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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 20  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0550
GLU 270.0074
PRO 280.0077
CYS 290.0069
VAL 300.0069
GLU 310.0063
VAL 320.0059
VAL 330.0052
PRO 340.0055
ASN 350.0050
ILE 360.0043
THR 370.0047
TYR 380.0054
GLN 390.0059
CYS 400.0061
MET 410.0064
GLU 420.0072
LEU 430.0074
ASN 440.0073
PHE 450.0066
TYR 460.0064
LYS 470.0058
ILE 480.0053
PRO 490.0059
ASP 500.0060
ASN 510.0066
LEU 520.0058
PRO 530.0054
PHE 540.0046
SER 550.0041
THR 560.0041
LYS 570.0033
ASN 580.0038
LEU 590.0043
ASP 600.0049
LEU 610.0051
SER 620.0054
PHE 630.0062
ASN 640.0062
PRO 650.0062
LEU 660.0054
ARG 670.0052
HIS 680.0046
LEU 690.0040
GLY 700.0038
SER 710.0034
TYR 720.0035
SER 730.0040
PHE 740.0037
PHE 750.0039
SER 760.0045
PHE 770.0038
PRO 780.0032
GLU 790.0029
LEU 800.0029
GLN 810.0024
VAL 820.0030
LEU 830.0034
ASP 840.0042
LEU 850.0044
SER 860.0050
ARG 870.0054
CYS 880.0052
GLU 890.0054
ILE 900.0047
GLN 910.0047
THR 920.0037
ILE 930.0031
GLU 940.0027
ASP 950.0020
GLY 960.0022
ALA 970.0028
TYR 980.0024
GLN 990.0022
SER 1000.0027
LEU 1010.0022
SER 1020.0016
HIS 1030.0016
LEU 1040.0018
SER 1050.0017
THR 1060.0025
LEU 1070.0029
ILE 1080.0038
LEU 1090.0040
THR 1100.0048
GLY 1110.0054
ASN 1120.0049
PRO 1130.0050
ILE 1140.0041
GLN 1150.0039
SER 1160.0031
LEU 1170.0025
ALA 1180.0017
LEU 1190.0008
GLY 1200.0010
ALA 1210.0017
PHE 1220.0013
SER 1230.0009
GLY 1240.0012
LEU 1250.0009
SER 1260.0006
SER 1270.0006
LEU 1280.0012
GLN 1290.0017
LYS 1300.0025
LEU 1310.0028
VAL 1320.0038
ALA 1330.0039
VAL 1340.0046
GLU 1350.0050
THR 1360.0044
ASN 1370.0051
LEU 1380.0044
ALA 1390.0047
SER 1400.0043
LEU 1410.0038
GLU 1420.0036
ASN 1430.0030
PHE 1440.0027
PRO 1450.0017
ILE 1460.0017
GLY 1470.0020
HIS 1480.0013
LEU 1490.0011
LYS 1500.0017
THR 1510.0012
LEU 1520.0018
LYS 1530.0024
GLU 1540.0031
LEU 1550.0034
ASN 1560.0041
VAL 1570.0043
ALA 1580.0052
HIS 1590.0059
ASN 1600.0055
LEU 1610.0058
ILE 1620.0060
GLN 1630.0068
SER 1640.0066
PHE 1650.0064
LYS 1660.0060
LEU 1670.0050
PRO 1680.0044
GLU 1690.0042
TYR 1700.0032
PHE 1710.0036
SER 1720.0039
ASN 1730.0030
LEU 1740.0027
THR 1750.0030
ASN 1760.0025
LEU 1770.0030
GLU 1780.0034
HIS 1790.0039
LEU 1800.0043
ASP 1810.0049
LEU 1820.0055
SER 1830.0063
SER 1840.0070
ASN 1850.0068
LYS 1860.0075
ILE 1870.0078
GLN 1880.0088
SER 1890.0088
ILE 1900.0081
TYR 1910.0084
CYS 1920.0082
THR 1930.0076
ASP 1940.0069
LEU 1950.0066
ARG 1960.0065
VAL 1970.0054
LEU 1980.0055
