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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 22  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0990
GLU 270.0218
PRO 280.0215
CYS 290.0194
VAL 300.0201
GLU 310.0201
VAL 320.0194
VAL 330.0191
PRO 340.0199
ASN 350.0180
ILE 360.0160
THR 370.0159
TYR 380.0164
GLN 390.0163
CYS 400.0162
MET 410.0153
GLU 420.0160
LEU 430.0176
ASN 440.0168
PHE 450.0164
TYR 460.0161
LYS 470.0156
ILE 480.0145
PRO 490.0166
ASP 500.0176
ASN 510.0195
LEU 520.0178
PRO 530.0172
PHE 540.0150
SER 550.0144
THR 560.0141
LYS 570.0121
ASN 580.0123
LEU 590.0125
ASP 600.0126
LEU 610.0125
SER 620.0118
PHE 630.0124
ASN 640.0134
PRO 650.0131
LEU 660.0125
ARG 670.0113
HIS 680.0114
LEU 690.0106
GLY 700.0115
SER 710.0110
TYR 720.0114
SER 730.0118
PHE 740.0112
PHE 750.0120
SER 760.0135
PHE 770.0121
PRO 780.0105
GLU 790.0103
LEU 800.0100
GLN 810.0088
VAL 820.0089
LEU 830.0088
ASP 840.0092
LEU 850.0089
SER 860.0087
ARG 870.0091
CYS 880.0100
GLU 890.0095
ILE 900.0088
GLN 910.0086
THR 920.0091
ILE 930.0084
GLU 940.0093
ASP 950.0088
GLY 960.0085
ALA 970.0090
TYR 980.0078
GLN 990.0078
SER 1000.0086
LEU 1010.0075
SER 1020.0056
HIS 1030.0062
LEU 1040.0061
SER 1050.0058
THR 1060.0061
LEU 1070.0059
ILE 1080.0064
LEU 1090.0061
THR 1100.0063
GLY 1110.0067
ASN 1120.0070
PRO 1130.0067
ILE 1140.0064
GLN 1150.0071
SER 1160.0077
LEU 1170.0066
ALA 1180.0073
LEU 1190.0065
GLY 1200.0069
ALA 1210.0065
PHE 1220.0048
SER 1230.0054
GLY 1240.0053
LEU 1250.0043
SER 1260.0034
SER 1270.0036
LEU 1280.0036
GLN 1290.0041
LYS 1300.0044
LEU 1310.0038
VAL 1320.0045
ALA 1330.0039
VAL 1340.0045
GLU 1350.0047
THR 1360.0044
ASN 1370.0041
LEU 1380.0035
ALA 1390.0036
SER 1400.0035
LEU 1410.0032
GLU 1420.0041
ASN 1430.0044
PHE 1440.0037
PRO 1450.0039
ILE 1460.0031
GLY 1470.0038
HIS 1480.0036
LEU 1490.0029
LYS 1500.0032
THR 1510.0031
LEU 1520.0033
LYS 1530.0040
GLU 1540.0040
LEU 1550.0035
ASN 1560.0038
VAL 1570.0033
ALA 1580.0038
HIS 1590.0040
ASN 1600.0033
LEU 1610.0030
ILE 1620.0031
GLN 1630.0032
SER 1640.0035
PHE 1650.0036
LYS 1660.0040
LEU 1670.0040
PRO 1680.0043
GLU 1690.0048
TYR 1700.0042
PHE 1710.0039
SER 1720.0048
ASN 1730.0043
LEU 1740.0037
THR 1750.0044
ASN 1760.0041
LEU 1770.0039
GLU 1780.0044
HIS 1790.0042
LEU 1800.0037
ASP 1810.0038
LEU 1820.0035
SER 1830.0037
SER 1840.0036
ASN 1850.0031
LYS 1860.0030
ILE 1870.0034
GLN 1880.0034
SER 1890.0036
ILE 1900.0038
TYR 1910.0041
CYS 1920.0046
THR 1930.0048
ASP 1940.0044
LEU 1950.0044
ARG 1960.0050
VAL 1970.0048
LEU 1980.0047
