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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 19  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0747
GLU 270.0075
PRO 280.0079
CYS 290.0069
VAL 300.0068
GLU 310.0063
VAL 320.0058
VAL 330.0054
PRO 340.0057
ASN 350.0049
ILE 360.0042
THR 370.0045
TYR 380.0052
GLN 390.0057
CYS 400.0062
MET 410.0063
GLU 420.0072
LEU 430.0077
ASN 440.0081
PHE 450.0076
TYR 460.0079
LYS 470.0072
ILE 480.0063
PRO 490.0064
ASP 500.0063
ASN 510.0066
LEU 520.0057
PRO 530.0050
PHE 540.0041
SER 550.0036
THR 560.0039
LYS 570.0031
ASN 580.0035
LEU 590.0043
ASP 600.0047
LEU 610.0055
SER 620.0056
PHE 630.0064
ASN 640.0069
PRO 650.0075
LEU 660.0070
ARG 670.0073
HIS 680.0071
LEU 690.0063
GLY 700.0065
SER 710.0059
TYR 720.0052
SER 730.0055
PHE 740.0046
PHE 750.0045
SER 760.0045
PHE 770.0038
PRO 780.0030
GLU 790.0025
LEU 800.0029
GLN 810.0023
VAL 820.0028
LEU 830.0036
ASP 840.0041
LEU 850.0048
SER 860.0050
ARG 870.0057
CYS 880.0062
GLU 890.0068
ILE 900.0065
GLN 910.0071
THR 920.0070
ILE 930.0062
GLU 940.0064
ASP 950.0060
GLY 960.0052
ALA 970.0053
TYR 980.0043
GLN 990.0042
SER 1000.0036
LEU 1010.0031
SER 1020.0024
HIS 1030.0018
LEU 1040.0023
SER 1050.0018
THR 1060.0023
LEU 1070.0032
ILE 1080.0036
LEU 1090.0044
THR 1100.0046
GLY 1110.0054
ASN 1120.0059
PRO 1130.0067
ILE 1140.0065
GLN 1150.0074
SER 1160.0073
LEU 1170.0066
ALA 1180.0066
LEU 1190.0063
GLY 1200.0057
ALA 1210.0054
PHE 1220.0045
SER 1230.0045
GLY 1240.0037
LEU 1250.0032
SER 1260.0028
SER 1270.0020
LEU 1280.0023
GLN 1290.0019
LYS 1300.0022
LEU 1310.0031
VAL 1320.0033
ALA 1330.0041
VAL 1340.0041
GLU 1350.0049
THR 1360.0053
ASN 1370.0066
LEU 1380.0063
ALA 1390.0070
SER 1400.0067
LEU 1410.0060
GLU 1420.0068
ASN 1430.0069
PHE 1440.0059
PRO 1450.0056
ILE 1460.0048
GLY 1470.0053
HIS 1480.0048
LEU 1490.0039
LYS 1500.0039
THR 1510.0029
LEU 1520.0029
LYS 1530.0023
GLU 1540.0024
LEU 1550.0032
ASN 1560.0035
VAL 1570.0042
ALA 1580.0043
HIS 1590.0052
ASN 1600.0058
LEU 1610.0067
ILE 1620.0067
GLN 1630.0074
SER 1640.0072
PHE 1650.0064
LYS 1660.0068
LEU 1670.0062
PRO 1680.0067
GLU 1690.0068
TYR 1700.0060
PHE 1710.0054
SER 1720.0058
ASN 1730.0053
LEU 1740.0044
THR 1750.0044
ASN 1760.0033
LEU 1770.0032
GLU 1780.0026
HIS 1790.0026
LEU 1800.0034
ASP 1810.0036
LEU 1820.0046
SER 1830.0046
SER 1840.0055
ASN 1850.0061
LYS 1860.0069
ILE 1870.0069
GLN 1880.0075
SER 1890.0074
ILE 1900.0069
TYR 1910.0076
CYS 1920.0075
THR 1930.0080
ASP 1940.0072
LEU 1950.0066
ARG 1960.0072
VAL 1970.0065
LEU 1980.0058