HIS 1990.0064
GLN 2000.0058
MET 2010.0051
PRO 2020.0055
LEU 2030.0046
LEU 2040.0042
ASN 2050.0039
LEU 2060.0044
SER 2070.0046
LEU 2080.0053
ASP 2090.0059
LEU 2100.0068
SER 2110.0073
LEU 2120.0081
ASN 2130.0082
PRO 2140.0093
MET 2150.0092
ASN 2160.0101
PHE 2170.0099
ILE 2180.0091
GLN 2190.0095
PRO 2200.0098
GLY 2210.0092
ALA 2220.0083
PHE 2230.0077
LYS 2240.0081
GLU 2250.0075
ILE 2260.0066
ARG 2270.0058
LEU 2280.0054
HIS 2290.0046
LYS 2300.0051
LEU 2310.0060
THR 2320.0064
LEU 2330.0075
ARG 2340.0079
ASN 2350.0090
ASN 2360.0091
PHE 2370.0100
ASP 2380.0111
SER 2390.0115
LEU 2400.0113
ASN 2410.0118
VAL 2420.0110
MET 2430.0101
LYS 2440.0105
THR 2450.0107
CYS 2460.0096
ILE 2470.0092
GLN 2480.0098
GLY 2490.0094
LEU 2500.0084
ALA 2510.0088
GLY 2520.0082
LEU 2530.0073
GLU 2540.0064
VAL 2550.0059
HIS 2560.0050
ARG 2570.0052
LEU 2580.0062
VAL 2590.0065
LEU 2600.0076
GLY 2610.0082
GLU 2620.0087
PHE 2630.0090
ARG 2640.0099
ASN 2650.0105
GLU 2660.0105
GLY 2670.0112
ASN 2680.0109
LEU 2690.0110
GLU 2700.0120
LYS 2710.0116
PHE 2720.0106
ASP 2730.0108
LYS 2740.0102
SER 2750.0105
ALA 2760.0100
LEU 2770.0091
GLU 2780.0096
GLY 2790.0094
LEU 2800.0083
CYS 2810.0084
ASN 2820.0087
LEU 2830.0077
THR 2840.0068
ILE 2850.0062
GLU 2860.0052
GLU 2870.0050
PHE 2880.0059
ARG 2890.0062
LEU 2900.0072
ALA 2910.0074
TYR 2920.0083
LEU 2930.0092
ASP 2940.0102
TYR 2950.0106
TYR 2960.0104
LEU 2970.0097
ASP 2980.0099
GLY 2990.0090
ILE 3000.0084
ILE 3010.0087
ASP 3020.0088
LEU 3030.0087
PHE 3040.0077
ASN 3050.0078
CYS 3060.0078
LEU 3070.0068
THR 3080.0063
ASN 3090.0057
VAL 3100.0053
SER 3110.0042
SER 3120.0043
PHE 3130.0052
SER 3140.0056
LEU 3150.0065
VAL 3160.0069
SER 3170.0080
VAL 3180.0082
THR 3190.0089
ILE 3200.0085
GLU 3210.0090
ARG 3220.0084
VAL 3230.0072
LYS 3240.0069
ASP 3250.0070
PHE 3260.0060
SER 3270.0057
TYR 3280.0060
ASN 3290.0053
PHE 3300.0053
GLY 3310.0047
TRP 3320.0044
GLN 3330.0034
HIS 3340.0037
LEU 3350.0045
GLU 3360.0049
LEU 3370.0057
VAL 3380.0062
ASN 3390.0073
CYS 3400.0075
LYS 3410.0083
PHE 3420.0078
GLY 3430.0083
GLN 3440.0073
PHE 3450.0062
PRO 3460.0058
THR 3470.0053
LEU 3480.0048
LYS 3490.0042
LEU 3500.0039
LYS 3510.0033
SER 3520.0030
LEU 3530.0031
LYS 3540.0023
ARG 3550.0030
LEU 3560.0038
THR 3570.0042
PHE 3580.0051
THR 3590.0056
SER 3600.0066
ASN 3610.0067
LYS 3620.0080
GLY 3630.0081
GLY 3640.0076
ASN 3650.0066
ALA 3660.0061
PHE 3670.0053
SER 3680.0049
GLU 3690.0041
VAL 3700.0038
ASP 3710.0031
LEU 3720.0029
PRO 3730.0020
SER 3740.0019
LEU 3750.0023
GLU 3760.0022
PHE 3770.0029
LEU 3780.0035