HIS 1990.0054
GLN 2000.0057
MET 2010.0054
PRO 2020.0060
LEU 2030.0059
LEU 2040.0051
ASN 2050.0051
LEU 2060.0045
SER 2070.0045
LEU 2080.0042
ASP 2090.0040
LEU 2100.0038
SER 2110.0038
LEU 2120.0033
ASN 2130.0034
PRO 2140.0033
MET 2150.0035
ASN 2160.0036
PHE 2170.0035
ILE 2180.0037
GLN 2190.0040
PRO 2200.0042
GLY 2210.0045
ALA 2220.0045
PHE 2230.0045
LYS 2240.0050
GLU 2250.0054
ILE 2260.0049
ARG 2270.0051
LEU 2280.0047
HIS 2290.0047
LYS 2300.0044
LEU 2310.0041
THR 2320.0039
LEU 2330.0037
ARG 2340.0033
ASN 2350.0031
ASN 2360.0034
PHE 2370.0033
ASP 2380.0032
SER 2390.0031
LEU 2400.0030
ASN 2410.0032
VAL 2420.0034
MET 2430.0032
LYS 2440.0032
THR 2450.0035
CYS 2460.0036
ILE 2470.0036
GLN 2480.0038
GLY 2490.0040
LEU 2500.0040
ALA 2510.0042
GLY 2520.0048
LEU 2530.0046
GLU 2540.0049
VAL 2550.0046
HIS 2560.0048
ARG 2570.0043
LEU 2580.0040
VAL 2590.0036
LEU 2600.0033
GLY 2610.0029
GLU 2620.0028
PHE 2630.0028
ARG 2640.0026
ASN 2650.0027
GLU 2660.0029
GLY 2670.0029
ASN 2680.0027
LEU 2690.0027
GLU 2700.0027
LYS 2710.0025
PHE 2720.0023
ASP 2730.0023
LYS 2740.0022
SER 2750.0026
ALA 2760.0027
LEU 2770.0029
GLU 2780.0030
GLY 2790.0035
LEU 2800.0035
CYS 2810.0036
ASN 2820.0042
LEU 2830.0042
THR 2840.0045
ILE 2850.0042
GLU 2860.0045
GLU 2870.0040
PHE 2880.0036
ARG 2890.0033
LEU 2900.0029
ALA 2910.0029
TYR 2920.0025
LEU 2930.0023
ASP 2940.0021
TYR 2950.0020
TYR 2960.0017
LEU 2970.0015
ASP 2980.0014
GLY 2990.0014
ILE 3000.0015
ILE 3010.0015
ASP 3020.0020
LEU 3030.0021
PHE 3040.0024
ASN 3050.0024
CYS 3060.0029
LEU 3070.0030
THR 3080.0027
ASN 3090.0031
VAL 3100.0034
SER 3110.0035
SER 3120.0035
PHE 3130.0030
SER 3140.0030
LEU 3150.0026
VAL 3160.0027
SER 3170.0024
VAL 3180.0020
THR 3190.0015
ILE 3200.0013
GLU 3210.0011
ARG 3220.0010
VAL 3230.0010
LYS 3240.0011
ASP 3250.0010
PHE 3260.0011
SER 3270.0009
TYR 3280.0010
ASN 3290.0013
PHE 3300.0019
GLY 3310.0025
TRP 3320.0027
GLN 3330.0031
HIS 3340.0032
LEU 3350.0027
GLU 3360.0029
LEU 3370.0024
VAL 3380.0028
ASN 3390.0027
CYS 3400.0021
LYS 3410.0018
PHE 3420.0015
GLY 3430.0014
GLN 3440.0018
PHE 3450.0020
PRO 3460.0016
THR 3470.0015
LEU 3480.0015
LYS 3490.0013
LEU 3500.0016
LYS 3510.0017
SER 3520.0022
LEU 3530.0023
LYS 3540.0030
ARG 3550.0032
LEU 3560.0029
THR 3570.0030
PHE 3580.0027
THR 3590.0032
SER 3600.0032
ASN 3610.0026
LYS 3620.0026
GLY 3630.0022
GLY 3640.0023
ASN 3650.0027
ALA 3660.0030
PHE 3670.0031
SER 3680.0027
GLU 3690.0027
VAL 3700.0023
ASP 3710.0021
LEU 3720.0021
PRO 3730.0022
SER 3740.0025
LEU 3750.0029
GLU 3760.0036
PHE 3770.0035
LEU 3780.0033
