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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 25  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0559
GLU 270.0047
PRO 280.0055
CYS 290.0060
VAL 300.0088
GLU 310.0101
VAL 320.0117
VAL 330.0128
PRO 340.0124
ASN 350.0114
ILE 360.0112
THR 370.0095
TYR 380.0074
GLN 390.0070
CYS 400.0047
MET 410.0062
GLU 420.0075
LEU 430.0062
ASN 440.0065
PHE 450.0040
TYR 460.0057
LYS 470.0043
ILE 480.0027
PRO 490.0019
ASP 500.0045
ASN 510.0044
LEU 520.0059
PRO 530.0088
PHE 540.0099
SER 550.0112
THR 560.0089
LYS 570.0092
ASN 580.0076
LEU 590.0051
ASP 600.0044
LEU 610.0024
SER 620.0044
PHE 630.0064
ASN 640.0053
PRO 650.0068
LEU 660.0053
ARG 670.0074
HIS 680.0079
LEU 690.0069
GLY 700.0090
SER 710.0101
TYR 720.0095
SER 730.0069
PHE 740.0063
PHE 750.0088
SER 760.0078
PHE 770.0078
PRO 780.0103
GLU 790.0105
LEU 800.0079
GLN 810.0080
VAL 820.0058
LEU 830.0034
ASP 840.0025
LEU 850.0013
SER 860.0036
ARG 870.0057
CYS 880.0048
GLU 890.0071
ILE 900.0063
GLN 910.0087
THR 920.0089
ILE 930.0077
GLU 940.0098
ASP 950.0110
GLY 960.0103
ALA 970.0080
TYR 980.0072
GLN 990.0099
SER 1000.0100
LEU 1010.0085
SER 1020.0103
HIS 1030.0099
LEU 1040.0073
SER 1050.0071
THR 1060.0048
LEU 1070.0027
ILE 1080.0011
LEU 1090.0016
THR 1100.0033
GLY 1110.0055
ASN 1120.0056
PRO 1130.0079
ILE 1140.0075
GLN 1150.0099
SER 1160.0102
LEU 1170.0087
ALA 1180.0102
LEU 1190.0105
GLY 1200.0105
ALA 1210.0083
PHE 1220.0072
SER 1230.0095
GLY 1240.0099
LEU 1250.0082
SER 1260.0101
SER 1270.0086
LEU 1280.0064
GLN 1290.0061
LYS 1300.0041
LEU 1310.0022
VAL 1320.0007
ALA 1330.0017
VAL 1340.0030
GLU 1350.0051
THR 1360.0050
ASN 1370.0062
LEU 1380.0051
ALA 1390.0060
SER 1400.0052
LEU 1410.0043
GLU 1420.0063
ASN 1430.0071
PHE 1440.0057
PRO 1450.0067
ILE 1460.0058
GLY 1470.0073
HIS 1480.0085
LEU 1490.0071
LYS 1500.0082
THR 1510.0079
LEU 1520.0054
LYS 1530.0054
GLU 1540.0038
LEU 1550.0020
ASN 1560.0011
VAL 1570.0012
ALA 1580.0026
HIS 1590.0043
ASN 1600.0043
LEU 1610.0054
ILE 1620.0032
GLN 1630.0037
SER 1640.0028
PHE 1650.0015
LYS 1660.0028
LEU 1670.0034
PRO 1680.0053
GLU 1690.0067
TYR 1700.0068
PHE 1710.0055
SER 1720.0071
ASN 1730.0078
LEU 1740.0064
THR 1750.0076
ASN 1760.0072
LEU 1770.0050
GLU 1780.0051
HIS 1790.0037
LEU 1800.0022
ASP 1810.0017
LEU 1820.0011
SER 1830.0026
SER 1840.0036
ASN 1850.0031
LYS 1860.0037
ILE 1870.0021
GLN 1880.0026
SER 1890.0017
ILE 1900.0009
TYR 1910.0009
CYS 1920.0017
THR 1930.0027
ASP 1940.0022
LEU 1950.0027
ARG 1960.0040
VAL 1970.0046
LEU 1980.0042
HIS 1990.0050
GLN 2000.0062
MET 2010.0065
PRO 2020.0067
LEU 2030.0073
LEU 2040.0058
ASN 2050.0057
LEU 2060.0043
SER 2070.0038
LEU 2080.0029
ASP 2090.0029
LEU 2100.0025
SER 2110.0034
LEU 2120.0036
ASN 2130.0030
PRO 2140.0034
MET 2150.0030
ASN 2160.0032
PHE 2170.0027
ILE 2180.0023
GLN 2190.0019
PRO 2200.0027
GLY 2210.0030
ALA 2220.0022
PHE 2230.0031
LYS 2240.0039
GLU 2250.0048
ILE 2260.0042
ARG 2270.0046
LEU 2280.0043
HIS 2290.0048
LYS 2300.0044
LEU 2310.0039
THR 2320.0037
LEU 2330.0039
ARG 2340.0041
ASN 2350.0044
ASN 2360.0041
PHE 2370.0045
ASP 2380.0049
SER 2390.0054
