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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 17  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0614
GLU 270.0103
PRO 280.0101
CYS 290.0093
VAL 300.0088
GLU 310.0086
VAL 320.0078
VAL 330.0078
PRO 340.0085
ASN 350.0088
ILE 360.0081
THR 370.0078
TYR 380.0083
GLN 390.0082
CYS 400.0088
MET 410.0085
GLU 420.0089
LEU 430.0096
ASN 440.0100
PHE 450.0100
TYR 460.0104
LYS 470.0102
ILE 480.0098
PRO 490.0100
ASP 500.0105
ASN 510.0105
LEU 520.0098
PRO 530.0097
PHE 540.0096
SER 550.0089
THR 560.0085
LYS 570.0078
ASN 580.0075
LEU 590.0079
ASP 600.0078
LEU 610.0083
SER 620.0077
PHE 630.0083
ASN 640.0090
PRO 650.0095
LEU 660.0094
ARG 670.0094
HIS 680.0096
LEU 690.0093
GLY 700.0098
SER 710.0098
TYR 720.0098
SER 730.0097
PHE 740.0093
PHE 750.0098
SER 760.0099
PHE 770.0092
PRO 780.0091
GLU 790.0085
LEU 800.0081
GLN 810.0073
VAL 820.0070
LEU 830.0074
ASP 840.0072
LEU 850.0076
SER 860.0073
ARG 870.0075
CYS 880.0081
GLU 890.0085
ILE 900.0085
GLN 910.0088
THR 920.0090
ILE 930.0088
GLU 940.0092
ASP 950.0091
GLY 960.0091
ALA 970.0091
TYR 980.0087
GLN 990.0089
SER 1000.0091
LEU 1010.0084
SER 1020.0082
HIS 1030.0078
LEU 1040.0075
SER 1050.0067
THR 1060.0066
LEU 1070.0068
ILE 1080.0068
LEU 1090.0071
THR 1100.0068
GLY 1110.0073
ASN 1120.0078
PRO 1130.0081
ILE 1140.0081
GLN 1150.0086
SER 1160.0087
LEU 1170.0083
ALA 1180.0086
LEU 1190.0082
GLY 1200.0086
ALA 1210.0084
PHE 1220.0079
SER 1230.0083
GLY 1240.0084
LEU 1250.0078
SER 1260.0076
SER 1270.0071
LEU 1280.0068
GLN 1290.0061
LYS 1300.0059
LEU 1310.0063
VAL 1320.0062
ALA 1330.0065
VAL 1340.0064
GLU 1350.0069
THR 1360.0072
ASN 1370.0076
LEU 1380.0071
ALA 1390.0071
SER 1400.0066
LEU 1410.0063
GLU 1420.0066
ASN 1430.0073
PHE 1440.0071
PRO 1450.0074
ILE 1460.0069
GLY 1470.0068
HIS 1480.0073
LEU 1490.0069
LYS 1500.0065
THR 1510.0063
LEU 1520.0060
LYS 1530.0053
GLU 1540.0052
LEU 1550.0056
ASN 1560.0056
VAL 1570.0060
ALA 1580.0058
HIS 1590.0064
ASN 1600.0066
LEU 1610.0068
ILE 1620.0062
GLN 1630.0060
SER 1640.0054
PHE 1650.0047
LYS 1660.0049
LEU 1670.0051
PRO 1680.0057
GLU 1690.0059
TYR 1700.0063
PHE 1710.0055
SER 1720.0055
ASN 1730.0062
LEU 1740.0057
THR 1750.0054
ASN 1760.0052
LEU 1770.0049
GLU 1780.0042
HIS 1790.0043
LEU 1800.0046
ASP 1810.0049
LEU 1820.0051
SER 1830.0051
SER 1840.0058
ASN 1850.0060
LYS 1860.0060
ILE 1870.0053
GLN 1880.0051
SER 1890.0044
ILE 1900.0038
TYR 1910.0036
CYS 1920.0031
THR 1930.0039
ASP 1940.0042
LEU 1950.0037
ARG 1960.0041
VAL 1970.0046
LEU 1980.0039
