 3690.0038
VAL 3700.0031
ASP 3710.0027
LEU 3720.0021
PRO 3730.0021
SER 3740.0019
LEU 3750.0019
GLU 3760.0020
PHE 3770.0017
LEU 3780.0018
ASP 3790.0019
LEU 3800.0024
SER 3810.0025
ARG 3820.0033
ASN 3830.0038
GLY 3840.0043
LEU 3850.0042
SER 3860.0049
PHE 3870.0048
LYS 3880.0057
GLY 3890.0057
CYS 3900.0046
CYS 3910.0041
SER 3920.0043
GLN 3930.0040
SER 3940.0045
ASP 3950.0041
PHE 3960.0032
GLY 3970.0033
THR 3980.0028
ILE 3990.0031
SER 4000.0026
LEU 4010.0023
LYS 4020.0021
TYR 4030.0015
LEU 4040.0016
ASP 4050.0015
LEU 4060.0022
SER 4070.0021
PHE 4080.0032
ASN 4090.0038
GLY 4100.0047
VAL 4110.0049
ILE 4120.0044
THR 4130.0053
MET 4140.0050
SER 4150.0061
SER 4160.0058
ASN 4170.0056
PHE 4180.0045
LEU 4190.0054
GLY 4200.0048
LEU 4210.0038
GLU 4220.0046
GLN 4230.0038
LEU 4240.0029
GLU 4250.0032
HIS 4260.0022
LEU 4270.0015
ASP 4280.0007
PHE 4290.0014
GLN 4300.0018
HIS 4310.0030
SER 4320.0032
ASN 4330.0039
LEU 4340.0036
LYS 4350.0048
GLN 4360.0054
MET 4370.0045
SER 4380.0053
GLU 4390.0067
PHE 4400.0067
SER 4410.0061
VAL 4420.0049
PHE 4430.0045
LEU 4440.0060
SER 4450.0060
LEU 4460.0049
ARG 4470.0060
ASN 4480.0053
LEU 4490.0041
ILE 4500.0045
TYR 4510.0033
LEU 4520.0023
ASP 4530.0013
ILE 4540.0008
SER 4550.0015
HIS 4560.0025
THR 4570.0023
HIS 4580.0031
THR 4590.0026
ARG 4600.0031
VAL 4610.0032
ALA 4620.0048
PHE 4630.0057
ASN 4640.0060
GLY 4650.0065
ILE 4660.0050
PHE 4670.0049
ASN 4680.0066
GLY 4690.0069
LEU 4700.0058
SER 4710.0073
SER 4720.0068
LEU 4730.0055
GLU 4740.0060
VAL 4750.0048
LEU 4760.0036
LYS 4770.0026
MET 4780.0015
ALA 4790.0022
GLY 4800.0024
ASN 4810.0014
SER 4820.0016
PHE 4830.0020
GLN 4840.0034
GLU 4850.0030
ASN 4860.0013
PHE 4870.0026
LEU 4880.0033
PRO 4890.0049
ASP 4900.0064
ILE 4910.0057
PHE 4920.0062
THR 4930.0081
GLU 4940.0082
LEU 4950.0071
ARG 4960.0088
ASN 4970.0084
LEU 4980.0071
THR 4990.0077
PHE 5000.0064
LEU 5010.0052
ASP 5020.0042
LEU 5030.0031
SER 5040.0037
GLN 5050.0034
CYS 5060.0016
GLN 5070.0020
LEU 5080.0015
GLU 5090.0016
GLN 5100.0027
LEU 5110.0043
SER 5120.0058
PRO 5130.0074
THR 5140.0082
ALA 5150.0067
PHE 5160.0075
ASN 5170.0094
SER 5180.0097
LEU 5190.0089
SER 5200.0108
SER 5210.0103
LEU 5220.0089
GLN 5230.0096
VAL 5240.0084
LEU 5250.0070
ASN 5260.0061
MET 5270.0051
SER 5280.0058
HIS 5290.0053
ASN 5300.0038
ASN 5310.0033
PHE 5320.0039
PHE 5330.0044
SER 5340.0055
LEU 5350.0070
ASP 5360.0072
THR 5370.0089
PHE 5380.0092
PRO 5390.0082
TYR 5400.0093
LYS 5410.0112
CYS 5420.0113
LEU 5430.0107
ASN 5440.0125
SER 5450.0119
LEU 5460.0108
GLN 5470.0116
VAL 5480.0102
LEU 5490.0089
ASP 5500.0081
TYR 5510.0073
