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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 18  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.1985
GLU 270.0129
PRO 280.0131
CYS 290.0120
VAL 300.0127
GLU 310.0130
VAL 320.0126
VAL 330.0129
PRO 340.0136
ASN 350.0124
ILE 360.0113
THR 370.0106
TYR 380.0105
GLN 390.0104
CYS 400.0101
MET 410.0099
GLU 420.0107
LEU 430.0113
ASN 440.0107
PHE 450.0095
TYR 460.0088
LYS 470.0077
ILE 480.0073
PRO 490.0088
ASP 500.0090
ASN 510.0107
LEU 520.0106
PRO 530.0110
PHE 540.0099
SER 550.0106
THR 560.0097
LYS 570.0090
ASN 580.0085
LEU 590.0080
ASP 600.0079
LEU 610.0076
SER 620.0076
PHE 630.0085
ASN 640.0087
PRO 650.0085
LEU 660.0070
ARG 670.0065
HIS 680.0052
LEU 690.0039
GLY 700.0031
SER 710.0020
TYR 720.0033
SER 730.0043
PHE 740.0052
PHE 750.0056
SER 760.0073
PHE 770.0075
PRO 780.0075
GLU 790.0084
LEU 800.0073
GLN 810.0069
VAL 820.0063
LEU 830.0055
ASP 840.0057
LEU 850.0053
SER 860.0057
ARG 870.0065
CYS 880.0066
GLU 890.0068
ILE 900.0053
GLN 910.0055
THR 920.0042
ILE 930.0026
GLU 940.0018
ASP 950.0005
GLY 960.0012
ALA 970.0020
TYR 980.0029
GLN 990.0032
SER 1000.0048
LEU 1010.0051
SER 1020.0058
HIS 1030.0067
LEU 1040.0054
SER 1050.0053
THR 1060.0044
LEU 1070.0034
ILE 1080.0036
LEU 1090.0033
THR 1100.0040
GLY 1110.0052
ASN 1120.0050
PRO 1130.0057
ILE 1140.0045
GLN 1150.0054
SER 1160.0044
LEU 1170.0029
ALA 1180.0025
LEU 1190.0027
GLY 1200.0017
ALA 1210.0003
PHE 1220.0012
SER 1230.0024
GLY 1240.0037
LEU 1250.0038
SER 1260.0053
SER 1270.0056
LEU 1280.0042
GLN 1290.0043
LYS 1300.0031
LEU 1310.0018
VAL 1320.0019
ALA 1330.0017
VAL 1340.0027
GLU 1350.0041
THR 1360.0037
ASN 1370.0047
LEU 1380.0038
ALA 1390.0050
SER 1400.0045
LEU 1410.0036
GLU 1420.0047
ASN 1430.0042
PHE 1440.0027
PRO 1450.0025
ILE 1460.0023
GLY 1470.0039
HIS 1480.0041
LEU 1490.0037
LYS 1500.0050
THR 1510.0051
LEU 1520.0036
LYS 1530.0037
GLU 1540.0024
LEU 1550.0011
ASN 1560.0006
VAL 1570.0014
ALA 1580.0023
HIS 1590.0037
ASN 1600.0039
LEU 1610.0050
ILE 1620.0043
GLN 1630.0054
SER 1640.0053
PHE 1650.0045
LYS 1660.0053
LEU 1670.0047
PRO 1680.0052
GLU 1690.0060
TYR 1700.0050
PHE 1710.0045
SER 1720.0060
ASN 1730.0056
LEU 1740.0046
THR 1750.0057
ASN 1760.0052
LEU 1770.0038
GLU 1780.0036
HIS 1790.0022
LEU 1800.0014
ASP 1810.0004
LEU 1820.0018
SER 1830.0021
SER 1840.0034
ASN 1850.0039
LYS 1860.0050
ILE 1870.0045
GLN 1880.0055
SER 1890.0056
ILE 1900.0052
TYR 1910.0063
CYS 1920.0068
THR 1930.0072
ASP 1940.0059
LEU 1950.0056
ARG 1960.0067
VAL 1970.0060
LEU 1980.0055