HIS 1990.0036
GLN 2000.0045
MET 2010.0044
PRO 2020.0037
LEU 2030.0040
LEU 2040.0040
ASN 2050.0034
LEU 2060.0034
SER 2070.0032
LEU 2080.0035
ASP 2090.0039
LEU 2100.0041
SER 2110.0045
LEU 2120.0053
ASN 2130.0052
PRO 2140.0054
MET 2150.0046
ASN 2160.0046
PHE 2170.0039
ILE 2180.0032
GLN 2190.0027
PRO 2200.0019
GLY 2210.0017
ALA 2220.0024
PHE 2230.0020
LYS 2240.0016
GLU 2250.0020
ILE 2260.0022
ARG 2270.0021
LEU 2280.0022
HIS 2290.0021
LYS 2300.0022
LEU 2310.0025
THR 2320.0031
LEU 2330.0035
ARG 2340.0041
ASN 2350.0049
ASN 2360.0047
PHE 2370.0049
ASP 2380.0057
SER 2390.0055
LEU 2400.0050
ASN 2410.0047
VAL 2420.0045
MET 2430.0040
LYS 2440.0036
THR 2450.0033
CYS 2460.0032
ILE 2470.0026
GLN 2480.0022
GLY 2490.0022
LEU 2500.0018
ALA 2510.0012
GLY 2520.0010
LEU 2530.0012
GLU 2540.0011
VAL 2550.0012
HIS 2560.0011
ARG 2570.0014
LEU 2580.0019
VAL 2590.0027
LEU 2600.0033
GLY 2610.0041
GLU 2620.0048
PHE 2630.0055
ARG 2640.0063
ASN 2650.0069
GLU 2660.0066
GLY 2670.0066
ASN 2680.0062
LEU 2690.0058
GLU 2700.0065
LYS 2710.0060
PHE 2720.0053
ASP 2730.0053
LYS 2740.0049
SER 2750.0044
ALA 2760.0042
LEU 2770.0034
GLU 2780.0032
GLY 2790.0025
LEU 2800.0022
CYS 2810.0022
ASN 2820.0015
LEU 2830.0011
THR 2840.0011
ILE 2850.0012
GLU 2860.0011
GLU 2870.0015
PHE 2880.0021
ARG 2890.0027
LEU 2900.0034
ALA 2910.0038
TYR 2920.0047
LEU 2930.0051
ASP 2940.0060
TYR 2950.0061
TYR 2960.0064
LEU 2970.0060
ASP 2980.0066
GLY 2990.0060
ILE 3000.0052
ILE 3010.0055
ASP 3020.0048
LEU 3030.0045
PHE 3040.0038
ASN 3050.0039
CYS 3060.0031
LEU 3070.0029
THR 3080.0033
ASN 3090.0028
VAL 3100.0022
SER 3110.0021
SER 3120.0020
PHE 3130.0026
SER 3140.0029
LEU 3150.0036
VAL 3160.0039
SER 3170.0047
VAL 3180.0049
THR 3190.0057
ILE 3200.0057
GLU 3210.0065
ARG 3220.0064
VAL 3230.0058
LYS 3240.0061
ASP 3250.0056
PHE 3260.0050
SER 3270.0054
TYR 3280.0051
ASN 3290.0047
PHE 3300.0040
GLY 3310.0035
TRP 3320.0031
GLN 3330.0027
HIS 3340.0025
LEU 3350.0030
GLU 3360.0030
LEU 3370.0037
VAL 3380.0037
ASN 3390.0044
CYS 3400.0048
LYS 3410.0055
PHE 3420.0057
GLY 3430.0064
GLN 3440.0062
PHE 3450.0056
PRO 3460.0053
THR 3470.0055
LEU 3480.0048
LYS 3490.0049
LEU 3500.0043
LYS 3510.0043
SER 3520.0037
LEU 3530.0034
LYS 3540.0030
ARG 3550.0027
LEU 3560.0031
THR 3570.0031
PHE 3580.0037
THR 3590.0036
SER 3600.0041
ASN 3610.0046
LYS 3620.0053
GLY 3630.0058
GLY 3640.0061
ASN 3650.0056
ALA 3660.0060
PHE 3670.0053
SER 3680.0056
GLU 3690.0055
VAL 3700.0050
ASP 3710.0049
LEU 3720.0040
PRO 3730.0041
SER 3740.0036
LEU 3750.0034
GLU 3760.0031
PHE 3770.0028
LEU 3780.0032