ASP 3790.0035
LEU 3800.0033
SER 3810.0038
ARG 3820.0036
ASN 3830.0033
GLY 3840.0035
LEU 3850.0034
SER 3860.0036
PHE 3870.0040
LYS 3880.0041
GLY 3890.0044
CYS 3900.0044
CYS 3910.0046
SER 3920.0043
GLN 3930.0040
SER 3940.0036
ASP 3950.0035
PHE 3960.0033
GLY 3970.0031
THR 3980.0034
ILE 3990.0038
SER 4000.0039
LEU 4010.0041
LYS 4020.0044
TYR 4030.0043
LEU 4040.0042
ASP 4050.0041
LEU 4060.0040
SER 4070.0042
PHE 4080.0041
ASN 4090.0040
GLY 4100.0040
VAL 4110.0042
ILE 4120.0043
THR 4130.0045
MET 4140.0047
SER 4150.0048
SER 4160.0049
ASN 4170.0052
PHE 4180.0050
LEU 4190.0052
GLY 4200.0051
LEU 4210.0050
GLU 4220.0056
GLN 4230.0054
LEU 4240.0051
GLU 4250.0053
HIS 4260.0049
LEU 4270.0049
ASP 4280.0047
PHE 4290.0045
GLN 4300.0044
HIS 4310.0042
SER 4320.0042
ASN 4330.0042
LEU 4340.0044
LYS 4350.0045
GLN 4360.0047
MET 4370.0046
SER 4380.0047
GLU 4390.0050
PHE 4400.0052
SER 4410.0053
VAL 4420.0052
PHE 4430.0054
LEU 4440.0058
SER 4450.0059
LEU 4460.0057
ARG 4470.0062
ASN 4480.0061
LEU 4490.0057
ILE 4500.0056
TYR 4510.0051
LEU 4520.0050
ASP 4530.0047
ILE 4540.0044
SER 4550.0041
HIS 4560.0038
THR 4570.0042
HIS 4580.0039
THR 4590.0040
ARG 4600.0037
VAL 4610.0039
ALA 4620.0042
PHE 4630.0047
ASN 4640.0047
GLY 4650.0053
ILE 4660.0050
PHE 4670.0052
ASN 4680.0059
GLY 4690.0063
LEU 4700.0060
SER 4710.0064
SER 4720.0065
LEU 4730.0059
GLU 4740.0057
VAL 4750.0052
LEU 4760.0047
LYS 4770.0043
MET 4780.0038
ALA 4790.0034
GLY 4800.0029
ASN 4810.0031
SER 4820.0027
PHE 4830.0029
GLN 4840.0034
GLU 4850.0032
ASN 4860.0025
PHE 4870.0028
LEU 4880.0027
PRO 4890.0036
ASP 4900.0041
ILE 4910.0047
PHE 4920.0047
THR 4930.0053
GLU 4940.0060
LEU 4950.0056
ARG 4960.0059
ASN 4970.0062
LEU 4980.0054
THR 4990.0054
PHE 5000.0049
LEU 5010.0042
ASP 5020.0038
LEU 5030.0029
SER 5040.0027
GLN 5050.0022
CYS 5060.0021
GLN 5070.0018
LEU 5080.0019
GLU 5090.0023
GLN 5100.0025
LEU 5110.0022
SER 5120.0031
PRO 5130.0027
THR 5140.0034
ALA 5150.0033
PHE 5160.0033
ASN 5170.0037
SER 5180.0048
LEU 5190.0046
SER 5200.0050
SER 5210.0057
LEU 5220.0049
GLN 5230.0053
VAL 5240.0049
LEU 5250.0038
ASN 5260.0036
MET 5270.0026
SER 5280.0032
HIS 5290.0029
ASN 5300.0021
ASN 5310.0025
PHE 5320.0029
PHE 5330.0042
SER 5340.0041
LEU 5350.0035
ASP 5360.0027
THR 5370.0023
PHE 5380.0019
PRO 5390.0020
TYR 5400.0022
LYS 5410.0022
CYS 5420.0031
LEU 5430.0036
ASN 5440.0044
SER 5450.0053
LEU 5460.0046
GLN 5470.0056
VAL 5480.0053
LEU 5490.0041
ASP 5500.0043
TYR 5510.0037
SER 5520.0048
LEU 5530.0047
ASN 5540.0038
HIS 5550.0045
ILE 5560.0047
MET 5570.0063