HIS 1990.0068
GLN 2000.0073
MET 2010.0067
PRO 2020.0069
LEU 2030.0068
LEU 2040.0054
ASN 2050.0047
LEU 2060.0035
SER 2070.0023
LEU 2080.0017
ASP 2090.0008
LEU 2100.0019
SER 2110.0020
LEU 2120.0031
ASN 2130.0036
PRO 2140.0046
MET 2150.0043
ASN 2160.0053
PHE 2170.0055
ILE 2180.0050
GLN 2190.0061
PRO 2200.0062
GLY 2210.0065
ALA 2220.0058
PHE 2230.0051
LYS 2240.0060
GLU 2250.0063
ILE 2260.0053
ARG 2270.0048
LEU 2280.0036
HIS 2290.0034
LYS 2300.0023
LEU 2310.0017
THR 2320.0008
LEU 2330.0014
ARG 2340.0016
ASN 2350.0025
ASN 2360.0029
PHE 2370.0034
ASP 2380.0042
SER 2390.0039
LEU 2400.0032
ASN 2410.0039
VAL 2420.0042
MET 2430.0031
LYS 2440.0033
THR 2450.0043
CYS 2460.0038
ILE 2470.0032
GLN 2480.0042
GLY 2490.0046
LEU 2500.0039
ALA 2510.0046
GLY 2520.0051
LEU 2530.0043
GLU 2540.0043
VAL 2550.0033
HIS 2560.0034
ARG 2570.0024
LEU 2580.0016
VAL 2590.0008
LEU 2600.0007
GLY 2610.0012
GLU 2620.0022
PHE 2630.0029
ARG 2640.0036
ASN 2650.0042
GLU 2660.0039
GLY 2670.0042
ASN 2680.0035
LEU 2690.0031
GLU 2700.0036
LYS 2710.0028
PHE 2720.0019
ASP 2730.0015
LYS 2740.0009
SER 2750.0017
ALA 2760.0016
LEU 2770.0015
GLU 2780.0022
GLY 2790.0029
LEU 2800.0024
CYS 2810.0031
ASN 2820.0040
LEU 2830.0037
THR 2840.0038
ILE 2850.0030
GLU 2860.0035
GLU 2870.0026
PHE 2880.0018
ARG 2890.0014
LEU 2900.0010
ALA 2910.0014
TYR 2920.0021
LEU 2930.0020
ASP 2940.0029
TYR 2950.0025
TYR 2960.0027
LEU 2970.0022
ASP 2980.0024
GLY 2990.0021
ILE 3000.0017
ILE 3010.0016
ASP 3020.0011
LEU 3030.0008
PHE 3040.0013
ASN 3050.0017
CYS 3060.0020
LEU 3070.0020
THR 3080.0024
ASN 3090.0030
VAL 3100.0028
SER 3110.0033
SER 3120.0028
PHE 3130.0023
SER 3140.0021
LEU 3150.0019
VAL 3160.0021
SER 3170.0026
VAL 3180.0024
THR 3190.0029
ILE 3200.0028
GLU 3210.0033
ARG 3220.0033
VAL 3230.0034
LYS 3240.0036
ASP 3250.0030
PHE 3260.0032
SER 3270.0036
TYR 3280.0031
ASN 3290.0034
PHE 3300.0030
GLY 3310.0033
TRP 3320.0031
GLN 3330.0036
HIS 3340.0033
LEU 3350.0029
GLU 3360.0028
LEU 3370.0027
VAL 3380.0026
ASN 3390.0029
CYS 3400.0029
LYS 3410.0035
PHE 3420.0038
GLY 3430.0043
GLN 3440.0046
PHE 3450.0044
PRO 3460.0040
THR 3470.0043
LEU 3480.0040
LYS 3490.0042
LEU 3500.0039
LYS 3510.0043
SER 3520.0038
LEU 3530.0037
LYS 3540.0040
ARG 3550.0038
LEU 3560.0036
THR 3570.0031
PHE 3580.0033
THR 3590.0030
SER 3600.0032
ASN 3610.0035
LYS 3620.0039
GLY 3630.0042
GLY 3640.0047
ASN 3650.0048
ALA 3660.0055
PHE 3670.0052
SER 3680.0055
GLU 3690.0057
VAL 3700.0051
ASP 3710.0052
LEU 3720.0044
PRO 3730.0048
SER 3740.0046
LEU 3750.0044
GLU 3760.0045
PHE 3770.0038
LEU 3780.0038
