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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 24  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0709
GLU 270.0147
PRO 280.0150
CYS 290.0137
VAL 300.0145
GLU 310.0143
VAL 320.0142
VAL 330.0136
PRO 340.0136
ASN 350.0118
ILE 360.0108
THR 370.0113
TYR 380.0116
GLN 390.0120
CYS 400.0115
MET 410.0116
GLU 420.0121
LEU 430.0126
ASN 440.0118
PHE 450.0109
TYR 460.0101
LYS 470.0094
ILE 480.0088
PRO 490.0105
ASP 500.0108
ASN 510.0124
LEU 520.0113
PRO 530.0107
PHE 540.0089
SER 550.0087
THR 560.0091
LYS 570.0081
ASN 580.0088
LEU 590.0088
ASP 600.0094
LEU 610.0089
SER 620.0091
PHE 630.0097
ASN 640.0095
PRO 650.0089
LEU 660.0078
ARG 670.0068
HIS 680.0060
LEU 690.0055
GLY 700.0055
SER 710.0050
TYR 720.0054
SER 730.0061
PHE 740.0060
PHE 750.0062
SER 760.0076
PHE 770.0068
PRO 780.0054
GLU 790.0059
LEU 800.0061
GLN 810.0061
VAL 820.0068
LEU 830.0065
ASP 840.0073
LEU 850.0067
SER 860.0074
ARG 870.0076
CYS 880.0073
GLU 890.0068
ILE 900.0057
GLN 910.0049
THR 920.0041
ILE 930.0036
GLU 940.0035
ASP 950.0029
GLY 960.0030
ALA 970.0037
TYR 980.0034
GLN 990.0028
SER 1000.0037
LEU 1010.0035
SER 1020.0022
HIS 1030.0035
LEU 1040.0040
SER 1050.0048
THR 1060.0055
LEU 1070.0051
ILE 1080.0060
LEU 1090.0055
THR 1100.0065
GLY 1110.0067
ASN 1120.0057
PRO 1130.0050
ILE 1140.0037
GLN 1150.0028
SER 1160.0022
LEU 1170.0020
ALA 1180.0012
LEU 1190.0006
GLY 1200.0012
ALA 1210.0017
PHE 1220.0016
SER 1230.0007
GLY 1240.0011
LEU 1250.0019
SER 1260.0017
SER 1270.0030
LEU 1280.0036
GLN 1290.0047
LYS 1300.0052
LEU 1310.0048
VAL 1320.0056
ALA 1330.0050
VAL 1340.0059
GLU 1350.0058
THR 1360.0048
ASN 1370.0053
LEU 1380.0048
ALA 1390.0049
SER 1400.0049
LEU 1410.0048
GLU 1420.0044
ASN 1430.0035
PHE 1440.0035
PRO 1450.0026
ILE 1460.0030
GLY 1470.0033
HIS 1480.0026
LEU 1490.0030
LYS 1500.0036
THR 1510.0038
LEU 1520.0044
LYS 1530.0054
GLU 1540.0058
LEU 1550.0055
ASN 1560.0061
VAL 1570.0057
ALA 1580.0067
HIS 1590.0071
ASN 1600.0064
LEU 1610.0064
ILE 1620.0073
GLN 1630.0079
SER 1640.0078
PHE 1650.0077
LYS 1660.0073
LEU 1670.0062
PRO 1680.0054
GLU 1690.0052
TYR 1700.0044
PHE 1710.0050
SER 1720.0053
ASN 1730.0044
LEU 1740.0047
THR 1750.0050
ASN 1760.0050
LEU 1770.0056
GLU 1780.0061
HIS 1790.0065
LEU 1800.0066
ASP 1810.0070
LEU 1820.0075
SER 1830.0081
SER 1840.0085
ASN 1850.0083
LYS 1860.0088
ILE 1870.0092
GLN 1880.0099
SER 1890.0096
ILE 1900.0090
TYR 1910.0092
CYS 1920.0086
THR 1930.0081
ASP 1940.0077
LEU 1950.0073
ARG 1960.0071
VAL 1970.0062
LEU 1980.0064
