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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 23  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0658
GLU 270.0138
PRO 280.0132
CYS 290.0129
VAL 300.0149
GLU 310.0161
VAL 320.0164
VAL 330.0172
PRO 340.0179
ASN 350.0167
ILE 360.0152
THR 370.0137
TYR 380.0127
GLN 390.0119
CYS 400.0103
MET 410.0102
GLU 420.0102
LEU 430.0099
ASN 440.0081
PHE 450.0066
TYR 460.0049
LYS 470.0051
ILE 480.0064
PRO 490.0087
ASP 500.0104
ASN 510.0124
LEU 520.0129
PRO 530.0147
PHE 540.0144
SER 550.0151
THR 560.0131
LYS 570.0121
ASN 580.0108
LEU 590.0094
ASP 600.0087
LEU 610.0072
SER 620.0073
PHE 630.0079
ASN 640.0067
PRO 650.0058
LEU 660.0043
ARG 670.0049
HIS 680.0049
LEU 690.0051
GLY 700.0067
SER 710.0085
TYR 720.0091
SER 730.0071
PHE 740.0081
PHE 750.0103
SER 760.0109
PHE 770.0110
PRO 780.0123
GLU 790.0126
LEU 800.0102
GLN 810.0095
VAL 820.0078
LEU 830.0064
ASP 840.0060
LEU 850.0049
SER 860.0058
ARG 870.0065
CYS 880.0053
GLU 890.0060
ILE 900.0050
GLN 910.0065
THR 920.0066
ILE 930.0062
GLU 940.0078
ASP 950.0094
GLY 960.0093
ALA 970.0072
TYR 980.0074
GLN 990.0096
SER 1000.0105
LEU 1010.0094
SER 1020.0105
HIS 1030.0103
LEU 1040.0080
SER 1050.0073
THR 1060.0058
LEU 1070.0046
ILE 1080.0043
LEU 1090.0041
THR 1100.0053
GLY 1110.0065
ASN 1120.0059
PRO 1130.0074
ILE 1140.0070
GLN 1150.0088
SER 1160.0088
LEU 1170.0080
ALA 1180.0093
LEU 1190.0102
GLY 1200.0097
ALA 1210.0076
PHE 1220.0072
SER 1230.0090
GLY 1240.0096
LEU 1250.0082
SER 1260.0097
SER 1270.0082
LEU 1280.0063
GLN 1290.0057
LYS 1300.0043
LEU 1310.0037
VAL 1320.0037
ALA 1330.0044
VAL 1340.0053
GLU 1350.0067
THR 1360.0063
ASN 1370.0081
LEU 1380.0078
ALA 1390.0095
SER 1400.0092
LEU 1410.0081
GLU 1420.0098
ASN 1430.0096
PHE 1440.0079
PRO 1450.0082
ILE 1460.0073
GLY 1470.0087
HIS 1480.0091
LEU 1490.0076
LYS 1500.0084
THR 1510.0076
LEU 1520.0055
LYS 1530.0048
GLU 1540.0037
LEU 1550.0038
ASN 1560.0039
VAL 1570.0051
ALA 1580.0058
HIS 1590.0072
ASN 1600.0077
LEU 1610.0092
ILE 1620.0085
GLN 1630.0098
SER 1640.0094
PHE 1650.0080
LYS 1660.0090
LEU 1670.0082
PRO 1680.0094
GLU 1690.0103
TYR 1700.0094
PHE 1710.0081
SER 1720.0092
ASN 1730.0092
LEU 1740.0075
THR 1750.0080
ASN 1760.0069
LEU 1770.0052
GLU 1780.0043
HIS 1790.0034
LEU 1800.0040
ASP 1810.0042
LEU 1820.0055
SER 1830.0059
SER 1840.0073
ASN 1850.0079
LYS 1860.0093
ILE 1870.0083
GLN 1880.0092
SER 1890.0088
ILE 1900.0080
TYR 1910.0090
CYS 1920.0090
THR 1930.0101
ASP 1940.0089
LEU 1950.0079
ARG 1960.0093
VAL 1970.0088
LEU 1980.0075
