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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 21  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0743
GLU 270.0299
PRO 280.0302
CYS 290.0271
VAL 300.0283
GLU 310.0283
VAL 320.0277
VAL 330.0274
PRO 340.0281
ASN 350.0246
ILE 360.0223
THR 370.0221
TYR 380.0226
GLN 390.0227
CYS 400.0224
MET 410.0217
GLU 420.0233
LEU 430.0255
ASN 440.0249
PHE 450.0233
TYR 460.0231
LYS 470.0213
ILE 480.0188
PRO 490.0217
ASP 500.0221
ASN 510.0252
LEU 520.0230
PRO 530.0219
PHE 540.0181
SER 550.0185
THR 560.0185
LYS 570.0164
ASN 580.0168
LEU 590.0166
ASP 600.0170
LEU 610.0170
SER 620.0166
PHE 630.0181
ASN 640.0195
PRO 650.0198
LEU 660.0180
ARG 670.0171
HIS 680.0163
LEU 690.0140
GLY 700.0146
SER 710.0125
TYR 720.0119
SER 730.0136
PHE 740.0123
PHE 750.0124
SER 760.0151
PHE 770.0138
PRO 780.0110
GLU 790.0126
LEU 800.0123
GLN 810.0119
VAL 820.0119
LEU 830.0111
ASP 840.0120
LEU 850.0117
SER 860.0118
ARG 870.0134
CYS 880.0147
GLU 890.0148
ILE 900.0133
GLN 910.0139
THR 920.0136
ILE 930.0112
GLU 940.0121
ASP 950.0106
GLY 960.0087
ALA 970.0098
TYR 980.0075
GLN 990.0064
SER 1000.0072
LEU 1010.0069
SER 1020.0052
HIS 1030.0080
LEU 1040.0074
SER 1050.0084
THR 1060.0081
LEU 1070.0069
ILE 1080.0079
LEU 1090.0075
THR 1100.0082
GLY 1110.0097
ASN 1120.0105
PRO 1130.0113
ILE 1140.0106
GLN 1150.0127
SER 1160.0128
LEU 1170.0100
ALA 1180.0106
LEU 1190.0095
GLY 1200.0084
ALA 1210.0077
PHE 1220.0048
SER 1230.0051
GLY 1240.0039
LEU 1250.0039
SER 1260.0050
SER 1270.0069
LEU 1280.0058
GLN 1290.0074
LYS 1300.0065
LEU 1310.0045
VAL 1320.0052
ALA 1330.0044
VAL 1340.0052
GLU 1350.0063
THR 1360.0066
ASN 1370.0072
LEU 1380.0062
ALA 1390.0076
SER 1400.0074
LEU 1410.0066
GLU 1420.0088
ASN 1430.0086
PHE 1440.0064
PRO 1450.0065
ILE 1460.0054
GLY 1470.0078
HIS 1480.0074
LEU 1490.0060
LYS 1500.0082
THR 1510.0080
LEU 1520.0068
LYS 1530.0080
GLU 1540.0067
LEU 1550.0049
ASN 1560.0043
VAL 1570.0034
ALA 1580.0038
HIS 1590.0046
ASN 1600.0047
LEU 1610.0058
ILE 1620.0056
GLN 1630.0068
SER 1640.0074
PHE 1650.0072
LYS 1660.0086
LEU 1670.0085
PRO 1680.0095
GLU 1690.0109
TYR 1700.0094
PHE 1710.0088
SER 1720.0111
ASN 1730.0103
LEU 1740.0087
THR 1750.0106
ASN 1760.0098
LEU 1770.0082
GLU 1780.0087
HIS 1790.0071
LEU 1800.0058
ASP 1810.0046
LEU 1820.0040
SER 1830.0035
SER 1840.0033
ASN 1850.0038
LYS 1860.0049
ILE 1870.0055
GLN 1880.0061
SER 1890.0069
ILE 1900.0074
TYR 1910.0089
CYS 1920.0102
THR 1930.0110
ASP 1940.0095
LEU 1950.0095
ARG 1960.0112
VAL 1970.0108
LEU 1980.0101