HIS 1990.0068
GLN 2000.0063
MET 2010.0060
PRO 2020.0066
LEU 2030.0060
LEU 2040.0060
ASN 2050.0061
LEU 2060.0065
SER 2070.0068
LEU 2080.0075
ASP 2090.0079
LEU 2100.0086
SER 2110.0089
LEU 2120.0094
ASN 2130.0097
PRO 2140.0103
MET 2150.0100
ASN 2160.0106
PHE 2170.0100
ILE 2180.0093
GLN 2190.0095
PRO 2200.0093
GLY 2210.0087
ALA 2220.0084
PHE 2230.0078
LYS 2240.0078
GLU 2250.0072
ILE 2260.0069
ARG 2270.0067
LEU 2280.0067
HIS 2290.0062
LYS 2300.0066
LEU 2310.0073
THR 2320.0076
LEU 2330.0082
ARG 2340.0084
ASN 2350.0093
ASN 2360.0098
PHE 2370.0098
ASP 2380.0107
SER 2390.0101
LEU 2400.0091
ASN 2410.0096
VAL 2420.0100
MET 2430.0089
LYS 2440.0086
THR 2450.0094
CYS 2460.0091
ILE 2470.0082
GLN 2480.0085
GLY 2490.0088
LEU 2500.0080
ALA 2510.0078
GLY 2520.0074
LEU 2530.0071
GLU 2540.0064
VAL 2550.0063
HIS 2560.0056
ARG 2570.0058
LEU 2580.0063
VAL 2590.0068
LEU 2600.0072
GLY 2610.0077
GLU 2620.0086
PHE 2630.0096
ARG 2640.0102
ASN 2650.0115
GLU 2660.0114
GLY 2670.0115
ASN 2680.0103
LEU 2690.0095
GLU 2700.0096
LYS 2710.0083
PHE 2720.0073
ASP 2730.0063
LYS 2740.0051
SER 2750.0059
ALA 2760.0066
LEU 2770.0061
GLU 2780.0059
GLY 2790.0067
LEU 2800.0060
CYS 2810.0054
ASN 2820.0065
LEU 2830.0063
THR 2840.0056
ILE 2850.0053
GLU 2860.0046
GLU 2870.0044
PHE 2880.0049
ARG 2890.0057
LEU 2900.0063
ALA 2910.0074
TYR 2920.0081
LEU 2930.0079
ASP 2940.0090
TYR 2950.0081
TYR 2960.0075
LEU 2970.0062
ASP 2980.0056
GLY 2990.0044
ILE 3000.0037
ILE 3010.0024
ASP 3020.0027
LEU 3030.0039
PHE 3040.0035
ASN 3050.0026
CYS 3060.0037
LEU 3070.0033
THR 3080.0018
ASN 3090.0023
VAL 3100.0028
SER 3110.0021
SER 3120.0029
PHE 3130.0034
SER 3140.0048
LEU 3150.0056
VAL 3160.0070
SER 3170.0083
VAL 3180.0073
THR 3190.0075
ILE 3200.0062
GLU 3210.0066
ARG 3220.0058
VAL 3230.0055
LYS 3240.0050
ASP 3250.0033
PHE 3260.0035
SER 3270.0039
TYR 3280.0023
ASN 3290.0021
PHE 3300.0008
GLY 3310.0009
TRP 3320.0009
GLN 3330.0008
HIS 3340.0020
LEU 3350.0031
GLU 3360.0045
LEU 3370.0057
VAL 3380.0073
ASN 3390.0089
CYS 3400.0081
LYS 3410.0088
PHE 3420.0082
GLY 3430.0088
GLN 3440.0087
PHE 3450.0081
PRO 3460.0064
THR 3470.0063
LEU 3480.0049
LYS 3490.0044
LEU 3500.0030
LYS 3510.0035
SER 3520.0024
LEU 3530.0020
LYS 3540.0018
ARG 3550.0024
LEU 3560.0037
THR 3570.0050
PHE 3580.0064
THR 3590.0077
SER 3600.0094
ASN 3610.0091
LYS 3620.0109
GLY 3630.0106
GLY 3640.0106
ASN 3650.0104
ALA 3660.0109
PHE 3670.0098
SER 3680.0094
GLU 3690.0087
VAL 3700.0069
ASP 3710.0063
LEU 3720.0047
PRO 3730.0051
SER 3740.0037
LEU 3750.0036
GLU 3760.0033
PHE 3770.0032
LEU 3780.0048