HIS 1990.0066
GLN 2000.0068
MET 2010.0059
PRO 2020.0056
LEU 2030.0050
LEU 2040.0043
ASN 2050.0034
LEU 2060.0033
SER 2070.0027
LEU 2080.0035
ASP 2090.0036
LEU 2100.0045
SER 2110.0046
LEU 2120.0056
ASN 2130.0061
PRO 2140.0069
MET 2150.0067
ASN 2160.0074
PHE 2170.0073
ILE 2180.0068
GLN 2190.0074
PRO 2200.0071
GLY 2210.0070
ALA 2220.0068
PHE 2230.0058
LYS 2240.0062
GLU 2250.0060
ILE 2260.0054
ARG 2270.0044
LEU 2280.0037
HIS 2290.0027
LYS 2300.0025
LEU 2310.0032
THR 2320.0034
LEU 2330.0042
ARG 2340.0044
ASN 2350.0053
ASN 2360.0058
PHE 2370.0062
ASP 2380.0071
SER 2390.0069
LEU 2400.0062
ASN 2410.0068
VAL 2420.0068
MET 2430.0057
LYS 2440.0057
THR 2450.0065
CYS 2460.0061
ILE 2470.0052
GLN 2480.0058
GLY 2490.0062
LEU 2500.0053
ALA 2510.0055
GLY 2520.0054
LEU 2530.0048
GLU 2540.0041
VAL 2550.0032
HIS 2560.0024
ARG 2570.0019
LEU 2580.0025
VAL 2590.0027
LEU 2600.0035
GLY 2610.0040
GLU 2620.0049
PHE 2630.0054
ARG 2640.0060
ASN 2650.0067
GLU 2660.0067
GLY 2670.0072
ASN 2680.0065
LEU 2690.0063
GLU 2700.0068
LYS 2710.0061
PHE 2720.0051
ASP 2730.0048
LYS 2740.0039
SER 2750.0044
ALA 2760.0045
LEU 2770.0038
GLU 2780.0041
GLY 2790.0046
LEU 2800.0037
CYS 2810.0037
ASN 2820.0047
LEU 2830.0042
THR 2840.0036
ILE 2850.0027
GLU 2860.0021
GLU 2870.0012
PHE 2880.0016
ARG 2890.0019
LEU 2900.0028
ALA 2910.0033
TYR 2920.0042
LEU 2930.0046
ASP 2940.0056
TYR 2950.0055
TYR 2960.0054
LEU 2970.0045
ASP 2980.0045
GLY 2990.0035
ILE 3000.0027
ILE 3010.0024
ASP 3020.0024
LEU 3030.0028
PHE 3040.0020
ASN 3050.0019
CYS 3060.0025
LEU 3070.0018
THR 3080.0011
ASN 3090.0017
VAL 3100.0014
SER 3110.0012
SER 3120.0004
PHE 3130.0006
SER 3140.0014
LEU 3150.0024
VAL 3160.0031
SER 3170.0041
VAL 3180.0040
THR 3190.0046
ILE 3200.0041
GLU 3210.0046
ARG 3220.0040
VAL 3230.0034
LYS 3240.0031
ASP 3250.0022
PHE 3260.0020
SER 3270.0020
TYR 3280.0010
ASN 3290.0009
PHE 3300.0004
GLY 3310.0012
TRP 3320.0007
GLN 3330.0014
HIS 3340.0011
LEU 3350.0012
GLU 3360.0017
LEU 3370.0025
VAL 3380.0031
ASN 3390.0041
CYS 3400.0041
LYS 3410.0048
PHE 3420.0046
GLY 3430.0052
GLN 3440.0050
PHE 3450.0044
PRO 3460.0035
THR 3470.0034
LEU 3480.0027
LYS 3490.0025
LEU 3500.0019
LYS 3510.0025
SER 3520.0022
LEU 3530.0019
LYS 3540.0025
ARG 3550.0021
LEU 3560.0023
THR 3570.0023
PHE 3580.0030
THR 3590.0034
SER 3600.0042
ASN 3610.0044
LYS 3620.0054
GLY 3630.0055
GLY 3640.0057
ASN 3650.0055
ALA 3660.0059
PHE 3670.0054
SER 3680.0052
GLU 3690.0050
VAL 3700.0040
ASP 3710.0038
LEU 3720.0031
PRO 3730.0036
SER 3740.0034
LEU 3750.0033
GLU 3760.0036
PHE 3770.0030
LEU 3780.0032