ASP 3790.0033
LEU 3800.0036
SER 3810.0033
ARG 3820.0033
ASN 3830.0040
GLY 3840.0045
LEU 3850.0048
SER 3860.0055
PHE 3870.0058
LYS 3880.0068
GLY 3890.0071
CYS 3900.0061
CYS 3910.0059
SER 3920.0064
GLN 3930.0064
SER 3940.0067
ASP 3950.0060
PHE 3960.0053
GLY 3970.0056
THR 3980.0054
ILE 3990.0058
SER 4000.0054
LEU 4010.0049
LYS 4020.0046
TYR 4030.0038
LEU 4040.0038
ASP 4050.0032
LEU 4060.0036
SER 4070.0029
PHE 4080.0034
ASN 4090.0042
GLY 4100.0051
VAL 4110.0056
ILE 4120.0055
THR 4130.0064
MET 4140.0063
SER 4150.0074
SER 4160.0072
ASN 4170.0070
PHE 4180.0064
LEU 4190.0074
GLY 4200.0073
LEU 4210.0062
GLU 4220.0066
GLN 4230.0061
LEU 4240.0050
GLU 4250.0047
HIS 4260.0036
LEU 4270.0033
ASP 4280.0025
PHE 4290.0030
GLN 4300.0024
HIS 4310.0034
SER 4320.0040
ASN 4330.0049
LEU 4340.0049
LYS 4350.0059
GLN 4360.0065
MET 4370.0056
SER 4380.0060
GLU 4390.0073
PHE 4400.0072
SER 4410.0065
VAL 4420.0060
PHE 4430.0056
LEU 4440.0068
SER 4450.0072
LEU 4460.0061
ARG 4470.0068
ASN 4480.0063
LEU 4490.0050
ILE 4500.0046
TYR 4510.0034
LEU 4520.0027
ASP 4530.0018
ILE 4540.0023
SER 4550.0021
HIS 4560.0033
THR 4570.0035
HIS 4580.0044
THR 4590.0042
ARG 4600.0046
VAL 4610.0042
ALA 4620.0053
PHE 4630.0056
ASN 4640.0051
GLY 4650.0059
ILE 4660.0051
PHE 4670.0047
ASN 4680.0062
GLY 4690.0070
LEU 4700.0058
SER 4710.0069
SER 4720.0066
LEU 4730.0051
GLU 4740.0049
VAL 4750.0036
LEU 4760.0025
LYS 4770.0014
MET 4780.0015
ALA 4790.0022
GLY 4800.0034
ASN 4810.0033
SER 4820.0040
PHE 4830.0037
GLN 4840.0048
GLU 4850.0050
ASN 4860.0040
PHE 4870.0028
LEU 4880.0017
PRO 4890.0026
ASP 4900.0035
ILE 4910.0038
PHE 4920.0041
THR 4930.0056
GLU 4940.0065
LEU 4950.0056
ARG 4960.0069
ASN 4970.0069
LEU 4980.0053
THR 4990.0057
PHE 5000.0045
LEU 5010.0032
ASP 5020.0024
LEU 5030.0021
SER 5040.0034
GLN 5050.0043
CYS 5060.0034
GLN 5070.0048
LEU 5080.0036
GLU 5090.0042
GLN 5100.0028
LEU 5110.0017
SER 5120.0017
PRO 5130.0027
THR 5140.0038
ALA 5150.0030
PHE 5160.0041
ASN 5170.0056
SER 5180.0065
LEU 5190.0061
SER 5200.0078
SER 5210.0078
LEU 5220.0064
GLN 5230.0072
VAL 5240.0061
LEU 5250.0047
ASN 5260.0045
MET 5270.0042
SER 5280.0055
HIS 5290.0061
ASN 5300.0053
ASN 5310.0061
PHE 5320.0058
PHE 5330.0071
SER 5340.0066
LEU 5350.0066
ASP 5360.0054
THR 5370.0062
PHE 5380.0054
PRO 5390.0044
TYR 5400.0060
LYS 5410.0073
CYS 5420.0074
LEU 5430.0074
ASN 5440.0093
SER 5450.0091
LEU 5460.0080
GLN 5470.0090
VAL 5480.0080
LEU 5490.0069
ASP 5500.0067
TYR 5510.0067
SER 5520.0079
LEU 5530.0084
ASN 5540.0076
HIS 5550.0085
ILE 5560.0084
MET 5570.0098