ASP 3790.0058
LEU 3800.0074
SER 3810.0083
ARG 3820.0098
ASN 3830.0102
GLY 3840.0116
LEU 3850.0110
SER 3860.0121
PHE 3870.0116
LYS 3880.0128
GLY 3890.0125
CYS 3900.0109
CYS 3910.0096
SER 3920.0095
GLN 3930.0085
SER 3940.0093
ASP 3950.0090
PHE 3960.0073
GLY 3970.0069
THR 3980.0060
ILE 3990.0064
SER 4000.0050
LEU 4010.0048
LYS 4020.0042
TYR 4030.0043
LEU 4040.0060
ASP 4050.0067
LEU 4060.0084
SER 4070.0090
PHE 4080.0104
ASN 4090.0112
GLY 4100.0126
VAL 4110.0130
ILE 4120.0118
THR 4130.0128
MET 4140.0119
SER 4150.0128
SER 4160.0116
ASN 4170.0106
PHE 4180.0091
LEU 4190.0097
GLY 4200.0086
LEU 4210.0074
GLU 4220.0073
GLN 4230.0058
LEU 4240.0055
GLU 4250.0044
HIS 4260.0046
LEU 4270.0061
ASP 4280.0070
PHE 4290.0086
GLN 4300.0088
HIS 4310.0105
SER 4320.0109
ASN 4330.0122
LEU 4340.0116
LYS 4350.0129
GLN 4360.0133
MET 4370.0117
SER 4380.0125
GLU 4390.0136
PHE 4400.0126
SER 4410.0110
VAL 4420.0105
PHE 4430.0090
LEU 4440.0097
SER 4450.0091
LEU 4460.0075
ARG 4470.0072
ASN 4480.0057
LEU 4490.0054
ILE 4500.0042
TYR 4510.0046
LEU 4520.0059
ASP 4530.0068
ILE 4540.0082
SER 4550.0085
HIS 4560.0101
THR 4570.0104
HIS 4580.0115
THR 4590.0109
ARG 4600.0115
VAL 4610.0107
ALA 4620.0119
PHE 4630.0116
ASN 4640.0104
GLY 4650.0104
ILE 4660.0099
PHE 4670.0085
ASN 4680.0091
GLY 4690.0086
LEU 4700.0071
SER 4710.0067
SER 4720.0053
LEU 4730.0050
GLU 4740.0038
VAL 4750.0043
LEU 4760.0055
LYS 4770.0063
MET 4780.0075
ALA 4790.0081
GLY 4800.0096
ASN 4810.0099
SER 4820.0104
PHE 4830.0099
GLN 4840.0111
GLU 4850.0109
ASN 4860.0095
PHE 4870.0085
LEU 4880.0075
PRO 4890.0081
ASP 4900.0076
ILE 4910.0079
PHE 4920.0066
THR 4930.0071
GLU 4940.0073
LEU 4950.0059
ARG 4960.0054
ASN 4970.0044
LEU 4980.0040
THR 4990.0033
PHE 5000.0040
LEU 5010.0047
ASP 5020.0059
LEU 5030.0065
SER 5040.0074
GLN 5050.0088
CYS 5060.0086
GLN 5070.0090
LEU 5080.0076
GLU 5090.0074
GLN 5100.0066
LEU 5110.0058
SER 5120.0064
PRO 5130.0054
THR 5140.0060
ALA 5150.0059
PHE 5160.0047
ASN 5170.0051
SER 5180.0056
LEU 5190.0044
SER 5200.0043
SER 5210.0037
LEU 5220.0033
GLN 5230.0035
VAL 5240.0041
LEU 5250.0043
ASN 5260.0056
MET 5270.0058
SER 5280.0071
HIS 5290.0085
ASN 5300.0078
ASN 5310.0079
PHE 5320.0064
PHE 5330.0062
SER 5340.0048
LEU 5350.0043
ASP 5360.0034
THR 5370.0033
PHE 5380.0035
PRO 5390.0038
TYR 5400.0033
LYS 5410.0039
CYS 5420.0044
LEU 5430.0036
ASN 5440.0043
SER 5450.0038
LEU 5460.0036
GLN 5470.0045
VAL 5480.0049
LEU 5490.0047
ASP 5500.0059
TYR 5510.0062
SER 5520.0078
LEU 5530.0088
ASN 5540.0079
HIS 5550.0078
ILE 5560.0066
MET 5570.0068