HIS 1990.0119
GLN 2000.0129
MET 2010.0122
PRO 2020.0130
LEU 2030.0130
LEU 2040.0109
ASN 2050.0104
LEU 2060.0085
SER 2070.0075
LEU 2080.0064
ASP 2090.0051
LEU 2100.0044
SER 2110.0036
LEU 2120.0026
ASN 2130.0035
PRO 2140.0041
MET 2150.0048
ASN 2160.0057
PHE 2170.0065
ILE 2180.0068
GLN 2190.0082
PRO 2200.0085
GLY 2210.0095
ALA 2220.0091
PHE 2230.0087
LYS 2240.0101
GLU 2250.0110
ILE 2260.0098
ARG 2270.0097
LEU 2280.0084
HIS 2290.0085
LYS 2300.0071
LEU 2310.0060
THR 2320.0049
LEU 2330.0041
ARG 2340.0029
ASN 2350.0021
ASN 2360.0031
PHE 2370.0033
ASP 2380.0034
SER 2390.0034
LEU 2400.0032
ASN 2410.0043
VAL 2420.0046
MET 2430.0038
LYS 2440.0043
THR 2450.0055
CYS 2460.0054
ILE 2470.0052
GLN 2480.0062
GLY 2490.0069
LEU 2500.0068
ALA 2510.0076
GLY 2520.0090
LEU 2530.0082
GLU 2540.0088
VAL 2550.0077
HIS 2560.0083
ARG 2570.0069
LEU 2580.0058
VAL 2590.0047
LEU 2600.0035
GLY 2610.0024
GLU 2620.0015
PHE 2630.0014
ARG 2640.0012
ASN 2650.0010
GLU 2660.0008
GLY 2670.0014
ASN 2680.0012
LEU 2690.0017
GLU 2700.0022
LYS 2710.0021
PHE 2720.0014
ASP 2730.0018
LYS 2740.0018
SER 2750.0029
ALA 2760.0028
LEU 2770.0032
GLU 2780.0040
GLY 2790.0051
LEU 2800.0050
CYS 2810.0056
ASN 2820.0072
LEU 2830.0070
THR 2840.0077
ILE 2850.0069
GLU 2860.0076
GLU 2870.0064
PHE 2880.0052
ARG 2890.0047
LEU 2900.0035
ALA 2910.0037
TYR 2920.0024
LEU 2930.0014
ASP 2940.0009
TYR 2950.0006
TYR 2960.0013
LEU 2970.0010
ASP 2980.0015
GLY 2990.0010
ILE 3000.0007
ILE 3010.0005
ASP 3020.0015
LEU 3030.0016
PHE 3040.0024
ASN 3050.0027
CYS 3060.0037
LEU 3070.0039
THR 3080.0036
ASN 3090.0047
VAL 3100.0050
SER 3110.0057
SER 3120.0056
PHE 3130.0046
SER 3140.0047
LEU 3150.0040
VAL 3160.0046
SER 3170.0040
VAL 3180.0030
THR 3190.0027
ILE 3200.0022
GLU 3210.0027
ARG 3220.0024
VAL 3230.0025
LYS 3240.0025
ASP 3250.0014
PHE 3260.0019
SER 3270.0017
TYR 3280.0007
ASN 3290.0014
PHE 3300.0023
GLY 3310.0034
TRP 3320.0039
GLN 3330.0049
HIS 3340.0052
LEU 3350.0045
GLU 3360.0053
LEU 3370.0049
VAL 3380.0059
ASN 3390.0060
CYS 3400.0049
LYS 3410.0048
PHE 3420.0042
GLY 3430.0043
GLN 3440.0048
PHE 3450.0049
PRO 3460.0038
THR 3470.0033
LEU 3480.0030
LYS 3490.0023
LEU 3500.0024
LYS 3510.0022
SER 3520.0029
LEU 3530.0035
LYS 3540.0046
ARG 3550.0054
LEU 3560.0052
THR 3570.0060
PHE 3580.0060
THR 3590.0071
SER 3600.0077
ASN 3610.0067
LYS 3620.0069
GLY 3630.0063
GLY 3640.0062
ASN 3650.0065
ALA 3660.0066
PHE 3670.0062
SER 3680.0054
GLU 3690.0050
VAL 3700.0042
ASP 3710.0036
LEU 3720.0034
PRO 3730.0031
SER 3740.0034
LEU 3750.0043
GLU 3760.0050
PHE 3770.0056
LEU 3780.0058