ASP 3790.0031
LEU 3800.0038
SER 3810.0040
ARG 3820.0045
ASN 3830.0048
GLY 3840.0058
LEU 3850.0057
SER 3860.0066
PHE 3870.0065
LYS 3880.0075
GLY 3890.0077
CYS 3900.0069
CYS 3910.0066
SER 3920.0066
GLN 3930.0060
SER 3940.0061
ASP 3950.0056
PHE 3960.0047
GLY 3970.0046
THR 3980.0046
ILE 3990.0052
SER 4000.0048
LEU 4010.0045
LYS 4020.0044
TYR 4030.0038
LEU 4040.0041
ASP 4050.0038
LEU 4060.0046
SER 4070.0045
PHE 4080.0049
ASN 4090.0055
GLY 4100.0066
VAL 4110.0073
ILE 4120.0070
THR 4130.0079
MET 4140.0079
SER 4150.0085
SER 4160.0081
ASN 4170.0081
PHE 4180.0071
LEU 4190.0076
GLY 4200.0070
LEU 4210.0062
GLU 4220.0069
GLN 4230.0060
LEU 4240.0053
GLU 4250.0050
HIS 4260.0042
LEU 4270.0045
ASP 4280.0042
PHE 4290.0050
GLN 4300.0047
HIS 4310.0054
SER 4320.0059
ASN 4330.0070
LEU 4340.0073
LYS 4350.0083
GLN 4360.0090
MET 4370.0086
SER 4380.0096
GLU 4390.0102
PHE 4400.0099
SER 4410.0092
VAL 4420.0082
PHE 4430.0076
LEU 4440.0085
SER 4450.0081
LEU 4460.0071
ARG 4470.0076
ASN 4480.0066
LEU 4490.0059
ILE 4500.0052
TYR 4510.0044
LEU 4520.0048
ASP 4530.0044
ILE 4540.0054
SER 4550.0051
HIS 4560.0059
THR 4570.0063
HIS 4580.0074
THR 4590.0077
ARG 4600.0087
VAL 4610.0087
ALA 4620.0102
PHE 4630.0102
ASN 4640.0100
GLY 4650.0098
ILE 4660.0088
PHE 4670.0081
ASN 4680.0090
GLY 4690.0087
LEU 4700.0075
SER 4710.0079
SER 4720.0069
LEU 4730.0061
GLU 4740.0052
VAL 4750.0043
LEU 4760.0049
LYS 4770.0044
MET 4780.0055
ALA 4790.0053
GLY 4800.0062
ASN 4810.0070
SER 4820.0082
PHE 4830.0089
GLN 4840.0102
GLU 4850.0107
ASN 4860.0095
PHE 4870.0095
LEU 4880.0086
PRO 4890.0094
ASP 4900.0093
ILE 4910.0088
PHE 4920.0080
THR 4930.0090
GLU 4940.0089
LEU 4950.0075
ARG 4960.0077
ASN 4970.0067
LEU 4980.0058
THR 4990.0047
PHE 5000.0039
LEU 5010.0046
ASP 5020.0043
LEU 5030.0054
SER 5040.0052
GLN 5050.0062
CYS 5060.0069
GLN 5070.0078
LEU 5080.0078
GLU 5090.0088
GLN 5100.0089
LEU 5110.0084
SER 5120.0093
PRO 5130.0090
THR 5140.0092
ALA 5150.0084
PHE 5160.0073
ASN 5170.0082
SER 5180.0083
LEU 5190.0070
SER 5200.0070
SER 5210.0061
LEU 5220.0051
GLN 5230.0039
VAL 5240.0032
LEU 5250.0040
ASN 5260.0039
MET 5270.0050
SER 5280.0049
HIS 5290.0060
ASN 5300.0069
ASN 5310.0081
PHE 5320.0078
PHE 5330.0085
SER 5340.0079
LEU 5350.0066
ASP 5360.0071
THR 5370.0064
PHE 5380.0075
PRO 5390.0075
TYR 5400.0062
LYS 5410.0068
CYS 5420.0073
LEU 5430.0060
ASN 5440.0061
SER 5450.0052
LEU 5460.0042
GLN 5470.0030
VAL 5480.0024
LEU 5490.0033
ASP 5500.0035
TYR 5510.0047
SER 5520.0048
LEU 5530.0060
ASN 5540.0067
HIS 5550.0078
ILE 5560.0072
MET 5570.0082