ASP 3790.0031
LEU 3800.0036
SER 3810.0034
ARG 3820.0038
ASN 3830.0044
GLY 3840.0047
LEU 3850.0049
SER 3860.0053
PHE 3870.0050
LYS 3880.0055
GLY 3890.0055
CYS 3900.0049
CYS 3910.0046
SER 3920.0048
GLN 3930.0048
SER 3940.0052
ASP 3950.0049
PHE 3960.0045
GLY 3970.0043
THR 3980.0040
ILE 3990.0040
SER 4000.0036
LEU 4010.0034
LYS 4020.0032
TYR 4030.0029
LEU 4040.0033
ASP 4050.0032
LEU 4060.0036
SER 4070.0034
PHE 4080.0037
ASN 4090.0042
GLY 4100.0046
VAL 4110.0048
ILE 4120.0046
THR 4130.0049
MET 4140.0048
SER 4150.0052
SER 4160.0051
ASN 4170.0047
PHE 4180.0044
LEU 4190.0048
GLY 4200.0046
LEU 4210.0042
GLU 4220.0041
GLN 4230.0037
LEU 4240.0034
GLU 4250.0030
HIS 4260.0028
LEU 4270.0032
ASP 4280.0031
PHE 4290.0034
GLN 4300.0031
HIS 4310.0034
SER 4320.0038
ASN 4330.0041
LEU 4340.0041
LYS 4350.0044
GLN 4360.0046
MET 4370.0043
SER 4380.0043
GLU 4390.0048
PHE 4400.0047
SER 4410.0044
VAL 4420.0044
PHE 4430.0040
LEU 4440.0044
SER 4450.0044
LEU 4460.0039
ARG 4470.0039
ASN 4480.0035
LEU 4490.0033
ILE 4500.0029
TYR 4510.0027
LEU 4520.0030
ASP 4530.0029
ILE 4540.0031
SER 4550.0029
HIS 4560.0031
THR 4570.0035
HIS 4580.0036
THR 4590.0036
ARG 4600.0036
VAL 4610.0035
ALA 4620.0039
PHE 4630.0040
ASN 4640.0038
GLY 4650.0041
ILE 4660.0039
PHE 4670.0037
ASN 4680.0040
GLY 4690.0040
LEU 4700.0036
SER 4710.0036
SER 4720.0033
LEU 4730.0031
GLU 4740.0027
VAL 4750.0025
LEU 4760.0027
LYS 4770.0027
MET 4780.0028
ALA 4790.0027
GLY 4800.0029
ASN 4810.0031
SER 4820.0032
PHE 4830.0032
GLN 4840.0034
GLU 4850.0032
ASN 4860.0029
PHE 4870.0029
LEU 4880.0028
PRO 4890.0031
ASP 4900.0032
ILE 4910.0033
PHE 4920.0032
THR 4930.0034
GLU 4940.0035
LEU 4950.0032
ARG 4960.0031
ASN 4970.0030
LEU 4980.0027
THR 4990.0024
PHE 5000.0023
LEU 5010.0024
ASP 5020.0024
LEU 5030.0025
SER 5040.0024
GLN 5050.0025
CYS 5060.0027
GLN 5070.0026
LEU 5080.0025
GLU 5090.0024
GLN 5100.0024
LEU 5110.0024
SER 5120.0027
PRO 5130.0025
THR 5140.0028
ALA 5150.0028
PHE 5160.0026
ASN 5170.0027
SER 5180.0030
LEU 5190.0027
SER 5200.0026
SER 5210.0026
LEU 5220.0024
GLN 5230.0021
VAL 5240.0020
LEU 5250.0021
ASN 5260.0020
MET 5270.0021
SER 5280.0021
HIS 5290.0022
ASN 5300.0023
ASN 5310.0022
PHE 5320.0020
PHE 5330.0018
SER 5340.0015
LEU 5350.0014
ASP 5360.0016
THR 5370.0016
PHE 5380.0019
PRO 5390.0022
TYR 5400.0020
LYS 5410.0021
CYS 5420.0024
LEU 5430.0022
ASN 5440.0023
SER 5450.0022
LEU 5460.0019
GLN 5470.0017
VAL 5480.0016
LEU 5490.0017
ASP 5500.0017
TYR 5510.0017
SER 5520.0017
LEU 5530.0019
ASN 5540.0019
HIS 5550.0018
ILE 5560.0015
MET 5570.0013