THR 5580.0061
SER 5590.0052
LYS 5600.0055
LYS 5610.0045
GLN 5620.0050
GLU 5630.0036
LEU 5640.0039
GLN 5650.0037
HIS 5660.0024
PHE 5670.0031
PRO 5680.0035
SER 5690.0045
SER 5700.0053
LEU 5710.0051
ALA 5720.0066
PHE 5730.0065
LEU 5740.0055
ASN 5750.0058
LEU 5760.0057
THR 5770.0068
GLN 5780.0067
ASN 5790.0060
ASP 5800.0067
PHE 5810.0074
ALA 5820.0085
CYS 5830.0100
THR 5840.0107
CYS 5850.0114
GLU 5860.0103
HIS 5870.0088
GLN 5880.0095
SER 5890.0081
PHE 5900.0070
LEU 5910.0085
GLN 5920.0088
TRP 5930.0072
ILE 5940.0076
LYS 5950.0091
ASP 5960.0083
GLN 5970.0073
ARG 5980.0086
GLN 5990.0086
LEU 6000.0072
LEU 6010.0075
VAL 6020.0081
GLU 6030.0090
VAL 6040.0096
GLU 6050.0104
ARG 6060.0090
MET 6070.0084
GLU 6080.0091
CYS 6090.0094
ALA 6100.0088
THR 6110.0093
PRO 6120.0109
SER 6130.0113
ASP 6140.0128
LYS 6150.0120
GLN 6160.0106
GLY 6170.0107
MET 6180.0115
PRO 6190.0107
VAL 6200.0098
LEU 6210.0104
SER 6220.0123
LEU 6230.0120
ASN 6240.0131
ILE 6250.0122
THR 6260.0137
CYS 6270.0140
GLU 10.0014
ALA 20.0022
ALA 30.0024
ALA 40.0014
LYS 50.0013
MET 60.0019
GLN 70.0015
ARG 80.0010
LEU 90.0015
VAL 100.0014
LEU 110.0010
LEU 120.0015
LEU 130.0015
ALA 140.0010
ILE 150.0015
SER 160.0020
LEU 170.0015
LEU 180.0011
LEU 190.0021
TYR 200.0023
GLN 210.0016
ASP 220.0017
LEU 230.0027
PRO 240.0028
VAL 250.0032
ARG 260.0052
SER 270.0048
GLU 280.0059
PHE 290.0059
GLU 300.0049
LEU 310.0050
ASP 320.0056
ARG 330.0051
ILE 340.0048
CYS 350.0052
GLY 360.0048
TYR 370.0037
GLY 380.0039
THR 390.0052
ALA 400.0059
ARG 410.0056
CYS 420.0064
ARG 430.0065
LYS 440.0072
LYS 450.0068
CYS 460.0058
ARG 470.0051
SER 480.0047
GLN 490.0047
GLU 500.0053
TYR 510.0055
ARG 520.0062
ILE 530.0065
GLY 540.0073
ARG 550.0078
CYS 560.0072
PRO 570.0078
ASN 580.0080
THR 590.0085
TYR 600.0077
ALA 610.0070
CYS 620.0064
CYS 630.0060
LEU 640.0055
ARG 650.0052
LYS 660.0070
TRP 670.0080
ASP 680.0070
GLU 690.0076
SER 700.0071
LEU 710.0079
LEU 720.0090
ASN 730.0080
ARG 740.0075
THR 750.0090
LYS 760.0090
PRO 770.0073
GLU 780.0065
ALA 790.0057
ALA 800.0059
ALA 810.0084
LYS 820.0091
LYS 830.0087
GLU 840.0086
MET 850.0087
ASN 860.0108
LEU 870.0109
SER 880.0128
VAL 890.0137
GLY 900.0160
LEU 910.0179
GLY 920.0205
GLY 930.0224
GLY 940.0210
SER 950.0189
ASN 960.0162
LEU 970.0142
SER 980.0124
VAL 990.0106
GLY 1000.0096
LEU 1010.0094
GLY 1020.0094
GLU 1030.0095
ILE 1040.0097
GLY 1050.0100
GLY 1060.0117
GLY 1070.0103
SER 1080.0093
LYS 1090.0086
LEU 1100.0080
LEU 1110.0092
ASP 1120.0109
ILE 1130.0125
ASN 1140.0145
LEU 1150.0163
GLY 1160.0188
ARG 1170.0210
