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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 16  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.1120
GLU 270.0070
PRO 280.0068
CYS 290.0069
VAL 300.0075
GLU 310.0080
VAL 320.0081
VAL 330.0085
PRO 340.0086
ASN 350.0083
ILE 360.0081
THR 370.0077
TYR 380.0072
GLN 390.0068
CYS 400.0062
MET 410.0060
GLU 420.0056
LEU 430.0057
ASN 440.0049
PHE 450.0049
TYR 460.0042
LYS 470.0045
ILE 480.0051
PRO 490.0058
ASP 500.0061
ASN 510.0066
LEU 520.0070
PRO 530.0075
PHE 540.0075
SER 550.0079
THR 560.0075
LYS 570.0075
ASN 580.0071
LEU 590.0065
ASP 600.0061
LEU 610.0055
SER 620.0052
PHE 630.0048
ASN 640.0046
PRO 650.0040
LEU 660.0040
ARG 670.0033
HIS 680.0033
LEU 690.0039
GLY 700.0040
SER 710.0046
TYR 720.0053
SER 730.0050
PHE 740.0057
PHE 750.0061
SER 760.0064
PHE 770.0067
PRO 780.0071
GLU 790.0074
LEU 800.0069
GLN 810.0070
VAL 820.0065
LEU 830.0059
ASP 840.0056
LEU 850.0049
SER 860.0047
ARG 870.0040
CYS 880.0040
GLU 890.0034
ILE 900.0033
GLN 910.0027
THR 920.0030
ILE 930.0037
GLU 940.0038
ASP 950.0044
GLY 960.0050
ALA 970.0048
TYR 980.0054
GLN 990.0058
SER 1000.0063
LEU 1010.0064
SER 1020.0068
HIS 1030.0071
LEU 1040.0065
SER 1050.0066
THR 1060.0062
LEU 1070.0055
ILE 1080.0051
LEU 1090.0044
THR 1100.0043
GLY 1110.0038
ASN 1120.0035
PRO 1130.0029
ILE 1140.0029
GLN 1150.0024
SER 1160.0027
LEU 1170.0034
ALA 1180.0038
LEU 1190.0043
GLY 1200.0047
ALA 1210.0045
PHE 1220.0050
SER 1230.0054
GLY 1240.0060
LEU 1250.0060
SER 1260.0066
SER 1270.0068
LEU 1280.0062
GLN 1290.0063
LYS 1300.0059
LEU 1310.0053
VAL 1320.0049
ALA 1330.0043
VAL 1340.0041
GLU 1350.0036
THR 1360.0034
ASN 1370.0032
LEU 1380.0034
ALA 1390.0031
SER 1400.0035
LEU 1410.0040
GLU 1420.0039
ASN 1430.0037
PHE 1440.0041
PRO 1450.0045
ILE 1460.0049
GLY 1470.0052
HIS 1480.0056
LEU 1490.0058
LYS 1500.0062
THR 1510.0064
LEU 1520.0060
LYS 1530.0061
GLU 1540.0058
LEU 1550.0052
ASN 1560.0050
VAL 1570.0044
ALA 1580.0043
HIS 1590.0039
ASN 1600.0036
LEU 1610.0032
ILE 1620.0036
GLN 1630.0034
SER 1640.0036
PHE 1650.0040
LYS 1660.0041
LEU 1670.0044
PRO 1680.0044
GLU 1690.0048
TYR 1700.0050
PHE 1710.0051
SER 1720.0055
ASN 1730.0058
LEU 1740.0057
THR 1750.0062
ASN 1760.0063
LEU 1770.0058
GLU 1780.0059
HIS 1790.0056
LEU 1800.0051
ASP 1810.0049
LEU 1820.0045
SER 1830.0045
SER 1840.0042
ASN 1850.0039
LYS 1860.0035
ILE 1870.0038
GLN 1880.0036
SER 1890.0036
ILE 1900.0039
TYR 1910.0039
CYS 1920.0041
THR 1930.0041
ASP 1940.0041
LEU 1950.0045
ARG 1960.0046
VAL 1970.0049
LEU 1980.0050