THR 5580.0080
SER 5590.0075
LYS 5600.0088
LYS 5610.0085
GLN 5620.0078
GLU 5630.0074
LEU 5640.0060
GLN 5650.0055
HIS 5660.0061
PHE 5670.0049
PRO 5680.0050
SER 5690.0044
SER 5700.0041
LEU 5710.0031
ALA 5720.0021
PHE 5730.0018
LEU 5740.0027
ASN 5750.0032
LEU 5760.0045
THR 5770.0050
GLN 5780.0064
ASN 5790.0067
ASP 5800.0081
PHE 5810.0078
ALA 5820.0088
CYS 5830.0087
THR 5840.0096
CYS 5850.0093
GLU 5860.0096
HIS 5870.0084
GLN 5880.0074
SER 5890.0068
PHE 5900.0063
LEU 5910.0062
GLN 5920.0053
TRP 5930.0046
ILE 5940.0044
LYS 5950.0040
ASP 5960.0031
GLN 5970.0026
ARG 5980.0027
GLN 5990.0019
LEU 6000.0019
LEU 6010.0027
VAL 6020.0028
GLU 6030.0041
VAL 6040.0047
GLU 6050.0061
ARG 6060.0060
MET 6070.0059
GLU 6080.0073
CYS 6090.0082
ALA 6100.0091
THR 6110.0101
PRO 6120.0106
SER 6130.0114
ASP 6140.0113
LYS 6150.0100
GLN 6160.0098
GLY 6170.0091
MET 6180.0085
PRO 6190.0071
VAL 6200.0065
LEU 6210.0056
SER 6220.0068
LEU 6230.0074
ASN 6240.0077
ILE 6250.0072
THR 6260.0080
CYS 6270.0093
GLU 10.0226
ALA 20.0206
ALA 30.0195
ALA 40.0174
LYS 50.0146
MET 60.0134
GLN 70.0119
ARG 80.0098
LEU 90.0073
VAL 100.0066
LEU 110.0052
LEU 120.0029
LEU 130.0023
ALA 140.0014
ILE 150.0028
SER 160.0030
LEU 170.0029
LEU 180.0027
LEU 190.0038
TYR 200.0044
GLN 210.0038
ASP 220.0037
LEU 230.0044
PRO 240.0042
VAL 250.0045
ARG 260.0045
SER 270.0035
GLU 280.0039
PHE 290.0033
GLU 300.0023
LEU 310.0024
ASP 320.0028
ARG 330.0019
ILE 340.0016
CYS 350.0021
GLY 360.0020
TYR 370.0020
GLY 380.0015
THR 390.0014
ALA 400.0014
ARG 410.0013
CYS 420.0022
ARG 430.0023
LYS 440.0031
LYS 450.0026
CYS 460.0016
ARG 470.0011
SER 480.0008
GLN 490.0008
GLU 500.0006
TYR 510.0013
ARG 520.0021
ILE 530.0027
GLY 540.0034
ARG 550.0037
CYS 560.0035
PRO 570.0042
ASN 580.0043
THR 590.0044
TYR 600.0035
ALA 610.0028
CYS 620.0023
CYS 630.0015
LEU 640.0013
ARG 650.0009
LYS 660.0017
TRP 670.0024
ASP 680.0025
GLU 690.0032
SER 700.0036
LEU 710.0037
LEU 720.0040
ASN 730.0043
ARG 740.0044
THR 750.0046
LYS 760.0037
PRO 770.0025
GLU 780.0022
ALA 790.0018
ALA 800.0022
ALA 810.0089
LYS 820.0071
LYS 830.0091
GLU 840.0093
MET 850.0099
ASN 860.0137
LEU 870.0133
SER 880.0179
VAL 890.0187
GLY 900.0231
LEU 910.0259
GLY 920.0302
GLY 930.0351
GLY 940.0339
SER 950.0305
ASN 960.0256
LEU 970.0217
SER 980.0184
VAL 990.0138
GLY 1000.0111
LEU 1010.0068
GLY 1020.0057
GLU 1030.0030
ILE 1040.0028
GLY 1050.0023
GLY 1060.0044
GLY 1070.0038
SER 1080.0025
LYS 1090.0028
LEU 1100.0041
LEU 1110.0070
ASP 1120.0115
ILE 1130.0146
ASN 1140.0189
LEU 1150.0212
GLY 1160.0267
ARG 1170.0291