THR 5580.0054
SER 5590.0043
LYS 5600.0036
LYS 5610.0032
GLN 5620.0038
GLU 5630.0039
LEU 5640.0043
GLN 5650.0051
HIS 5660.0043
PHE 5670.0042
PRO 5680.0045
SER 5690.0057
SER 5700.0051
LEU 5710.0050
ALA 5720.0060
PHE 5730.0063
LEU 5740.0060
ASN 5750.0070
LEU 5760.0073
THR 5770.0089
GLN 5780.0097
ASN 5790.0086
ASP 5800.0089
PHE 5810.0083
ALA 5820.0082
CYS 5830.0091
THR 5840.0085
CYS 5850.0082
GLU 5860.0066
HIS 5870.0064
GLN 5880.0074
SER 5890.0064
PHE 5900.0060
LEU 5910.0077
GLN 5920.0081
TRP 5930.0070
ILE 5940.0076
LYS 5950.0091
ASP 5960.0086
GLN 5970.0076
ARG 5980.0089
GLN 5990.0087
LEU 6000.0071
LEU 6010.0078
VAL 6020.0082
GLU 6030.0096
VAL 6040.0102
GLU 6050.0115
ARG 6060.0109
MET 6070.0099
GLU 6080.0108
CYS 6090.0105
ALA 6100.0106
THR 6110.0100
PRO 6120.0107
SER 6130.0123
ASP 6140.0130
LYS 6150.0120
GLN 6160.0120
GLY 6170.0129
MET 6180.0126
PRO 6190.0117
VAL 6200.0102
LEU 6210.0106
SER 6220.0122
LEU 6230.0115
ASN 6240.0119
ILE 6250.0106
THR 6260.0114
CYS 6270.0110
GLU 10.0173
ALA 20.0151
ALA 30.0127
ALA 40.0112
LYS 50.0094
MET 60.0075
GLN 70.0050
ARG 80.0049
LEU 90.0021
VAL 100.0017
LEU 110.0024
LEU 120.0030
LEU 130.0037
ALA 140.0047
ILE 150.0062
SER 160.0065
LEU 170.0066
LEU 180.0067
LEU 190.0065
TYR 200.0064
GLN 210.0063
ASP 220.0058
LEU 230.0051
PRO 240.0043
VAL 250.0047
ARG 260.0037
SER 270.0025
GLU 280.0029
PHE 290.0038
GLU 300.0027
LEU 310.0024
ASP 320.0033
ARG 330.0041
ILE 340.0038
CYS 350.0043
GLY 360.0050
TYR 370.0042
GLY 380.0039
THR 390.0057
ALA 400.0060
ARG 410.0057
CYS 420.0059
ARG 430.0064
LYS 440.0068
LYS 450.0071
CYS 460.0068
ARG 470.0065
SER 480.0062
GLN 490.0063
GLU 500.0066
TYR 510.0066
ARG 520.0068
ILE 530.0065
GLY 540.0067
ARG 550.0067
CYS 560.0056
PRO 570.0051
ASN 580.0056
THR 590.0066
TYR 600.0066
ALA 610.0067
CYS 620.0063
CYS 630.0066
LEU 640.0064
ARG 650.0067
LYS 660.0078
TRP 670.0090
ASP 680.0081
GLU 690.0080
SER 700.0082
LEU 710.0095
LEU 720.0100
ASN 730.0085
ARG 740.0087
THR 750.0104
LYS 760.0088
PRO 770.0081
GLU 780.0078
ALA 790.0089
ALA 800.0094
ALA 810.0161
LYS 820.0148
LYS 830.0136
GLU 840.0137
MET 850.0122
ASN 860.0167
LEU 870.0146
SER 880.0181
VAL 890.0186
GLY 900.0210
LEU 910.0255
GLY 920.0274
GLY 930.0332
GLY 940.0329
SER 950.0322
ASN 960.0275
LEU 970.0249
SER 980.0224
VAL 990.0184
GLY 1000.0173
LEU 1010.0133
GLY 1020.0148
GLU 1030.0139
ILE 1040.0144
GLY 1050.0139
GLY 1060.0107
GLY 1070.0097
SER 1080.0076
LYS 1090.0093
LEU 1100.0103
LEU 1110.0138
ASP 1120.0194
ILE 1130.0220
ASN 1140.0277
LEU 1150.0292
GLY 1160.0367
ARG 1170.0412