SER 5520.0081
LEU 5530.0076
ASN 5540.0061
HIS 5550.0060
ILE 5560.0066
MET 5570.0072
THR 5580.0071
SER 5590.0076
LYS 5600.0065
LYS 5610.0078
GLN 5620.0096
GLU 5630.0105
LEU 5640.0108
GLN 5650.0127
HIS 5660.0120
PHE 5670.0118
PRO 5680.0128
SER 5690.0146
SER 5700.0139
LEU 5710.0127
ALA 5720.0135
PHE 5730.0122
LEU 5740.0110
ASN 5750.0103
LEU 5760.0098
THR 5770.0106
GLN 5780.0101
ASN 5790.0087
ASP 5800.0085
PHE 5810.0092
ALA 5820.0089
CYS 5830.0108
THR 5840.0100
CYS 5850.0107
GLU 5860.0088
HIS 5870.0092
GLN 5880.0113
SER 5890.0113
PHE 5900.0105
LEU 5910.0118
GLN 5920.0135
TRP 5930.0130
ILE 5940.0128
LYS 5950.0149
ASP 5960.0154
GLN 5970.0145
ARG 5980.0152
GLN 5990.0158
LEU 6000.0139
LEU 6010.0132
VAL 6020.0132
GLU 6030.0137
VAL 6040.0145
GLU 6050.0150
ARG 6060.0131
MET 6070.0124
GLU 6080.0126
CYS 6090.0118
ALA 6100.0106
THR 6110.0096
PRO 6120.0109
SER 6130.0124
ASP 6140.0140
LYS 6150.0137
GLN 6160.0132
GLY 6170.0141
MET 6180.0149
PRO 6190.0147
VAL 6200.0134
LEU 6210.0152
SER 6220.0164
LEU 6230.0151
ASN 6240.0157
ILE 6250.0147
THR 6260.0154
CYS 6270.0140
GLU 10.0483
ALA 20.0454
ALA 30.0414
ALA 40.0384
LYS 50.0362
MET 60.0332
GLN 70.0290
ARG 80.0273
LEU 90.0247
VAL 100.0212
LEU 110.0182
LEU 120.0168
LEU 130.0145
ALA 140.0115
ILE 150.0103
SER 160.0081
LEU 170.0065
LEU 180.0051
LEU 190.0052
TYR 200.0041
GLN 210.0026
ASP 220.0024
LEU 230.0026
PRO 240.0020
VAL 250.0030
ARG 260.0056
SER 270.0047
GLU 280.0056
PHE 290.0055
GLU 300.0042
LEU 310.0041
ASP 320.0048
ARG 330.0041
ILE 340.0034
CYS 350.0041
GLY 360.0034
TYR 370.0023
GLY 380.0025
THR 390.0033
ALA 400.0041
ARG 410.0044
CYS 420.0057
ARG 430.0066
LYS 440.0081
LYS 450.0082
CYS 460.0076
ARG 470.0067
SER 480.0071
GLN 490.0060
GLU 500.0064
TYR 510.0075
ARG 520.0078
ILE 530.0075
GLY 540.0078
ARG 550.0079
CYS 560.0069
PRO 570.0073
ASN 580.0079
THR 590.0086
TYR 600.0078
ALA 610.0078
CYS 620.0066
CYS 630.0061
LEU 640.0054
ARG 650.0050
LYS 660.0066
TRP 670.0063
ASP 680.0057
GLU 690.0069
SER 700.0059
LEU 710.0064
LEU 720.0083
ASN 730.0082
ARG 740.0078
THR 750.0093
LYS 760.0110
PRO 770.0124
GLU 780.0122
ALA 790.0145
ALA 800.0152
ALA 810.0160
LYS 820.0140
LYS 830.0124
GLU 840.0117
MET 850.0098
ASN 860.0103
LEU 870.0085
SER 880.0092
VAL 890.0077
GLY 900.0085
LEU 910.0077
GLY 920.0081
GLY 930.0096
GLY 940.0113
SER 950.0104
ASN 960.0105
LEU 970.0095
SER 980.0104
VAL 990.0095
GLY 1000.0108
LEU 1010.0099
GLY 1020.0119
GLU 1030.0117
ILE 1040.0124
GLY 1050.0122
GLY 1060.0100
GLY 1070.0100
SER 1080.0086
LYS 1090.0085
LEU 1100.0084
LEU 1110.0074
ASP 1120.0084
ILE 1130.0077
ASN 1140.0089