HIS 1990.0051
GLN 2000.0053
MET 2010.0056
PRO 2020.0057
LEU 2030.0060
LEU 2040.0058
ASN 2050.0058
LEU 2060.0055
SER 2070.0053
LEU 2080.0050
ASP 2090.0049
LEU 2100.0045
SER 2110.0045
LEU 2120.0043
ASN 2130.0041
PRO 2140.0039
MET 2150.0039
ASN 2160.0036
PHE 2170.0036
ILE 2180.0038
GLN 2190.0038
PRO 2200.0039
GLY 2210.0041
ALA 2220.0042
PHE 2230.0044
LYS 2240.0045
GLU 2250.0048
ILE 2260.0049
ARG 2270.0051
LEU 2280.0051
HIS 2290.0053
LYS 2300.0052
LEU 2310.0049
THR 2320.0048
LEU 2330.0045
ARG 2340.0046
ASN 2350.0044
ASN 2360.0042
PHE 2370.0040
ASP 2380.0039
SER 2390.0038
LEU 2400.0038
ASN 2410.0037
VAL 2420.0037
MET 2430.0039
LYS 2440.0038
THR 2450.0037
CYS 2460.0039
ILE 2470.0041
GLN 2480.0039
GLY 2490.0040
LEU 2500.0042
ALA 2510.0042
GLY 2520.0044
LEU 2530.0046
GLU 2540.0048
VAL 2550.0049
HIS 2560.0051
ARG 2570.0050
LEU 2580.0048
VAL 2590.0048
LEU 2600.0046
GLY 2610.0046
GLU 2620.0046
PHE 2630.0047
ARG 2640.0047
ASN 2650.0048
GLU 2660.0047
GLY 2670.0044
ASN 2680.0044
LEU 2690.0042
GLU 2700.0041
LYS 2710.0040
PHE 2720.0041
ASP 2730.0040
LYS 2740.0040
SER 2750.0039
ALA 2760.0040
LEU 2770.0041
GLU 2780.0040
GLY 2790.0040
LEU 2800.0042
CYS 2810.0042
ASN 2820.0042
LEU 2830.0044
THR 2840.0046
ILE 2850.0047
GLU 2860.0049
GLU 2870.0049
PHE 2880.0048
ARG 2890.0049
LEU 2900.0047
ALA 2910.0049
TYR 2920.0047
LEU 2930.0046
ASP 2940.0046
TYR 2950.0044
TYR 2960.0044
LEU 2970.0044
ASP 2980.0043
GLY 2990.0043
ILE 3000.0042
ILE 3010.0041
ASP 3020.0040
LEU 3030.0041
PHE 3040.0043
ASN 3050.0041
CYS 3060.0042
LEU 3070.0043
THR 3080.0042
ASN 3090.0043
VAL 3100.0045
SER 3110.0046
SER 3120.0048
PHE 3130.0047
SER 3140.0048
LEU 3150.0048
VAL 3160.0049
SER 3170.0048
VAL 3180.0047
THR 3190.0046
ILE 3200.0045
GLU 3210.0045
ARG 3220.0043
VAL 3230.0044
LYS 3240.0043
ASP 3250.0042
PHE 3260.0043
SER 3270.0042
TYR 3280.0041
ASN 3290.0041
PHE 3300.0042
GLY 3310.0043
TRP 3320.0044
GLN 3330.0045
HIS 3340.0047
LEU 3350.0047
GLU 3360.0050
LEU 3370.0047
VAL 3380.0048
ASN 3390.0048
CYS 3400.0048
LYS 3410.0047
PHE 3420.0046
GLY 3430.0046
GLN 3440.0046
PHE 3450.0046
PRO 3460.0045
THR 3470.0044
LEU 3480.0044
LYS 3490.0043
LEU 3500.0043
LYS 3510.0043
SER 3520.0041
LEU 3530.0044
LYS 3540.0045
ARG 3550.0048
LEU 3560.0049
THR 3570.0048
PHE 3580.0047
THR 3590.0047
SER 3600.0046
ASN 3610.0046
LYS 3620.0047
GLY 3630.0047
GLY 3640.0046
ASN 3650.0046
ALA 3660.0046
PHE 3670.0045
SER 3680.0045
GLU 3690.0045
VAL 3700.0045
ASP 3710.0045
LEU 3720.0044
PRO 3730.0041
SER 3740.0043
LEU 3750.0047
GLU 3760.0049
PHE 3770.0048
LEU 3780.0048