ASP 3790.0068
LEU 3800.0070
SER 3810.0082
ARG 3820.0086
ASN 3830.0083
GLY 3840.0087
LEU 3850.0079
SER 3860.0079
PHE 3870.0077
LYS 3880.0076
GLY 3890.0070
CYS 3900.0068
CYS 3910.0062
SER 3920.0058
GLN 3930.0051
SER 3940.0051
ASP 3950.0054
PHE 3960.0051
GLY 3970.0046
THR 3980.0046
ILE 3990.0044
SER 4000.0045
LEU 4010.0052
LYS 4020.0054
TYR 4030.0061
LEU 4040.0065
ASP 4050.0073
LEU 4060.0077
SER 4070.0084
PHE 4080.0094
ASN 4090.0093
GLY 4100.0096
VAL 4110.0093
ILE 4120.0083
THR 4130.0081
MET 4140.0072
SER 4150.0069
SER 4160.0061
ASN 4170.0057
PHE 4180.0056
LEU 4190.0052
GLY 4200.0050
LEU 4210.0053
GLU 4220.0048
GLN 4230.0051
LEU 4240.0055
GLU 4250.0056
HIS 4260.0061
LEU 4270.0066
ASP 4280.0076
PHE 4290.0081
GLN 4300.0088
HIS 4310.0097
SER 4320.0091
ASN 4330.0093
LEU 4340.0083
LYS 4350.0085
GLN 4360.0080
MET 4370.0069
SER 4380.0069
GLU 4390.0072
PHE 4400.0062
SER 4410.0054
VAL 4420.0059
PHE 4430.0054
LEU 4440.0050
SER 4450.0049
LEU 4460.0051
ARG 4470.0045
ASN 4480.0052
LEU 4490.0055
ILE 4500.0058
TYR 4510.0063
LEU 4520.0063
ASP 4530.0072
ILE 4540.0074
SER 4550.0080
HIS 4560.0090
THR 4570.0090
HIS 4580.0092
THR 4590.0079
ARG 4600.0078
VAL 4610.0065
ALA 4620.0069
PHE 4630.0062
ASN 4640.0055
GLY 4650.0051
ILE 4660.0052
PHE 4670.0048
ASN 4680.0046
GLY 4690.0045
LEU 4700.0048
SER 4710.0048
SER 4720.0054
LEU 4730.0055
GLU 4740.0062
VAL 4750.0066
LEU 4760.0059
LYS 4770.0065
MET 4780.0063
ALA 4790.0068
GLY 4800.0077
ASN 4810.0075
SER 4820.0073
PHE 4830.0069
GLN 4840.0083
GLU 4850.0090
ASN 4860.0074
PHE 4870.0068
LEU 4880.0056
PRO 4890.0060
ASP 4900.0057
ILE 4910.0050
PHE 4920.0044
THR 4930.0049
GLU 4940.0046
LEU 4950.0049
ARG 4960.0059
ASN 4970.0064
LEU 4980.0061
THR 4990.0074
PHE 5000.0072
LEU 5010.0058
ASP 5020.0059
LEU 5030.0051
SER 5040.0058
GLN 5050.0066
CYS 5060.0062
GLN 5070.0065
LEU 5080.0057
GLU 5090.0065
GLN 5100.0069
LEU 5110.0064
SER 5120.0072
PRO 5130.0082
THR 5140.0076
ALA 5150.0059
PHE 5160.0062
ASN 5170.0074
SER 5180.0069
LEU 5190.0067
SER 5200.0086
SER 5210.0088
LEU 5220.0079
GLN 5230.0094
VAL 5240.0084
LEU 5250.0064
ASN 5260.0061
MET 5270.0049
SER 5280.0053
HIS 5290.0057
ASN 5300.0052
ASN 5310.0059
PHE 5320.0057
PHE 5330.0068
SER 5340.0076
LEU 5350.0077
ASP 5360.0089
THR 5370.0096
PHE 5380.0105
PRO 5390.0084
TYR 5400.0089
LYS 5410.0112
CYS 5420.0103
LEU 5430.0096
ASN 5440.0116
SER 5450.0113
LEU 5460.0101
GLN 5470.0116
VAL 5480.0099
LEU 5490.0079
ASP 5500.0070
TYR 5510.0056
SER 5520.0059
LEU 5530.0054
ASN 5540.0047
HIS 5550.0052
ILE 5560.0058
MET 5570.0071