THR 5580.0011
SER 5590.0011
LYS 5600.0012
LYS 5610.0014
GLN 5620.0011
GLU 5630.0014
LEU 5640.0012
GLN 5650.0013
HIS 5660.0017
PHE 5670.0016
PRO 5680.0018
SER 5690.0017
SER 5700.0017
LEU 5710.0015
ALA 5720.0013
PHE 5730.0012
LEU 5740.0012
ASN 5750.0013
LEU 5760.0012
THR 5770.0014
GLN 5780.0017
ASN 5790.0016
ASP 5800.0017
PHE 5810.0013
ALA 5820.0013
CYS 5830.0012
THR 5840.0011
CYS 5850.0009
GLU 5860.0007
HIS 5870.0006
GLN 5880.0004
SER 5890.0003
PHE 5900.0005
LEU 5910.0004
GLN 5920.0003
TRP 5930.0004
ILE 5940.0004
LYS 5950.0003
ASP 5960.0005
GLN 5970.0006
ARG 5980.0003
GLN 5990.0006
LEU 6000.0009
LEU 6010.0007
VAL 6020.0010
GLU 6030.0009
VAL 6040.0007
GLU 6050.0011
ARG 6060.0013
MET 6070.0011
GLU 6080.0014
CYS 6090.0014
ALA 6100.0018
THR 6110.0018
PRO 6120.0019
SER 6130.0023
ASP 6140.0023
LYS 6150.0019
GLN 6160.0020
GLY 6170.0019
MET 6180.0016
PRO 6190.0012
VAL 6200.0009
LEU 6210.0007
SER 6220.0011
LEU 6230.0011
ASN 6240.0013
ILE 6250.0010
THR 6260.0013
CYS 6270.0013
GLU 10.0614
ALA 20.0574
ALA 30.0527
ALA 40.0481
LYS 50.0438
MET 60.0404
GLN 70.0350
ARG 80.0314
LEU 90.0276
VAL 100.0238
LEU 110.0194
LEU 120.0159
LEU 130.0142
ALA 140.0103
ILE 150.0077
SER 160.0042
LEU 170.0041
LEU 180.0019
LEU 190.0013
TYR 200.0030
GLN 210.0031
ASP 220.0028
LEU 230.0032
PRO 240.0041
VAL 250.0044
ARG 260.0030
SER 270.0026
GLU 280.0023
PHE 290.0021
GLU 300.0020
LEU 310.0017
ASP 320.0013
ARG 330.0008
ILE 340.0008
CYS 350.0007
GLY 360.0012
TYR 370.0018
GLY 380.0017
THR 390.0021
ALA 400.0016
ARG 410.0015
CYS 420.0017
ARG 430.0027
LYS 440.0036
LYS 450.0041
CYS 460.0040
ARG 470.0044
SER 480.0052
GLN 490.0048
GLU 500.0041
TYR 510.0041
ARG 520.0034
ILE 530.0028
GLY 540.0021
ARG 550.0019
CYS 560.0015
PRO 570.0019
ASN 580.0026
THR 590.0028
TYR 600.0027
ALA 610.0028
CYS 620.0021
CYS 630.0028
LEU 640.0030
ARG 650.0038
LYS 660.0049
TRP 670.0050
ASP 680.0054
GLU 690.0059
SER 700.0060
LEU 710.0062
LEU 720.0062
ASN 730.0062
ARG 740.0062
THR 750.0062
LYS 760.0069
PRO 770.0068
GLU 780.0040
ALA 790.0045
ALA 800.0088
ALA 810.0394
LYS 820.0344
LYS 830.0336
GLU 840.0315
MET 850.0288
ASN 860.0288
LEU 870.0235
SER 880.0238
VAL 890.0186
GLY 900.0193
LEU 910.0164
GLY 920.0161
GLY 930.0209
GLY 940.0255
SER 950.0248
ASN 960.0255
LEU 970.0231
SER 980.0261
VAL 990.0236
GLY 1000.0275
LEU 1010.0246
GLY 1020.0256
GLU 1030.0240
ILE 1040.0201
GLY 1050.0185
GLY 1060.0160
GLY 1070.0135
SER 1080.0118
LYS 1090.0132
LEU 1100.0102
LEU 1110.0118
ASP 1120.0106
ILE 1130.0112
ASN 1140.0130
LEU 1150.0116
GLY 1160.0157
ARG 1170.0168