ASP 3790.0047
LEU 3800.0046
SER 3810.0046
ARG 3820.0040
ASN 3830.0043
GLY 3840.0041
LEU 3850.0044
SER 3860.0045
PHE 3870.0045
LYS 3880.0047
GLY 3890.0050
CYS 3900.0049
CYS 3910.0050
SER 3920.0050
GLN 3930.0051
SER 3940.0049
ASP 3950.0047
PHE 3960.0047
GLY 3970.0047
THR 3980.0048
ILE 3990.0047
SER 4000.0048
LEU 4010.0051
LYS 4020.0052
TYR 4030.0049
LEU 4040.0048
ASP 4050.0045
LEU 4060.0044
SER 4070.0038
PHE 4080.0034
ASN 4090.0037
GLY 4100.0038
VAL 4110.0042
ILE 4120.0043
THR 4130.0046
MET 4140.0049
SER 4150.0053
SER 4160.0055
ASN 4170.0055
PHE 4180.0054
LEU 4190.0058
GLY 4200.0059
LEU 4210.0056
GLU 4220.0059
GLN 4230.0058
LEU 4240.0054
GLU 4250.0053
HIS 4260.0048
LEU 4270.0047
ASP 4280.0040
PHE 4290.0038
GLN 4300.0031
HIS 4310.0027
SER 4320.0034
ASN 4330.0036
LEU 4340.0040
LYS 4350.0044
GLN 4360.0048
MET 4370.0047
SER 4380.0049
GLU 4390.0055
PHE 4400.0057
SER 4410.0056
VAL 4420.0053
PHE 4430.0053
LEU 4440.0059
SER 4450.0062
LEU 4460.0058
ARG 4470.0062
ASN 4480.0060
LEU 4490.0054
ILE 4500.0052
TYR 4510.0046
LEU 4520.0044
ASP 4530.0036
ILE 4540.0034
SER 4550.0026
HIS 4560.0023
THR 4570.0029
HIS 4580.0030
THR 4590.0036
ARG 4600.0038
VAL 4610.0042
ALA 4620.0047
PHE 4630.0052
ASN 4640.0052
GLY 4650.0057
ILE 4660.0052
PHE 4670.0052
ASN 4680.0059
GLY 4690.0063
LEU 4700.0058
SER 4710.0063
SER 4720.0062
LEU 4730.0054
GLU 4740.0051
VAL 4750.0044
LEU 4760.0040
LYS 4770.0032
MET 4780.0029
ALA 4790.0020
GLY 4800.0017
ASN 4810.0025
SER 4820.0028
PHE 4830.0034
GLN 4840.0042
GLU 4850.0040
ASN 4860.0031
PHE 4870.0034
LEU 4880.0034
PRO 4890.0043
ASP 4900.0049
ILE 4910.0050
PHE 4920.0050
THR 4930.0058
GLU 4940.0062
LEU 4950.0056
ARG 4960.0061
ASN 4970.0061
LEU 4980.0052
THR 4990.0050
PHE 5000.0041
LEU 5010.0036
ASP 5020.0027
LEU 5030.0022
SER 5040.0013
GLN 5050.0009
CYS 5060.0018
GLN 5070.0018
LEU 5080.0021
GLU 5090.0022
GLN 5100.0027
LEU 5110.0030
SER 5120.0039
PRO 5130.0039
THR 5140.0047
ALA 5150.0043
PHE 5160.0043
ASN 5170.0051
SER 5180.0058
LEU 5190.0053
SER 5200.0059
SER 5210.0059
LEU 5220.0050
GLN 5230.0049
VAL 5240.0040
LEU 5250.0032
ASN 5260.0023
MET 5270.0016
SER 5280.0009
HIS 5290.0003
ASN 5300.0007
ASN 5310.0015
PHE 5320.0011
PHE 5330.0014
SER 5340.0007
LEU 5350.0007
ASP 5360.0017
THR 5370.0025
PHE 5380.0032
PRO 5390.0036
TYR 5400.0037
LYS 5410.0044
CYS 5420.0052
LEU 5430.0050
ASN 5440.0058
SER 5450.0058
LEU 5460.0048
GLN 5470.0049
VAL 5480.0040
LEU 5490.0030
ASP 5500.0023
TYR 5510.0014
SER 5520.0017
LEU 5530.0016
ASN 5540.0009
HIS 5550.0016
ILE 5560.0010
MET 5570.0018