THR 5580.0091
SER 5590.0079
LYS 5600.0068
LYS 5610.0060
GLN 5620.0077
GLU 5630.0073
LEU 5640.0086
GLN 5650.0097
HIS 5660.0085
PHE 5670.0088
PRO 5680.0095
SER 5690.0114
SER 5700.0109
LEU 5710.0101
ALA 5720.0111
PHE 5730.0102
LEU 5740.0094
ASN 5750.0092
LEU 5760.0095
THR 5770.0105
GLN 5780.0108
ASN 5790.0101
ASP 5800.0111
PHE 5810.0117
ALA 5820.0124
CYS 5830.0141
THR 5840.0142
CYS 5850.0145
GLU 5860.0126
HIS 5870.0118
GLN 5880.0132
SER 5890.0119
PHE 5900.0110
LEU 5910.0129
GLN 5920.0138
TRP 5930.0124
ILE 5940.0126
LYS 5950.0146
ASP 5960.0144
GLN 5970.0132
ARG 5980.0142
GLN 5990.0142
LEU 6000.0121
LEU 6010.0120
VAL 6020.0119
GLU 6030.0130
VAL 6040.0143
GLU 6050.0150
ARG 6060.0134
MET 6070.0129
GLU 6080.0140
CYS 6090.0143
ALA 6100.0138
THR 6110.0139
PRO 6120.0155
SER 6130.0170
ASP 6140.0183
LYS 6150.0170
GLN 6160.0160
GLY 6170.0162
MET 6180.0168
PRO 6190.0158
VAL 6200.0147
LEU 6210.0157
SER 6220.0175
LEU 6230.0170
ASN 6240.0181
ILE 6250.0168
THR 6260.0182
CYS 6270.0179
GLU 10.0263
ALA 20.0242
ALA 30.0227
ALA 40.0204
LYS 50.0175
MET 60.0162
GLN 70.0142
ARG 80.0120
LEU 90.0096
VAL 100.0083
LEU 110.0067
LEU 120.0041
LEU 130.0035
ALA 140.0020
ILE 150.0027
SER 160.0020
LEU 170.0021
LEU 180.0023
LEU 190.0035
TYR 200.0040
GLN 210.0038
ASP 220.0040
LEU 230.0047
PRO 240.0049
VAL 250.0050
ARG 260.0059
SER 270.0052
GLU 280.0061
PHE 290.0056
GLU 300.0047
LEU 310.0048
ASP 320.0055
ARG 330.0048
ILE 340.0045
CYS 350.0052
GLY 360.0046
TYR 370.0041
GLY 380.0042
THR 390.0048
ALA 400.0050
ARG 410.0051
CYS 420.0061
ARG 430.0065
LYS 440.0075
LYS 450.0074
CYS 460.0068
ARG 470.0058
SER 480.0056
GLN 490.0048
GLU 500.0056
TYR 510.0067
ARG 520.0074
ILE 530.0075
GLY 540.0080
ARG 550.0082
CYS 560.0074
PRO 570.0079
ASN 580.0081
THR 590.0087
TYR 600.0079
ALA 610.0076
CYS 620.0068
CYS 630.0061
LEU 640.0055
ARG 650.0047
LYS 660.0054
TRP 670.0051
ASP 680.0040
GLU 690.0045
SER 700.0035
LEU 710.0042
LEU 720.0055
ASN 730.0052
ARG 740.0049
THR 750.0062
LYS 760.0070
PRO 770.0078
GLU 780.0078
ALA 790.0092
ALA 800.0096
ALA 810.0071
LYS 820.0073
LYS 830.0068
GLU 840.0064
MET 850.0062
ASN 860.0067
LEU 870.0067
SER 880.0073
VAL 890.0075
GLY 900.0081
LEU 910.0087
GLY 920.0094
GLY 930.0100
GLY 940.0097
SER 950.0091
ASN 960.0084
LEU 970.0078
SER 980.0073
VAL 990.0067
GLY 1000.0065
LEU 1010.0062
GLY 1020.0068
GLU 1030.0070
ILE 1040.0072
GLY 1050.0075
GLY 1060.0046
GLY 1070.0042
SER 1080.0035
LYS 1090.0039
LEU 1100.0036
LEU 1110.0053
ASP 1120.0059
ILE 1130.0067
ASN 1140.0073
LEU 1150.0080
GLY 1160.0085
ARG 1170.0090