HIS 1990.0085
GLN 2000.0095
MET 2010.0085
PRO 2020.0079
LEU 2030.0078
LEU 2040.0065
ASN 2050.0052
LEU 2060.0041
SER 2070.0031
LEU 2080.0037
ASP 2090.0039
LEU 2100.0052
SER 2110.0056
LEU 2120.0067
ASN 2130.0072
PRO 2140.0083
MET 2150.0075
ASN 2160.0084
PHE 2170.0079
ILE 2180.0070
GLN 2190.0078
PRO 2200.0071
GLY 2210.0072
ALA 2220.0071
PHE 2230.0059
LYS 2240.0063
GLU 2250.0065
ILE 2260.0059
ARG 2270.0047
LEU 2280.0038
HIS 2290.0031
LYS 2300.0024
LEU 2310.0029
THR 2320.0033
LEU 2330.0041
ARG 2340.0046
ASN 2350.0058
ASN 2360.0060
PHE 2370.0062
ASP 2380.0073
SER 2390.0065
LEU 2400.0052
ASN 2410.0054
VAL 2420.0062
MET 2430.0050
LYS 2440.0044
THR 2450.0054
CYS 2460.0052
ILE 2470.0040
GLN 2480.0045
GLY 2490.0054
LEU 2500.0044
ALA 2510.0044
GLY 2520.0048
LEU 2530.0042
GLU 2540.0038
VAL 2550.0027
HIS 2560.0025
ARG 2570.0020
LEU 2580.0020
VAL 2590.0025
LEU 2600.0031
GLY 2610.0041
GLU 2620.0051
PHE 2630.0062
ARG 2640.0071
ASN 2650.0081
GLU 2660.0076
GLY 2670.0077
ASN 2680.0067
LEU 2690.0059
GLU 2700.0063
LYS 2710.0052
PHE 2720.0042
ASP 2730.0036
LYS 2740.0029
SER 2750.0023
ALA 2760.0027
LEU 2770.0024
GLU 2780.0020
GLY 2790.0024
LEU 2800.0021
CYS 2810.0024
ASN 2820.0031
LEU 2830.0030
THR 2840.0030
ILE 2850.0022
GLU 2860.0027
GLU 2870.0025
PHE 2880.0024
ARG 2890.0028
LEU 2900.0033
ALA 2910.0039
TYR 2920.0047
LEU 2930.0047
ASP 2940.0058
TYR 2950.0052
TYR 2960.0056
LEU 2970.0049
ASP 2980.0054
GLY 2990.0051
ILE 3000.0044
ILE 3010.0046
ASP 3020.0039
LEU 3030.0035
PHE 3040.0034
ASN 3050.0036
CYS 3060.0030
LEU 3070.0032
THR 3080.0040
ASN 3090.0040
VAL 3100.0035
SER 3110.0037
SER 3120.0037
PHE 3130.0037
SER 3140.0038
LEU 3150.0041
VAL 3160.0043
SER 3170.0049
VAL 3180.0047
THR 3190.0054
ILE 3200.0053
GLU 3210.0061
ARG 3220.0062
VAL 3230.0060
LYS 3240.0065
ASP 3250.0058
PHE 3260.0056
SER 3270.0064
TYR 3280.0061
ASN 3290.0060
PHE 3300.0053
GLY 3310.0051
TRP 3320.0047
GLN 3330.0047
HIS 3340.0045
LEU 3350.0046
GLU 3360.0045
LEU 3370.0047
VAL 3380.0047
ASN 3390.0051
CYS 3400.0051
LYS 3410.0055
PHE 3420.0056
GLY 3430.0061
GLN 3440.0064
PHE 3450.0062
PRO 3460.0059
THR 3470.0064
LEU 3480.0060
LYS 3490.0063
LEU 3500.0059
LYS 3510.0061
SER 3520.0058
LEU 3530.0055
LYS 3540.0053
ARG 3550.0051
LEU 3560.0052
THR 3570.0050
PHE 3580.0052
THR 3590.0050
SER 3600.0051
ASN 3610.0054
LYS 3620.0052
GLY 3630.0051
GLY 3640.0055
ASN 3650.0057
ALA 3660.0062
PHE 3670.0057
SER 3680.0061
GLU 3690.0060
VAL 3700.0058
ASP 3710.0060
LEU 3720.0058
PRO 3730.0058
SER 3740.0057
LEU 3750.0055
GLU 3760.0054
PHE 3770.0058
LEU 3780.0055