THR 5580.0011
SER 5590.0002
LYS 5600.0012
LYS 5610.0016
GLN 5620.0013
GLU 5630.0023
LEU 5640.0021
GLN 5650.0031
HIS 5660.0036
PHE 5670.0037
PRO 5680.0047
SER 5690.0055
SER 5700.0057
LEU 5710.0047
ALA 5720.0051
PHE 5730.0044
LEU 5740.0033
ASN 5750.0029
LEU 5760.0023
THR 5770.0030
GLN 5780.0030
ASN 5790.0022
ASP 5800.0028
PHE 5810.0027
ALA 5820.0031
CYS 5830.0037
THR 5840.0038
CYS 5850.0035
GLU 5860.0027
HIS 5870.0020
GLN 5880.0023
SER 5890.0014
PHE 5900.0014
LEU 5910.0026
GLN 5920.0029
TRP 5930.0026
ILE 5940.0030
LYS 5950.0040
ASP 5960.0041
GLN 5970.0041
ARG 5980.0047
GLN 5990.0054
LEU 6000.0045
LEU 6010.0041
VAL 6020.0045
GLU 6030.0048
VAL 6040.0050
GLU 6050.0054
ARG 6060.0045
MET 6070.0039
GLU 6080.0043
CYS 6090.0043
ALA 6100.0043
THR 6110.0045
PRO 6120.0053
SER 6130.0064
ASP 6140.0068
LYS 6150.0059
GLN 6160.0057
GLY 6170.0057
MET 6180.0058
PRO 6190.0052
VAL 6200.0043
LEU 6210.0048
SER 6220.0057
LEU 6230.0051
ASN 6240.0053
ILE 6250.0043
THR 6260.0047
CYS 6270.0045
GLU 10.1120
ALA 20.1046
ALA 30.0975
ALA 40.0895
LYS 50.0813
MET 60.0753
GLN 70.0671
ARG 80.0605
LEU 90.0528
VAL 100.0467
LEU 110.0399
LEU 120.0332
LEU 130.0286
ALA 140.0233
ILE 150.0191
SER 160.0110
LEU 170.0096
LEU 180.0073
LEU 190.0055
TYR 200.0026
GLN 210.0009
ASP 220.0021
LEU 230.0027
PRO 240.0047
VAL 250.0050
ARG 260.0041
SER 270.0044
GLU 280.0049
PHE 290.0051
GLU 300.0050
LEU 310.0052
ASP 320.0057
ARG 330.0058
ILE 340.0060
CYS 350.0065
GLY 360.0062
TYR 370.0060
GLY 380.0061
THR 390.0067
ALA 400.0067
ARG 410.0065
CYS 420.0068
ARG 430.0070
LYS 440.0074
LYS 450.0076
CYS 460.0076
ARG 470.0072
SER 480.0073
GLN 490.0069
GLU 500.0072
TYR 510.0078
ARG 520.0080
ILE 530.0080
GLY 540.0081
ARG 550.0080
CYS 560.0074
PRO 570.0073
ASN 580.0072
THR 590.0079
TYR 600.0076
ALA 610.0078
CYS 620.0074
CYS 630.0073
LEU 640.0071
ARG 650.0069
LYS 660.0072
TRP 670.0069
ASP 680.0063
GLU 690.0060
SER 700.0055
LEU 710.0060
LEU 720.0060
ASN 730.0051
ARG 740.0049
THR 750.0054
LYS 760.0055
PRO 770.0052
GLU 780.0032
ALA 790.0050
ALA 800.0068
ALA 810.0165
LYS 820.0161
LYS 830.0143
GLU 840.0128
MET 850.0120
ASN 860.0101
LEU 870.0090
SER 880.0069
VAL 890.0057
GLY 900.0054
LEU 910.0051
GLY 920.0070
GLY 930.0073
GLY 940.0056
SER 950.0044
ASN 960.0040
LEU 970.0046
SER 980.0065
VAL 990.0082
GLY 1000.0106
LEU 1010.0124
GLY 1020.0135
GLU 1030.0148
ILE 1040.0149
GLY 1050.0161
GLY 1060.0161
GLY 1070.0147
SER 1080.0138
LYS 1090.0127
LEU 1100.0115
LEU 1110.0101
ASP 1120.0081
ILE 1130.0064
ASN 1140.0050
LEU 1150.0046
GLY 1160.0051
ARG 1170.0061