GLY 1180.0304
GLY 1190.0283
GLY 1200.0266
SER 1210.0250
MET 1220.0224
VAL 1230.0189
ASP 1240.0182
LEU 1250.0143
THR 1260.0160
PHE 1270.0135
GLY 1280.0162
GLY 1290.0177
VAL 1300.0165
GLY 1310.0204
GLY 1320.0185
GLY 1330.0185
SER 1340.0142
THR 1350.0132
PHE 1360.0086
THR 1370.0066
PHE 1380.0031
PHE 1390.0014
PRO 1400.0037
LEU 1410.0070
VAL 1420.0100
ILE 1430.0120
GLY 1440.0155
GLY 1450.0179
GLY 1460.0204
SER 1470.0197
ASP 1480.0186
ALA 1490.0152
MET 1500.0112
TYR 1510.0075
LEU 1520.0041
GLY 1530.0019
PHE 1540.0025
ALA 1550.0063
ALA 1560.0102
GLY 1570.0135
GLY 1580.0179
GLY 1590.0196
SER 1600.0222
ALA 1610.0214
GLY 1620.0225
GLY 1630.0218
GLU 1640.0195
ASN 1650.0162
HIS 1660.0164
VAL 1670.0138
ALA 1680.0172
PHE 1690.0172
GLY 1700.0209
PRO 1710.0261
GLY 1720.0241
PRO 1730.0200
GLY 1740.0160
VAL 1750.0135
ASP 1760.0155
LEU 1770.0130
THR 1780.0169
PHE 1790.0170
GLY 1800.0218
GLY 1810.0237
VAL 1820.0207
GLN 1830.0185
PHE 1840.0139
ALA 1850.0137
MET 1860.0100
VAL 1870.0097
ASN 1880.0133
ASN 1890.0129
GLY 1900.0207
PRO 1910.0310
GLY 1920.0415
PRO 1930.0533
GLY 1940.0620
GLU 1950.0531
SER 1960.0509
PHE 1970.0540
THR 1980.0554
ALA 1990.0627
GLN 2000.0655
PRO 2010.0747
ALA 2020.0726
ASP 2030.0670
MET 2040.0702
GLN 2050.0705
ALA 2060.0618
GLY 2070.0583
ILE 2080.0576
LYS 2090.0568
GLY 2100.0570
PRO 2110.0539
GLY 2120.0587
PRO 2130.0566
GLY 2140.0397
GLY 2150.0297
SER 2160.0235
ILE 2170.0238
GLN 2180.0211
VAL 2190.0215
ILE 2200.0195
ASN 2210.0175
GLY 2220.0166
SER 2230.0145
THR 2240.0130
ILE 2250.0127
GLY 2260.0124
THR 2270.0134
GLY 2280.0123
SER 2290.0116
LYS 2300.0092
LYS 2310.0093
THR 2320.0064
ILE 2330.0048
LEU 2340.0018
ILE 2350.0037
TYR 2360.0046
SER 2370.0051
ILE 2380.0063
ILE 2390.0060
GLY 2400.0074
VAL 2410.0075
LYS 2420.0074
LYS 2430.0080
GLY 2440.0088
THR 2450.0084
LEU 2460.0086
ALA 2470.0074
TRP 2480.0056
ALA 2490.0047
ARG 2500.0030
THR 2510.0014
GLY 2520.0010
PHE 2530.0003
SER 2540.0014
PRO 2550.0018
ALA 2560.0030
LYS 2570.0038
LYS 2580.0049
LEU 2590.0052
ASN 2600.0066
ALA 2610.0057
GLY 2620.0042
VAL 2630.0034
VAL 2640.0040
ARG 2650.0046
VAL 2660.0035
PHE 2670.0030
PHE 2680.0021
LEU 2690.0032
ASN 2700.0037
GLN 2710.0046
LYS 2720.0039
LYS 2730.0042
ALA 2740.0045
LYS 2750.0039
ASP 2760.0039
VAL 2770.0050
LEU 2780.0053
ARG 2790.0046
LYS 2800.0048
THR 2810.0065
SER 2820.0064
ARG 2830.0046
PRO 2840.0041
MET 2850.0036
VAL 2860.0029
ASP 2870.0039
LEU 2880.0078
THR 2890.0122
PHE 2900.0165
GLY 2910.0241
GLY 2920.0306

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.