ASP 3790.0053
LEU 3800.0053
SER 3810.0050
ARG 3820.0054
ASN 3830.0055
GLY 3840.0050
LEU 3850.0049
SER 3860.0045
PHE 3870.0044
LYS 3880.0046
GLY 3890.0044
CYS 3900.0042
CYS 3910.0043
SER 3920.0043
GLN 3930.0046
SER 3940.0048
ASP 3950.0048
PHE 3960.0051
GLY 3970.0052
THR 3980.0052
ILE 3990.0052
SER 4000.0057
LEU 4010.0056
LYS 4020.0068
TYR 4030.0063
LEU 4040.0054
ASP 4050.0052
LEU 4060.0047
SER 4070.0050
PHE 4080.0050
ASN 4090.0048
GLY 4100.0046
VAL 4110.0041
ILE 4120.0040
THR 4130.0042
MET 4140.0043
SER 4150.0044
SER 4160.0045
ASN 4170.0051
PHE 4180.0048
LEU 4190.0050
GLY 4200.0055
LEU 4210.0058
GLU 4220.0071
GLN 4230.0079
LEU 4240.0072
GLU 4250.0083
HIS 4260.0073
LEU 4270.0062
ASP 4280.0055
PHE 4290.0045
GLN 4300.0044
HIS 4310.0046
SER 4320.0042
ASN 4330.0042
LEU 4340.0042
LYS 4350.0047
GLN 4360.0054
MET 4370.0056
SER 4380.0073
GLU 4390.0074
PHE 4400.0074
SER 4410.0075
VAL 4420.0060
PHE 4430.0066
LEU 4440.0078
SER 4450.0079
LEU 4460.0081
ARG 4470.0103
ASN 4480.0105
LEU 4490.0091
ILE 4500.0101
TYR 4510.0085
LEU 4520.0069
ASP 4530.0056
ILE 4540.0044
SER 4550.0041
HIS 4560.0044
THR 4570.0041
HIS 4580.0051
THR 4590.0051
ARG 4600.0068
VAL 4610.0074
ALA 4620.0097
PHE 4630.0100
ASN 4640.0110
GLY 4650.0106
ILE 4660.0083
PHE 4670.0089
ASN 4680.0108
GLY 4690.0112
LEU 4700.0107
SER 4710.0131
SER 4720.0134
LEU 4730.0112
GLU 4740.0117
VAL 4750.0095
LEU 4760.0075
LYS 4770.0057
MET 4780.0046
ALA 4790.0042
GLY 4800.0050
ASN 4810.0052
SER 4820.0076
PHE 4830.0089
GLN 4840.0114
GLU 4850.0137
ASN 4860.0118
PHE 4870.0124
LEU 4880.0107
PRO 4890.0129
ASP 4900.0140
ILE 4910.0123
PHE 4920.0121
THR 4930.0152
GLU 4940.0151
LEU 4950.0133
ARG 4960.0159
ASN 4970.0156
LEU 4980.0127
THR 4990.0127
PHE 5000.0099
LEU 5010.0078
ASP 5020.0056
LEU 5030.0048
SER 5040.0045
GLN 5050.0061
CYS 5060.0062
GLN 5070.0095
LEU 5080.0096
GLU 5090.0124
GLN 5100.0133
LEU 5110.0127
SER 5120.0156
PRO 5130.0168
THR 5140.0174
ALA 5150.0142
PHE 5160.0136
ASN 5170.0171
SER 5180.0179
LEU 5190.0154
SER 5200.0178
SER 5210.0170
LEU 5220.0138
GLN 5230.0133
VAL 5240.0101
LEU 5250.0076
ASN 5260.0053
MET 5270.0048
SER 5280.0056
HIS 5290.0082
ASN 5300.0086
ASN 5310.0118
PHE 5320.0122
PHE 5330.0152
SER 5340.0143
LEU 5350.0114
ASP 5360.0136
THR 5370.0132
PHE 5380.0169
PRO 5390.0154
TYR 5400.0138
LYS 5410.0173
CYS 5420.0187
LEU 5430.0160
ASN 5440.0187
SER 5450.0173
LEU 5460.0134
GLN 5470.0130
VAL 5480.0096
LEU 5490.0067
ASP 5500.0051
TYR 5510.0054
SER 5520.0080
LEU 5530.0111
ASN 5540.0108
HIS 5550.0141
ILE 5560.0126
MET 5570.0164