ASP 3790.0042
LEU 3800.0047
SER 3810.0053
ARG 3820.0058
ASN 3830.0059
GLY 3840.0065
LEU 3850.0058
SER 3860.0060
PHE 3870.0051
LYS 3880.0050
GLY 3890.0044
CYS 3900.0043
CYS 3910.0039
SER 3920.0031
GLN 3930.0025
SER 3940.0027
ASP 3950.0034
PHE 3960.0032
GLY 3970.0025
THR 3980.0022
ILE 3990.0016
SER 4000.0017
LEU 4010.0026
LYS 4020.0031
TYR 4030.0036
LEU 4040.0040
ASP 4050.0045
LEU 4060.0049
SER 4070.0054
PHE 4080.0059
ASN 4090.0058
GLY 4100.0060
VAL 4110.0058
ILE 4120.0052
THR 4130.0050
MET 4140.0046
SER 4150.0042
SER 4160.0038
ASN 4170.0036
PHE 4180.0034
LEU 4190.0028
GLY 4200.0025
LEU 4210.0029
GLU 4220.0030
GLN 4230.0031
LEU 4240.0036
GLU 4250.0041
HIS 4260.0045
LEU 4270.0048
ASP 4280.0051
PHE 4290.0053
GLN 4300.0057
HIS 4310.0060
SER 4320.0056
ASN 4330.0057
LEU 4340.0053
LYS 4350.0052
GLN 4360.0049
MET 4370.0048
SER 4380.0048
GLU 4390.0044
PHE 4400.0042
SER 4410.0043
VAL 4420.0043
PHE 4430.0043
LEU 4440.0040
SER 4450.0036
LEU 4460.0040
ARG 4470.0041
ASN 4480.0043
LEU 4490.0046
ILE 4500.0052
TYR 4510.0054
LEU 4520.0054
ASP 4530.0056
ILE 4540.0055
SER 4550.0059
HIS 4560.0060
THR 4570.0055
HIS 4580.0055
THR 4590.0052
ARG 4600.0051
VAL 4610.0050
ALA 4620.0048
PHE 4630.0046
ASN 4640.0048
GLY 4650.0046
ILE 4660.0047
PHE 4670.0048
ASN 4680.0045
GLY 4690.0044
LEU 4700.0048
SER 4710.0051
SER 4720.0054
LEU 4730.0055
GLU 4740.0061
VAL 4750.0062
LEU 4760.0060
LYS 4770.0062
MET 4780.0059
ALA 4790.0063
GLY 4800.0062
ASN 4810.0057
SER 4820.0054
PHE 4830.0052
GLN 4840.0049
GLU 4850.0050
ASN 4860.0053
PHE 4870.0052
LEU 4880.0054
PRO 4890.0051
ASP 4900.0052
ILE 4910.0051
PHE 4920.0055
THR 4930.0055
GLU 4940.0053
LEU 4950.0057
ARG 4960.0061
ASN 4970.0065
LEU 4980.0065
THR 4990.0071
PHE 5000.0070
LEU 5010.0066
ASP 5020.0067
LEU 5030.0063
SER 5040.0066
GLN 5050.0064
CYS 5060.0059
GLN 5070.0057
LEU 5080.0056
GLU 5090.0056
GLN 5100.0054
LEU 5110.0055
SER 5120.0053
PRO 5130.0058
THR 5140.0058
ALA 5150.0057
PHE 5160.0063
ASN 5170.0064
SER 5180.0064
LEU 5190.0067
SER 5200.0073
SER 5210.0075
LEU 5220.0074
GLN 5230.0080
VAL 5240.0078
LEU 5250.0073
ASN 5260.0072
MET 5270.0068
SER 5280.0071
HIS 5290.0068
ASN 5300.0063
ASN 5310.0060
PHE 5320.0060
PHE 5330.0060
SER 5340.0061
LEU 5350.0066
ASP 5360.0063
THR 5370.0069
PHE 5380.0066
PRO 5390.0064
TYR 5400.0071
LYS 5410.0074
CYS 5420.0074
LEU 5430.0076
ASN 5440.0083
SER 5450.0084
LEU 5460.0082
GLN 5470.0088
VAL 5480.0085
LEU 5490.0079
ASP 5500.0078
TYR 5510.0074
SER 5520.0077
LEU 5530.0074
ASN 5540.0067
HIS 5550.0064
ILE 5560.0065
MET 5570.0065