THR 5580.0091
SER 5590.0103
LYS 5600.0118
LYS 5610.0125
GLN 5620.0141
GLU 5630.0138
LEU 5640.0128
GLN 5650.0147
HIS 5660.0133
PHE 5670.0120
PRO 5680.0129
SER 5690.0150
SER 5700.0141
LEU 5710.0125
ALA 5720.0141
PHE 5730.0121
LEU 5740.0099
ASN 5750.0086
LEU 5760.0071
THR 5770.0070
GLN 5780.0056
ASN 5790.0048
ASP 5800.0050
PHE 5810.0063
ALA 5820.0081
CYS 5830.0091
THR 5840.0114
CYS 5850.0142
GLU 5860.0147
HIS 5870.0126
GLN 5880.0140
SER 5890.0150
PHE 5900.0123
LEU 5910.0119
GLN 5920.0145
TRP 5930.0141
ILE 5940.0122
LYS 5950.0144
ASP 5960.0163
GLN 5970.0147
ARG 5980.0145
GLN 5990.0159
LEU 6000.0138
LEU 6010.0120
VAL 6020.0122
GLU 6030.0113
VAL 6040.0112
GLU 6050.0100
ARG 6060.0082
MET 6070.0075
GLU 6080.0062
CYS 6090.0059
ALA 6100.0052
THR 6110.0070
PRO 6120.0078
SER 6130.0066
ASP 6140.0063
LYS 6150.0065
GLN 6160.0051
GLY 6170.0053
MET 6180.0070
PRO 6190.0085
VAL 6200.0092
LEU 6210.0117
SER 6220.0120
LEU 6230.0114
ASN 6240.0136
ILE 6250.0153
THR 6260.0172
CYS 6270.0176
GLU 10.0055
ALA 20.0060
ALA 30.0045
ALA 40.0031
LYS 50.0042
MET 60.0038
GLN 70.0019
ARG 80.0021
LEU 90.0027
VAL 100.0014
LEU 110.0008
LEU 120.0019
LEU 130.0013
ALA 140.0007
ILE 150.0021
SER 160.0018
LEU 170.0009
LEU 180.0015
LEU 190.0024
TYR 200.0020
GLN 210.0014
ASP 220.0019
LEU 230.0029
PRO 240.0030
VAL 250.0034
ARG 260.0081
SER 270.0076
GLU 280.0102
PHE 290.0106
GLU 300.0085
LEU 310.0089
ASP 320.0108
ARG 330.0102
ILE 340.0094
CYS 350.0110
GLY 360.0106
TYR 370.0087
GLY 380.0081
THR 390.0100
ALA 400.0113
ARG 410.0114
CYS 420.0134
ARG 430.0141
LYS 440.0161
LYS 450.0156
CYS 460.0137
ARG 470.0116
SER 480.0105
GLN 490.0094
GLU 500.0113
TYR 510.0128
ARG 520.0147
ILE 530.0152
GLY 540.0169
ARG 550.0177
CYS 560.0158
PRO 570.0166
ASN 580.0172
THR 590.0188
TYR 600.0171
ALA 610.0161
CYS 620.0144
CYS 630.0130
LEU 640.0117
ARG 650.0103
LYS 660.0114
TRP 670.0118
ASP 680.0096
GLU 690.0097
SER 700.0086
LEU 710.0099
LEU 720.0118
ASN 730.0104
ARG 740.0095
THR 750.0120
LYS 760.0124
PRO 770.0112
GLU 780.0100
ALA 790.0103
ALA 800.0103
ALA 810.0126
LYS 820.0115
LYS 830.0110
GLU 840.0116
MET 850.0108
ASN 860.0102
LEU 870.0072
SER 880.0069
VAL 890.0042
GLY 900.0050
LEU 910.0032
GLY 920.0054
GLY 930.0060
GLY 940.0076
SER 950.0056
ASN 960.0067
LEU 970.0061
SER 980.0084
VAL 990.0085
GLY 1000.0112
LEU 1010.0102
GLY 1020.0122
GLU 1030.0109
ILE 1040.0116
GLY 1050.0107
GLY 1060.0127
GLY 1070.0120
SER 1080.0097
LYS 1090.0091
LEU 1100.0082
LEU 1110.0070
ASP 1120.0079
ILE 1130.0057
ASN 1140.0073
LEU 1150.0055
GLY 1160.0060
ARG 1170.0079