GLY 1180.0150
GLY 1190.0110
GLY 1200.0074
SER 1210.0082
MET 1220.0098
VAL 1230.0116
ASP 1240.0169
LEU 1250.0184
THR 1260.0239
PHE 1270.0261
GLY 1280.0312
GLY 1290.0349
VAL 1300.0361
GLY 1310.0435
GLY 1320.0409
GLY 1330.0403
SER 1340.0343
THR 1350.0334
PHE 1360.0274
THR 1370.0269
PHE 1380.0231
PHE 1390.0236
PRO 1400.0217
LEU 1410.0203
VAL 1420.0234
ILE 1430.0201
GLY 1440.0245
GLY 1450.0243
GLY 1460.0219
SER 1470.0173
ASP 1480.0121
ALA 1490.0096
MET 1500.0083
TYR 1510.0090
LEU 1520.0114
GLY 1530.0142
PHE 1540.0184
ALA 1550.0219
ALA 1560.0271
GLY 1570.0328
GLY 1580.0385
GLY 1590.0425
SER 1600.0458
ALA 1610.0444
GLY 1620.0440
GLY 1630.0401
GLU 1640.0344
ASN 1650.0298
HIS 1660.0251
VAL 1670.0205
ALA 1680.0176
PHE 1690.0130
GLY 1700.0129
PRO 1710.0121
GLY 1720.0183
PRO 1730.0227
GLY 1740.0238
VAL 1750.0211
ASP 1760.0239
LEU 1770.0268
THR 1780.0306
PHE 1790.0346
GLY 1800.0397
GLY 1810.0397
VAL 1820.0396
GLN 1830.0348
PHE 1840.0339
ALA 1850.0323
MET 1860.0311
VAL 1870.0349
ASN 1880.0341
ASN 1890.0390
GLY 1900.0387
PRO 1910.0366
GLY 1920.0358
PRO 1930.0399
GLY 1940.0363
GLU 1950.0260
SER 1960.0324
PHE 1970.0250
THR 1980.0344
ALA 1990.0295
GLN 2000.0328
PRO 2010.0297
ALA 2020.0299
ASP 2030.0205
MET 2040.0080
GLN 2050.0109
ALA 2060.0172
GLY 2070.0326
ILE 2080.0253
LYS 2090.0402
GLY 2100.0438
PRO 2110.0338
GLY 2120.0446
PRO 2130.0465
GLY 2140.0320
GLY 2150.0192
SER 2160.0255
ILE 2170.0257
GLN 2180.0240
VAL 2190.0259
ILE 2200.0236
ASN 2210.0238
GLY 2220.0197
SER 2230.0195
THR 2240.0184
ILE 2250.0151
GLY 2260.0172
THR 2270.0159
GLY 2280.0141
SER 2290.0112
LYS 2300.0092
LYS 2310.0085
THR 2320.0070
ILE 2330.0076
LEU 2340.0072
ILE 2350.0075
TYR 2360.0064
SER 2370.0066
ILE 2380.0065
ILE 2390.0059
GLY 2400.0064
VAL 2410.0054
LYS 2420.0051
LYS 2430.0056
GLY 2440.0049
THR 2450.0040
LEU 2460.0038
ALA 2470.0037
TRP 2480.0036
ALA 2490.0040
ARG 2500.0041
THR 2510.0051
GLY 2520.0045
PHE 2530.0039
SER 2540.0039
PRO 2550.0045
ALA 2560.0041
LYS 2570.0050
LYS 2580.0063
LEU 2590.0066
ASN 2600.0080
ALA 2610.0093
GLY 2620.0069
VAL 2630.0045
VAL 2640.0043
ARG 2650.0029
VAL 2660.0044
PHE 2670.0038
PHE 2680.0043
LEU 2690.0038
ASN 2700.0036
GLN 2710.0034
LYS 2720.0036
LYS 2730.0038
ALA 2740.0033
LYS 2750.0031
ASP 2760.0030
VAL 2770.0029
LEU 2780.0026
ARG 2790.0022
LYS 2800.0023
THR 2810.0022
SER 2820.0023
ARG 2830.0023
PRO 2840.0027
MET 2850.0038
VAL 2860.0034
ASP 2870.0062
LEU 2880.0085
THR 2890.0109
PHE 2900.0130
GLY 2910.0168
GLY 2920.0203

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.