THR 5580.0165
SER 5590.0156
LYS 5600.0198
LYS 5610.0197
GLN 5620.0192
GLU 5630.0186
LEU 5640.0141
GLN 5650.0153
HIS 5660.0165
PHE 5670.0131
PRO 5680.0156
SER 5690.0166
SER 5700.0165
LEU 5710.0122
ALA 5720.0121
PHE 5730.0092
LEU 5740.0058
ASN 5750.0064
LEU 5760.0070
THR 5770.0109
GLN 5780.0142
ASN 5790.0132
ASP 5800.0173
PHE 5810.0165
ALA 5820.0205
CYS 5830.0208
THR 5840.0241
CYS 5850.0242
GLU 5860.0252
HIS 5870.0204
GLN 5880.0182
SER 5890.0167
PHE 5900.0137
LEU 5910.0130
GLN 5920.0113
TRP 5930.0096
ILE 5940.0072
LYS 5950.0065
ASP 5960.0063
GLN 5970.0057
ARG 5980.0056
GLN 5990.0086
LEU 6000.0077
LEU 6010.0067
VAL 6020.0106
GLU 6030.0130
VAL 6040.0123
GLU 6050.0168
ARG 6060.0163
MET 6070.0135
GLU 6080.0177
CYS 6090.0197
ALA 6100.0224
THR 6110.0252
PRO 6120.0277
SER 6130.0308
ASP 6140.0310
LYS 6150.0262
GLN 6160.0259
GLY 6170.0245
MET 6180.0222
PRO 6190.0175
VAL 6200.0144
LEU 6210.0119
SER 6220.0159
LEU 6230.0174
ASN 6240.0186
ILE 6250.0174
THR 6260.0208
CYS 6270.0264
GLU 10.0112
ALA 20.0097
ALA 30.0060
ALA 40.0060
LYS 50.0066
MET 60.0049
GLN 70.0013
ARG 80.0022
LEU 90.0042
VAL 100.0041
LEU 110.0024
LEU 120.0028
LEU 130.0055
ALA 140.0057
ILE 150.0047
SER 160.0055
LEU 170.0068
LEU 180.0065
LEU 190.0055
TYR 200.0065
GLN 210.0072
ASP 220.0063
LEU 230.0057
PRO 240.0062
VAL 250.0071
ARG 260.0044
SER 270.0043
GLU 280.0043
PHE 290.0040
GLU 300.0040
LEU 310.0044
ASP 320.0046
ARG 330.0038
ILE 340.0042
CYS 350.0050
GLY 360.0052
TYR 370.0057
GLY 380.0047
THR 390.0043
ALA 400.0040
ARG 410.0041
CYS 420.0050
ARG 430.0051
LYS 440.0062
LYS 450.0060
CYS 460.0057
ARG 470.0049
SER 480.0049
GLN 490.0044
GLU 500.0050
TYR 510.0059
ARG 520.0066
ILE 530.0070
GLY 540.0075
ARG 550.0076
CYS 560.0071
PRO 570.0078
ASN 580.0075
THR 590.0083
TYR 600.0070
ALA 610.0065
CYS 620.0059
CYS 630.0051
LEU 640.0048
ARG 650.0042
LYS 660.0062
TRP 670.0067
ASP 680.0056
GLU 690.0062
SER 700.0058
LEU 710.0071
LEU 720.0081
ASN 730.0072
ARG 740.0081
THR 750.0098
LYS 760.0101
PRO 770.0112
GLU 780.0102
ALA 790.0113
ALA 800.0131
ALA 810.0126
LYS 820.0120
LYS 830.0103
GLU 840.0098
MET 850.0085
ASN 860.0099
LEU 870.0098
SER 880.0121
VAL 890.0134
GLY 900.0154
LEU 910.0179
GLY 920.0201
GLY 930.0225
GLY 940.0210
SER 950.0199
ASN 960.0170
LEU 970.0154
SER 980.0134
VAL 990.0112
GLY 1000.0102
LEU 1010.0084
GLY 1020.0103
GLU 1030.0110
ILE 1040.0113
GLY 1050.0129
GLY 1060.0101
GLY 1070.0068
SER 1080.0061
LYS 1090.0046
LEU 1100.0059
LEU 1110.0083
ASP 1120.0113
ILE 1130.0129
ASN 1140.0158
LEU 1150.0174
GLY 1160.0199
ARG 1170.0226