THR 5580.0063
SER 5590.0063
LYS 5600.0056
LYS 5610.0058
GLN 5620.0064
GLU 5630.0067
LEU 5640.0072
GLN 5650.0078
HIS 5660.0076
PHE 5670.0080
PRO 5680.0084
SER 5690.0092
SER 5700.0093
LEU 5710.0089
ALA 5720.0096
PHE 5730.0092
LEU 5740.0086
ASN 5750.0085
LEU 5760.0081
THR 5770.0085
GLN 5780.0081
ASN 5790.0074
ASP 5800.0070
PHE 5810.0070
ALA 5820.0062
CYS 5830.0066
THR 5840.0059
CYS 5850.0058
GLU 5860.0053
HIS 5870.0060
GLN 5880.0066
SER 5890.0067
PHE 5900.0070
LEU 5910.0074
GLN 5920.0079
TRP 5930.0080
ILE 5940.0083
LYS 5950.0089
ASP 5960.0091
GLN 5970.0092
ARG 5980.0096
GLN 5990.0102
LEU 6000.0095
LEU 6010.0093
VAL 6020.0097
GLU 6030.0098
VAL 6040.0098
GLU 6050.0100
ARG 6060.0094
MET 6070.0089
GLU 6080.0085
CYS 6090.0076
ALA 6100.0072
THR 6110.0063
PRO 6120.0057
SER 6130.0066
ASP 6140.0070
LYS 6150.0072
GLN 6160.0078
GLY 6170.0088
MET 6180.0089
PRO 6190.0091
VAL 6200.0084
LEU 6210.0091
SER 6220.0092
LEU 6230.0083
ASN 6240.0081
ILE 6250.0075
THR 6260.0073
CYS 6270.0067
GLU 10.0041
ALA 20.0032
ALA 30.0038
ALA 40.0036
LYS 50.0025
MET 60.0023
GLN 70.0028
ARG 80.0022
LEU 90.0013
VAL 100.0018
LEU 110.0017
LEU 120.0009
LEU 130.0012
ALA 140.0015
ILE 150.0010
SER 160.0008
LEU 170.0013
LEU 180.0012
LEU 190.0006
TYR 200.0011
GLN 210.0016
ASP 220.0013
LEU 230.0008
PRO 240.0014
VAL 250.0015
ARG 260.0019
SER 270.0022
GLU 280.0019
PHE 290.0025
GLU 300.0028
LEU 310.0024
ASP 320.0019
ARG 330.0024
ILE 340.0026
CYS 350.0024
GLY 360.0030
TYR 370.0035
GLY 380.0036
THR 390.0043
ALA 400.0035
ARG 410.0029
CYS 420.0024
ARG 430.0023
LYS 440.0019
LYS 450.0019
CYS 460.0022
ARG 470.0024
SER 480.0022
GLN 490.0029
GLU 500.0028
TYR 510.0025
ARG 520.0022
ILE 530.0024
GLY 540.0020
ARG 550.0017
CYS 560.0017
PRO 570.0015
ASN 580.0015
THR 590.0013
TYR 600.0016
ALA 610.0018
CYS 620.0022
CYS 630.0026
LEU 640.0031
ARG 650.0035
LYS 660.0041
TRP 670.0051
ASP 680.0049
GLU 690.0052
SER 700.0055
LEU 710.0064
LEU 720.0066
ASN 730.0060
ARG 740.0062
THR 750.0070
LYS 760.0054
PRO 770.0049
GLU 780.0049
ALA 790.0053
ALA 800.0061
ALA 810.0182
LYS 820.0207
LYS 830.0218
GLU 840.0204
MET 850.0232
ASN 860.0181
LEU 870.0176
SER 880.0127
VAL 890.0109
GLY 900.0078
LEU 910.0048
GLY 920.0059
GLY 930.0089
GLY 940.0077
SER 950.0052
ASN 960.0055
LEU 970.0091
SER 980.0116
VAL 990.0168
GLY 1000.0194
LEU 1010.0245
GLY 1020.0266
GLU 1030.0301
ILE 1040.0335
GLY 1050.0372
GLY 1060.0414
GLY 1070.0379
SER 1080.0341
LYS 1090.0315
LEU 1100.0281
LEU 1110.0254
ASP 1120.0235
ILE 1130.0187
ASN 1140.0184
LEU 1150.0140
GLY 1160.0133
ARG 1170.0146