GLY 1180.0074
GLY 1190.0084
GLY 1200.0095
SER 1210.0077
MET 1220.0090
VAL 1230.0080
ASP 1240.0097
LEU 1250.0104
THR 1260.0114
PHE 1270.0133
GLY 1280.0140
GLY 1290.0168
VAL 1300.0184
GLY 1310.0224
GLY 1320.0234
GLY 1330.0239
SER 1340.0218
THR 1350.0215
PHE 1360.0185
THR 1370.0186
PHE 1380.0164
PHE 1390.0162
PRO 1400.0146
LEU 1410.0129
VAL 1420.0126
ILE 1430.0104
GLY 1440.0098
GLY 1450.0093
GLY 1460.0072
SER 1470.0060
ASP 1480.0060
ALA 1490.0067
MET 1500.0085
TYR 1510.0101
LEU 1520.0117
GLY 1530.0140
PHE 1540.0157
ALA 1550.0183
ALA 1560.0205
GLY 1570.0230
GLY 1580.0258
GLY 1590.0266
SER 1600.0270
ALA 1610.0252
GLY 1620.0234
GLY 1630.0209
GLU 1640.0178
ASN 1650.0170
HIS 1660.0147
VAL 1670.0138
ALA 1680.0131
PHE 1690.0119
GLY 1700.0133
PRO 1710.0138
GLY 1720.0164
PRO 1730.0166
GLY 1740.0172
VAL 1750.0155
ASP 1760.0170
LEU 1770.0177
THR 1780.0190
PHE 1790.0207
GLY 1800.0224
GLY 1810.0230
VAL 1820.0238
GLN 1830.0221
PHE 1840.0216
ALA 1850.0212
MET 1860.0199
VAL 1870.0214
ASN 1880.0194
ASN 1890.0199
GLY 1900.0186
PRO 1910.0191
GLY 1920.0232
PRO 1930.0247
GLY 1940.0225
GLU 1950.0165
SER 1960.0149
PHE 1970.0116
THR 1980.0117
ALA 1990.0129
GLN 2000.0116
PRO 2010.0152
ALA 2020.0121
ASP 2030.0058
MET 2040.0103
GLN 2050.0077
ALA 2060.0110
GLY 2070.0185
ILE 2080.0137
LYS 2090.0208
GLY 2100.0202
PRO 2110.0157
GLY 2120.0214
PRO 2130.0163
GLY 2140.0058
GLY 2150.0053
SER 2160.0091
ILE 2170.0095
GLN 2180.0104
VAL 2190.0138
ILE 2200.0122
ASN 2210.0116
GLY 2220.0112
SER 2230.0114
THR 2240.0124
ILE 2250.0135
GLY 2260.0157
THR 2270.0169
GLY 2280.0168
SER 2290.0168
LYS 2300.0153
LYS 2310.0141
THR 2320.0127
ILE 2330.0121
LEU 2340.0107
ILE 2350.0101
TYR 2360.0079
SER 2370.0065
ILE 2380.0045
ILE 2390.0030
GLY 2400.0015
VAL 2410.0014
LYS 2420.0023
LYS 2430.0033
GLY 2440.0042
THR 2450.0038
LEU 2460.0040
ALA 2470.0038
TRP 2480.0053
ALA 2490.0049
ARG 2500.0069
THR 2510.0074
GLY 2520.0081
PHE 2530.0089
SER 2540.0094
PRO 2550.0107
ALA 2560.0110
LYS 2570.0120
LYS 2580.0145
LEU 2590.0156
ASN 2600.0180
ALA 2610.0202
GLY 2620.0173
VAL 2630.0156
VAL 2640.0140
ARG 2650.0111
VAL 2660.0107
PHE 2670.0082
PHE 2680.0078
LEU 2690.0054
ASN 2700.0041
GLN 2710.0019
LYS 2720.0020
LYS 2730.0035
ALA 2740.0031
LYS 2750.0022
ASP 2760.0039
VAL 2770.0047
LEU 2780.0040
ARG 2790.0043
LYS 2800.0057
THR 2810.0068
SER 2820.0067
ARG 2830.0090
PRO 2840.0108
MET 2850.0120
VAL 2860.0142
ASP 2870.0227
LEU 2880.0266
THR 2890.0351
PHE 2900.0428
GLY 2910.0540
GLY 2920.0620

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.