GLY 1180.0233
GLY 1190.0233
GLY 1200.0218
SER 1210.0188
MET 1220.0163
VAL 1230.0146
ASP 1240.0123
LEU 1250.0106
THR 1260.0094
PHE 1270.0082
GLY 1280.0084
GLY 1290.0075
VAL 1300.0076
GLY 1310.0084
GLY 1320.0072
GLY 1330.0065
SER 1340.0058
THR 1350.0063
PHE 1360.0069
THR 1370.0081
PHE 1380.0092
PHE 1390.0109
PRO 1400.0121
LEU 1410.0124
VAL 1420.0134
ILE 1430.0147
GLY 1440.0164
GLY 1450.0173
GLY 1460.0213
SER 1470.0199
ASP 1480.0184
ALA 1490.0164
MET 1500.0142
TYR 1510.0128
LEU 1520.0109
GLY 1530.0101
PHE 1540.0084
ALA 1550.0080
ALA 1560.0069
GLY 1570.0073
GLY 1580.0074
GLY 1590.0078
SER 1600.0079
ALA 1610.0067
GLY 1620.0062
GLY 1630.0059
GLU 1640.0065
ASN 1650.0071
HIS 1660.0087
VAL 1670.0102
ALA 1680.0119
PHE 1690.0141
GLY 1700.0154
PRO 1710.0167
GLY 1720.0163
PRO 1730.0166
GLY 1740.0147
VAL 1750.0133
ASP 1760.0118
LEU 1770.0101
THR 1780.0084
PHE 1790.0072
GLY 1800.0062
GLY 1810.0067
VAL 1820.0082
GLN 1830.0098
PHE 1840.0114
ALA 1850.0134
MET 1860.0152
VAL 1870.0150
ASN 1880.0142
ASN 1890.0140
GLY 1900.0132
PRO 1910.0081
GLY 1920.0243
PRO 1930.0393
GLY 1940.0431
GLU 1950.0284
SER 1960.0230
PHE 1970.0194
THR 1980.0196
ALA 1990.0199
GLN 2000.0251
PRO 2010.0271
ALA 2020.0271
ASP 2030.0179
MET 2040.0144
GLN 2050.0127
ALA 2060.0317
GLY 2070.0589
ILE 2080.0331
LYS 2090.0477
GLY 2100.0476
PRO 2110.0166
GLY 2120.0146
PRO 2130.0388
GLY 2140.0552
GLY 2150.0393
SER 2160.0403
ILE 2170.0301
GLN 2180.0236
VAL 2190.0134
ILE 2200.0077
ASN 2210.0107
GLY 2220.0064
SER 2230.0085
THR 2240.0080
ILE 2250.0119
GLY 2260.0201
THR 2270.0249
GLY 2280.0273
SER 2290.0290
LYS 2300.0227
LYS 2310.0147
THR 2320.0115
ILE 2330.0108
LEU 2340.0078
ILE 2350.0078
TYR 2360.0073
SER 2370.0069
ILE 2380.0067
ILE 2390.0058
GLY 2400.0060
VAL 2410.0064
LYS 2420.0054
LYS 2430.0054
GLY 2440.0051
THR 2450.0049
LEU 2460.0054
ALA 2470.0048
TRP 2480.0057
ALA 2490.0053
ARG 2500.0064
THR 2510.0054
GLY 2520.0072
PHE 2530.0091
SER 2540.0104
PRO 2550.0143
ALA 2560.0161
LYS 2570.0196
LYS 2580.0252
LEU 2590.0269
ASN 2600.0329
ALA 2610.0312
GLY 2620.0257
VAL 2630.0228
VAL 2640.0159
ARG 2650.0141
VAL 2660.0112
PHE 2670.0116
PHE 2680.0112
LEU 2690.0119
ASN 2700.0118
GLN 2710.0087
LYS 2720.0099
LYS 2730.0124
ALA 2740.0117
LYS 2750.0109
ASP 2760.0154
VAL 2770.0184
LEU 2780.0164
ARG 2790.0169
LYS 2800.0214
THR 2810.0278
SER 2820.0307
ARG 2830.0280
PRO 2840.0307
MET 2850.0297
VAL 2860.0296
ASP 2870.0200
LEU 2880.0269
THR 2890.0257
PHE 2900.0297
GLY 2910.0439
GLY 2920.0658

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.