GLY 1180.0059
GLY 1190.0082
GLY 1200.0087
SER 1210.0057
MET 1220.0065
VAL 1230.0036
ASP 1240.0055
LEU 1250.0042
THR 1260.0072
PHE 1270.0080
GLY 1280.0112
GLY 1290.0124
VAL 1300.0135
GLY 1310.0168
GLY 1320.0144
GLY 1330.0112
SER 1340.0084
THR 1350.0049
PHE 1360.0026
THR 1370.0019
PHE 1380.0031
PHE 1390.0067
PRO 1400.0084
LEU 1410.0098
VAL 1420.0118
ILE 1430.0113
GLY 1440.0136
GLY 1450.0128
GLY 1460.0148
SER 1470.0129
ASP 1480.0102
ALA 1490.0095
MET 1500.0075
TYR 1510.0074
LEU 1520.0052
GLY 1530.0065
PHE 1540.0053
ALA 1550.0062
ALA 1560.0064
GLY 1570.0041
GLY 1580.0059
GLY 1590.0066
SER 1600.0104
ALA 1610.0107
GLY 1620.0129
GLY 1630.0128
GLU 1640.0111
ASN 1650.0083
HIS 1660.0079
VAL 1670.0062
ALA 1680.0081
PHE 1690.0081
GLY 1700.0112
PRO 1710.0145
GLY 1720.0169
PRO 1730.0173
GLY 1740.0153
VAL 1750.0116
ASP 1760.0116
LEU 1770.0095
THR 1780.0108
PHE 1790.0100
GLY 1800.0128
GLY 1810.0150
VAL 1820.0143
GLN 1830.0142
PHE 1840.0131
ALA 1850.0152
MET 1860.0144
VAL 1870.0158
ASN 1880.0165
ASN 1890.0166
GLY 1900.0178
PRO 1910.0112
GLY 1920.0187
PRO 1930.0337
GLY 1940.0435
GLU 1950.0324
SER 1960.0289
PHE 1970.0237
THR 1980.0046
ALA 1990.0165
GLN 2000.0233
PRO 2010.0389
ALA 2020.0343
ASP 2030.0055
MET 2040.0240
GLN 2050.0163
ALA 2060.0318
GLY 2070.0541
ILE 2080.0288
LYS 2090.0417
GLY 2100.0428
PRO 2110.0167
GLY 2120.0152
PRO 2130.0263
GLY 2140.0420
GLY 2150.0355
SER 2160.0386
ILE 2170.0315
GLN 2180.0259
VAL 2190.0195
ILE 2200.0138
ASN 2210.0122
GLY 2220.0104
SER 2230.0117
THR 2240.0165
ILE 2250.0214
GLY 2260.0251
THR 2270.0283
GLY 2280.0281
SER 2290.0282
LYS 2300.0244
LYS 2310.0217
THR 2320.0193
ILE 2330.0196
LEU 2340.0178
ILE 2350.0181
TYR 2360.0173
SER 2370.0165
ILE 2380.0157
ILE 2390.0141
GLY 2400.0137
VAL 2410.0129
LYS 2420.0113
LYS 2430.0108
GLY 2440.0114
THR 2450.0120
LEU 2460.0137
ALA 2470.0133
TRP 2480.0143
ALA 2490.0139
ARG 2500.0150
THR 2510.0148
GLY 2520.0147
PHE 2530.0153
SER 2540.0153
PRO 2550.0167
ALA 2560.0164
LYS 2570.0179
LYS 2580.0206
LEU 2590.0206
ASN 2600.0235
ALA 2610.0201
GLY 2620.0190
VAL 2630.0179
VAL 2640.0163
ARG 2650.0160
VAL 2660.0151
PHE 2670.0152
PHE 2680.0147
LEU 2690.0151
ASN 2700.0150
GLN 2710.0133
LYS 2720.0133
LYS 2730.0138
ALA 2740.0123
LYS 2750.0107
ASP 2760.0124
VAL 2770.0132
LEU 2780.0108
ARG 2790.0104
LYS 2800.0129
THR 2810.0156
SER 2820.0182
ARG 2830.0197
PRO 2840.0226
MET 2850.0246
VAL 2860.0262
ASP 2870.0132
LEU 2880.0137
THR 2890.0217
PHE 2900.0330
GLY 2910.0537
GLY 2920.0743

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.