GLY 1180.0094
GLY 1190.0095
GLY 1200.0095
SER 1210.0089
MET 1220.0086
VAL 1230.0081
ASP 1240.0078
LEU 1250.0072
THR 1260.0071
PHE 1270.0069
GLY 1280.0070
GLY 1290.0067
VAL 1300.0066
GLY 1310.0064
GLY 1320.0061
GLY 1330.0058
SER 1340.0059
THR 1350.0057
PHE 1360.0058
THR 1370.0056
PHE 1380.0061
PHE 1390.0060
PRO 1400.0065
LEU 1410.0061
VAL 1420.0060
ILE 1430.0060
GLY 1440.0059
GLY 1450.0059
GLY 1460.0078
SER 1470.0078
ASP 1480.0079
ALA 1490.0074
MET 1500.0070
TYR 1510.0067
LEU 1520.0065
GLY 1530.0061
PHE 1540.0059
ALA 1550.0056
ALA 1560.0057
GLY 1570.0054
GLY 1580.0052
GLY 1590.0053
SER 1600.0055
ALA 1610.0057
GLY 1620.0061
GLY 1630.0064
GLU 1640.0067
ASN 1650.0067
HIS 1660.0071
VAL 1670.0072
ALA 1680.0077
PHE 1690.0080
GLY 1700.0084
PRO 1710.0097
GLY 1720.0093
PRO 1730.0089
GLY 1740.0081
VAL 1750.0076
ASP 1760.0073
LEU 1770.0068
THR 1780.0067
PHE 1790.0063
GLY 1800.0062
GLY 1810.0065
VAL 1820.0062
GLN 1830.0065
PHE 1840.0064
ALA 1850.0068
MET 1860.0067
VAL 1870.0067
ASN 1880.0078
ASN 1890.0074
GLY 1900.0088
PRO 1910.0113
GLY 1920.0154
PRO 1930.0195
GLY 1940.0213
GLU 1950.0171
SER 1960.0155
PHE 1970.0152
THR 1980.0127
ALA 1990.0119
GLN 2000.0125
PRO 2010.0104
ALA 2020.0124
ASP 2030.0139
MET 2040.0110
GLN 2050.0108
ALA 2060.0115
GLY 2070.0146
ILE 2080.0138
LYS 2090.0183
GLY 2100.0195
PRO 2110.0179
GLY 2120.0212
PRO 2130.0182
GLY 2140.0089
GLY 2150.0056
SER 2160.0032
ILE 2170.0043
GLN 2180.0031
VAL 2190.0043
ILE 2200.0048
ASN 2210.0068
GLY 2220.0059
SER 2230.0053
THR 2240.0051
ILE 2250.0059
GLY 2260.0100
THR 2270.0132
GLY 2280.0148
SER 2290.0160
LYS 2300.0120
LYS 2310.0077
THR 2320.0064
ILE 2330.0058
LEU 2340.0055
ILE 2350.0055
TYR 2360.0061
SER 2370.0061
ILE 2380.0062
ILE 2390.0056
GLY 2400.0058
VAL 2410.0060
LYS 2420.0055
LYS 2430.0061
GLY 2440.0068
THR 2450.0064
LEU 2460.0063
ALA 2470.0052
TRP 2480.0052
ALA 2490.0045
ARG 2500.0050
THR 2510.0053
GLY 2520.0063
PHE 2530.0062
SER 2540.0073
PRO 2550.0079
ALA 2560.0085
LYS 2570.0095
LYS 2580.0102
LEU 2590.0093
ASN 2600.0170
ALA 2610.0309
GLY 2620.0216
VAL 2630.0175
VAL 2640.0118
ARG 2650.0042
VAL 2660.0039
PHE 2670.0046
PHE 2680.0048
LEU 2690.0055
ASN 2700.0060
GLN 2710.0052
LYS 2720.0043
LYS 2730.0050
ALA 2740.0055
LYS 2750.0045
ASP 2760.0049
VAL 2770.0066
LEU 2780.0079
ARG 2790.0079
LYS 2800.0077
THR 2810.0108
SER 2820.0159
ARG 2830.0148
PRO 2840.0200
MET 2850.0279
VAL 2860.0242
ASP 2870.0421
LEU 2880.0663
THR 2890.0914
PHE 2900.1217
GLY 2910.1618
GLY 2920.1985

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.