GLY 1180.0391
GLY 1190.0346
GLY 1200.0271
SER 1210.0239
MET 1220.0184
VAL 1230.0169
ASP 1240.0128
LEU 1250.0106
THR 1260.0105
PHE 1270.0088
GLY 1280.0122
GLY 1290.0127
VAL 1300.0126
GLY 1310.0166
GLY 1320.0145
GLY 1330.0152
SER 1340.0116
THR 1350.0126
PHE 1360.0094
THR 1370.0128
PHE 1380.0121
PHE 1390.0166
PRO 1400.0175
LEU 1410.0217
VAL 1420.0256
ILE 1430.0285
GLY 1440.0346
GLY 1450.0372
GLY 1460.0385
SER 1470.0352
ASP 1480.0318
ALA 1490.0275
MET 1500.0225
TYR 1510.0189
LEU 1520.0144
GLY 1530.0141
PHE 1540.0109
ALA 1550.0132
ALA 1560.0128
GLY 1570.0167
GLY 1580.0189
GLY 1590.0203
SER 1600.0209
ALA 1610.0192
GLY 1620.0183
GLY 1630.0153
GLU 1640.0114
ASN 1650.0074
HIS 1660.0063
VAL 1670.0073
ALA 1680.0097
PHE 1690.0142
GLY 1700.0155
PRO 1710.0195
GLY 1720.0187
PRO 1730.0213
GLY 1740.0171
VAL 1750.0139
ASP 1760.0091
LEU 1770.0085
THR 1780.0072
PHE 1790.0103
GLY 1800.0136
GLY 1810.0128
VAL 1820.0132
GLN 1830.0099
PHE 1840.0129
ALA 1850.0140
MET 1860.0186
VAL 1870.0210
ASN 1880.0231
ASN 1890.0257
GLY 1900.0277
PRO 1910.0161
GLY 1920.0154
PRO 1930.0404
GLY 1940.0534
GLU 1950.0354
SER 1960.0313
PHE 1970.0308
THR 1980.0256
ALA 1990.0269
GLN 2000.0280
PRO 2010.0275
ALA 2020.0291
ASP 2030.0303
MET 2040.0258
GLN 2050.0247
ALA 2060.0216
GLY 2070.0382
ILE 2080.0244
LYS 2090.0422
GLY 2100.0373
PRO 2110.0254
GLY 2120.0177
PRO 2130.0204
GLY 2140.0379
GLY 2150.0278
SER 2160.0344
ILE 2170.0250
GLN 2180.0180
VAL 2190.0135
ILE 2200.0134
ASN 2210.0166
GLY 2220.0157
SER 2230.0257
THR 2240.0295
ILE 2250.0292
GLY 2260.0416
THR 2270.0478
GLY 2280.0462
SER 2290.0447
LYS 2300.0333
LYS 2310.0256
THR 2320.0176
ILE 2330.0150
LEU 2340.0087
ILE 2350.0092
TYR 2360.0088
SER 2370.0107
ILE 2380.0123
ILE 2390.0121
GLY 2400.0146
VAL 2410.0149
LYS 2420.0143
LYS 2430.0154
GLY 2440.0157
THR 2450.0144
LEU 2460.0135
ALA 2470.0114
TRP 2480.0083
ALA 2490.0073
ARG 2500.0056
THR 2510.0070
GLY 2520.0076
PHE 2530.0074
SER 2540.0087
PRO 2550.0110
ALA 2560.0118
LYS 2570.0139
LYS 2580.0220
LEU 2590.0247
ASN 2600.0344
ALA 2610.0329
GLY 2620.0242
VAL 2630.0198
VAL 2640.0141
ARG 2650.0090
VAL 2660.0090
PHE 2670.0088
PHE 2680.0084
LEU 2690.0103
ASN 2700.0116
GLN 2710.0107
LYS 2720.0109
LYS 2730.0112
ALA 2740.0102
LYS 2750.0092
ASP 2760.0108
VAL 2770.0109
LEU 2780.0097
ARG 2790.0099
LYS 2800.0111
THR 2810.0122
SER 2820.0109
ARG 2830.0087
PRO 2840.0098
MET 2850.0076
VAL 2860.0113
ASP 2870.0021
LEU 2880.0125
THR 2890.0208
PHE 2900.0298
GLY 2910.0513
GLY 2920.0709

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.