GLY 1180.0219
GLY 1190.0218
GLY 1200.0209
SER 1210.0190
MET 1220.0179
VAL 1230.0156
ASP 1240.0150
LEU 1250.0129
THR 1260.0128
PHE 1270.0116
GLY 1280.0127
GLY 1290.0133
VAL 1300.0129
GLY 1310.0157
GLY 1320.0141
GLY 1330.0133
SER 1340.0109
THR 1350.0101
PHE 1360.0087
THR 1370.0081
PHE 1380.0092
PHE 1390.0093
PRO 1400.0111
LEU 1410.0116
VAL 1420.0128
ILE 1430.0137
GLY 1440.0150
GLY 1450.0162
GLY 1460.0189
SER 1470.0180
ASP 1480.0171
ALA 1490.0152
MET 1500.0134
TYR 1510.0113
LEU 1520.0099
GLY 1530.0086
PHE 1540.0077
ALA 1550.0070
ALA 1560.0079
GLY 1570.0086
GLY 1580.0106
GLY 1590.0119
SER 1600.0142
ALA 1610.0142
GLY 1620.0153
GLY 1630.0154
GLU 1640.0146
ASN 1650.0135
HIS 1660.0142
VAL 1670.0139
ALA 1680.0158
PHE 1690.0164
GLY 1700.0186
PRO 1710.0207
GLY 1720.0201
PRO 1730.0188
GLY 1740.0172
VAL 1750.0161
ASP 1760.0160
LEU 1770.0142
THR 1780.0149
PHE 1790.0138
GLY 1800.0153
GLY 1810.0164
VAL 1820.0153
GLN 1830.0155
PHE 1840.0142
ALA 1850.0152
MET 1860.0149
VAL 1870.0138
ASN 1880.0157
ASN 1890.0161
GLY 1900.0179
PRO 1910.0264
GLY 1920.0302
PRO 1930.0362
GLY 1940.0387
GLU 1950.0336
SER 1960.0238
PHE 1970.0205
THR 1980.0410
ALA 1990.0558
GLN 2000.0703
PRO 2010.0990
ALA 2020.0854
ASP 2030.0311
MET 2040.0594
GLN 2050.0484
ALA 2060.0550
GLY 2070.0785
ILE 2080.0408
LYS 2090.0541
GLY 2100.0618
PRO 2110.0399
GLY 2120.0425
PRO 2130.0562
GLY 2140.0713
GLY 2150.0602
SER 2160.0551
ILE 2170.0402
GLN 2180.0348
VAL 2190.0233
ILE 2200.0228
ASN 2210.0197
GLY 2220.0160
SER 2230.0138
THR 2240.0170
ILE 2250.0164
GLY 2260.0177
THR 2270.0161
GLY 2280.0146
SER 2290.0115
LYS 2300.0100
LYS 2310.0081
THR 2320.0067
ILE 2330.0056
LEU 2340.0049
ILE 2350.0043
TYR 2360.0035
SER 2370.0036
ILE 2380.0035
ILE 2390.0044
GLY 2400.0042
VAL 2410.0042
LYS 2420.0043
LYS 2430.0044
GLY 2440.0044
THR 2450.0044
LEU 2460.0049
ALA 2470.0055
TRP 2480.0054
ALA 2490.0058
ARG 2500.0057
THR 2510.0058
GLY 2520.0076
PHE 2530.0072
SER 2540.0092
PRO 2550.0089
ALA 2560.0090
LYS 2570.0096
LYS 2580.0100
LEU 2590.0099
ASN 2600.0105
ALA 2610.0088
GLY 2620.0079
VAL 2630.0070
VAL 2640.0064
ARG 2650.0058
VAL 2660.0057
PHE 2670.0048
PHE 2680.0046
LEU 2690.0041
ASN 2700.0043
GLN 2710.0037
LYS 2720.0051
LYS 2730.0053
ALA 2740.0043
LYS 2750.0048
ASP 2760.0071
VAL 2770.0074
LEU 2780.0065
ARG 2790.0075
LYS 2800.0091
THR 2810.0104
SER 2820.0105
ARG 2830.0102
PRO 2840.0102
MET 2850.0099
VAL 2860.0087
ASP 2870.0083
LEU 2880.0056
THR 2890.0087
PHE 2900.0088
GLY 2910.0130
GLY 2920.0158

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.