LEU 1150.0077
GLY 1160.0086
ARG 1170.0086
GLY 1180.0070
GLY 1190.0063
GLY 1200.0067
SER 1210.0063
MET 1220.0070
VAL 1230.0067
ASP 1240.0077
LEU 1250.0073
THR 1260.0087
PHE 1270.0085
GLY 1280.0101
GLY 1290.0108
VAL 1300.0103
GLY 1310.0114
GLY 1320.0100
GLY 1330.0101
SER 1340.0085
THR 1350.0089
PHE 1360.0078
THR 1370.0081
PHE 1380.0078
PHE 1390.0085
PRO 1400.0086
LEU 1410.0089
VAL 1420.0104
ILE 1430.0108
GLY 1440.0127
GLY 1450.0134
GLY 1460.0134
SER 1470.0120
ASP 1480.0099
ALA 1490.0095
MET 1500.0079
TYR 1510.0082
LEU 1520.0067
GLY 1530.0069
PHE 1540.0061
ALA 1550.0066
ALA 1560.0070
GLY 1570.0083
GLY 1580.0093
GLY 1590.0108
SER 1600.0119
ALA 1610.0121
GLY 1620.0124
GLY 1630.0123
GLU 1640.0110
ASN 1650.0099
HIS 1660.0093
VAL 1670.0085
ALA 1680.0086
PHE 1690.0078
GLY 1700.0085
PRO 1710.0087
GLY 1720.0096
PRO 1730.0100
GLY 1740.0101
VAL 1750.0095
ASP 1760.0098
LEU 1770.0100
THR 1780.0109
PHE 1790.0114
GLY 1800.0126
GLY 1810.0129
VAL 1820.0127
GLN 1830.0117
PHE 1840.0113
ALA 1850.0109
MET 1860.0101
VAL 1870.0084
ASN 1880.0083
ASN 1890.0079
GLY 1900.0083
PRO 1910.0261
GLY 1920.0514
PRO 1930.0791
GLY 1940.0995
GLU 1950.0781
SER 1960.0799
PHE 1970.0625
THR 1980.0533
ALA 1990.0408
GLN 2000.0250
PRO 2010.0237
ALA 2020.0101
ASP 2030.0034
MET 2040.0123
GLN 2050.0192
ALA 2060.0148
GLY 2070.0145
ILE 2080.0087
LYS 2090.0082
GLY 2100.0168
PRO 2110.0248
GLY 2120.0371
PRO 2130.0446
GLY 2140.0443
GLY 2150.0332
SER 2160.0267
ILE 2170.0188
GLN 2180.0191
VAL 2190.0137
ILE 2200.0141
ASN 2210.0143
GLY 2220.0133
SER 2230.0162
THR 2240.0170
ILE 2250.0176
GLY 2260.0205
THR 2270.0217
GLY 2280.0219
SER 2290.0214
LYS 2300.0191
LYS 2310.0163
THR 2320.0146
ILE 2330.0138
LEU 2340.0120
ILE 2350.0112
TYR 2360.0105
SER 2370.0096
ILE 2380.0087
ILE 2390.0075
GLY 2400.0069
VAL 2410.0071
LYS 2420.0060
LYS 2430.0067
GLY 2440.0074
THR 2450.0067
LEU 2460.0077
ALA 2470.0071
TRP 2480.0080
ALA 2490.0076
ARG 2500.0087
THR 2510.0091
GLY 2520.0108
PHE 2530.0122
SER 2540.0138
PRO 2550.0156
ALA 2560.0164
LYS 2570.0181
LYS 2580.0198
LEU 2590.0208
ASN 2600.0228
ALA 2610.0232
GLY 2620.0202
VAL 2630.0182
VAL 2640.0159
ARG 2650.0132
VAL 2660.0116
PHE 2670.0111
PHE 2680.0111
LEU 2690.0108
ASN 2700.0106
GLN 2710.0080
LYS 2720.0080
LYS 2730.0100
ALA 2740.0092
LYS 2750.0076
ASP 2760.0100
VAL 2770.0116
LEU 2780.0107
ARG 2790.0111
LYS 2800.0130
THR 2810.0151
SER 2820.0145
ARG 2830.0167
PRO 2840.0180
MET 2850.0181
VAL 2860.0211
ASP 2870.0259
LEU 2880.0274
THR 2890.0333
PHE 2900.0385
GLY 2910.0476
GLY 2920.0525

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.