GLY 1180.0103
GLY 1190.0072
GLY 1200.0043
SER 1210.0046
MET 1220.0080
VAL 1230.0110
ASP 1240.0149
LEU 1250.0191
THR 1260.0215
PHE 1270.0267
GLY 1280.0279
GLY 1290.0341
VAL 1300.0376
GLY 1310.0453
GLY 1320.0482
GLY 1330.0492
SER 1340.0458
THR 1350.0444
PHE 1360.0385
THR 1370.0380
PHE 1380.0323
PHE 1390.0320
PRO 1400.0265
LEU 1410.0265
VAL 1420.0238
ILE 1430.0225
GLY 1440.0223
GLY 1450.0197
GLY 1460.0216
SER 1470.0226
ASP 1480.0191
ALA 1490.0224
MET 1500.0216
TYR 1510.0264
LEU 1520.0278
GLY 1530.0334
PHE 1540.0362
ALA 1550.0416
ALA 1560.0466
GLY 1570.0503
GLY 1580.0550
GLY 1590.0545
SER 1600.0541
ALA 1610.0497
GLY 1620.0461
GLY 1630.0404
GLU 1640.0338
ASN 1650.0311
HIS 1660.0249
VAL 1670.0221
ALA 1680.0173
PHE 1690.0131
GLY 1700.0106
PRO 1710.0070
GLY 1720.0098
PRO 1730.0115
GLY 1740.0163
VAL 1750.0183
ASP 1760.0217
LEU 1770.0266
THR 1780.0301
PHE 1790.0354
GLY 1800.0394
GLY 1810.0379
VAL 1820.0378
GLN 1830.0321
PHE 1840.0307
ALA 1850.0262
MET 1860.0229
VAL 1870.0206
ASN 1880.0167
ASN 1890.0187
GLY 1900.0152
PRO 1910.0099
GLY 1920.0082
PRO 1930.0182
GLY 1940.0237
GLU 1950.0171
SER 1960.0199
PHE 1970.0129
THR 1980.0096
ALA 1990.0142
GLN 2000.0192
PRO 2010.0274
ALA 2020.0311
ASP 2030.0235
MET 2040.0273
GLN 2050.0338
ALA 2060.0279
GLY 2070.0226
ILE 2080.0240
LYS 2090.0297
GLY 2100.0249
PRO 2110.0293
GLY 2120.0329
PRO 2130.0284
GLY 2140.0280
GLY 2150.0291
SER 2160.0288
ILE 2170.0216
GLN 2180.0198
VAL 2190.0170
ILE 2200.0136
ASN 2210.0144
GLY 2220.0143
SER 2230.0148
THR 2240.0143
ILE 2250.0151
GLY 2260.0157
THR 2270.0135
GLY 2280.0132
SER 2290.0123
LYS 2300.0145
LYS 2310.0142
THR 2320.0152
ILE 2330.0127
LEU 2340.0132
ILE 2350.0119
TYR 2360.0100
SER 2370.0095
ILE 2380.0086
ILE 2390.0075
GLY 2400.0078
VAL 2410.0043
LYS 2420.0045
LYS 2430.0053
GLY 2440.0061
THR 2450.0058
LEU 2460.0053
ALA 2470.0061
TRP 2480.0083
ALA 2490.0091
ARG 2500.0117
THR 2510.0133
GLY 2520.0154
PHE 2530.0159
SER 2540.0185
PRO 2550.0190
ALA 2560.0223
LYS 2570.0245
LYS 2580.0211
LEU 2590.0236
ASN 2600.0245
ALA 2610.0252
GLY 2620.0221
VAL 2630.0214
VAL 2640.0190
ARG 2650.0175
VAL 2660.0156
PHE 2670.0126
PHE 2680.0132
LEU 2690.0110
ASN 2700.0123
GLN 2710.0084
LYS 2720.0096
LYS 2730.0106
ALA 2740.0089
LYS 2750.0082
ASP 2760.0098
VAL 2770.0101
LEU 2780.0089
ARG 2790.0092
LYS 2800.0106
THR 2810.0111
SER 2820.0091
ARG 2830.0102
PRO 2840.0092
MET 2850.0090
VAL 2860.0112
ASP 2870.0159
LEU 2880.0166
THR 2890.0225
PHE 2900.0293
GLY 2910.0392
GLY 2920.0443

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.