LEU 2400.0057
ASN 2410.0056
VAL 2420.0048
MET 2430.0049
LYS 2440.0052
THR 2450.0046
CYS 2460.0040
ILE 2470.0045
GLN 2480.0046
GLY 2490.0036
LEU 2500.0039
ALA 2510.0045
GLY 2520.0048
LEU 2530.0045
GLU 2540.0050
VAL 2550.0048
HIS 2560.0053
ARG 2570.0051
LEU 2580.0050
VAL 2590.0049
LEU 2600.0050
GLY 2610.0052
GLU 2620.0045
PHE 2630.0042
ARG 2640.0045
ASN 2650.0043
GLU 2660.0044
GLY 2670.0048
ASN 2680.0051
LEU 2690.0054
GLU 2700.0059
LYS 2710.0062
PHE 2720.0064
ASP 2730.0069
LYS 2740.0071
SER 2750.0069
ALA 2760.0063
LEU 2770.0062
GLU 2780.0065
GLY 2790.0059
LEU 2800.0059
CYS 2810.0064
ASN 2820.0058
LEU 2830.0054
THR 2840.0057
ILE 2850.0056
GLU 2860.0059
GLU 2870.0057
PHE 2880.0057
ARG 2890.0055
LEU 2900.0056
ALA 2910.0053
TYR 2920.0049
LEU 2930.0053
ASP 2940.0054
TYR 2950.0058
TYR 2960.0061
LEU 2970.0063
ASP 2980.0067
GLY 2990.0067
ILE 3000.0066
ILE 3010.0072
ASP 3020.0074
LEU 3030.0069
PHE 3040.0067
ASN 3050.0071
CYS 3060.0068
LEU 3070.0065
THR 3080.0067
ASN 3090.0066
VAL 3100.0062
SER 3110.0059
SER 3120.0058
PHE 3130.0059
SER 3140.0056
LEU 3150.0057
VAL 3160.0054
SER 3170.0053
VAL 3180.0056
THR 3190.0058
ILE 3200.0060
GLU 3210.0061
ARG 3220.0061
VAL 3230.0058
LYS 3240.0061
ASP 3250.0064
PHE 3260.0059
SER 3270.0060
TYR 3280.0065
ASN 3290.0065
PHE 3300.0065
GLY 3310.0064
TRP 3320.0060
GLN 3330.0058
HIS 3340.0056
LEU 3350.0055
GLU 3360.0054
LEU 3370.0052
VAL 3380.0050
ASN 3390.0051
CYS 3400.0054
LYS 3410.0054
PHE 3420.0051
GLY 3430.0052
GLN 3440.0048
PHE 3450.0045
PRO 3460.0049
THR 3470.0048
LEU 3480.0049
LYS 3490.0051
LEU 3500.0054
LYS 3510.0055
SER 3520.0057
LEU 3530.0054
LYS 3540.0052
ARG 3550.0051
LEU 3560.0049
THR 3570.0046
PHE 3580.0046
THR 3590.0045
SER 3600.0046
ASN 3610.0049
LYS 3620.0049
GLY 3630.0050
GLY 3640.0046
ASN 3650.0038
ALA 3660.0033
PHE 3670.0028
SER 3680.0029
GLU 3690.0025
VAL 3700.0031
ASP 3710.0033
LEU 3720.0040
PRO 3730.0041
SER 3740.0047
LEU 3750.0042
GLU 3760.0041
PHE 3770.0041
LEU 3780.0035
ASP 3790.0037
LEU 3800.0034
SER 3810.0035
ARG 3820.0036
ASN 3830.0041
GLY 3840.0038
LEU 3850.0031
SER 3860.0030
PHE 3870.0025
LYS 3880.0032
GLY 3890.0030
CYS 3900.0017
CYS 3910.0015
SER 3920.0013
GLN 3930.0015
SER 3940.0002
ASP 3950.0007
PHE 3960.0018
GLY 3970.0019
THR 3980.0025
ILE 3990.0030
SER 4000.0039
LEU 4010.0033
LYS 4020.0041
TYR 4030.0036
LEU 4040.0023
ASP 4050.0024
LEU 4060.0017
SER 4070.0019
PHE 4080.0028
ASN 4090.0029
GLY 4100.0034
VAL 4110.0034
ILE 4120.0025
THR 4130.0036
MET 4140.0034
SER 4150.0044
SER 4160.0041
ASN 4170.0047
PHE 4180.0034
LEU 4190.0041
GLY 4200.0038
LEU 4210.0036
GLU 4220.0051
GLN 4230.0053
LEU 4240.0043
GLU 4250.0054
HIS 4260.0043
LEU 4270.0024
ASP 4280.0016
PHE 4290.0004
GLN 4300.0009
HIS 4310.0018
SER 4320.0019
ASN 4330.0028
LEU 4340.0027
LYS 4350.0041
GLN 4360.0051
MET 4370.0048
SER 4380.0063
GLU 4390.0074
PHE 4400.0073
SER 4410.0068
VAL 4420.0052
PHE 4430.0051
LEU 4440.0067
SER 4450.0066
LEU 4460.0060
ARG 4470.0077
ASN 4480.0074
LEU 4490.0061
ILE 4500.0067
TYR 4510.0053
LEU 4520.0035
ASP 4530.0023
ILE 4540.0014
SER 4550.0006
HIS 4560.0011
THR 4570.0018
HIS 4580.0031
THR 4590.0034
ARG 4600.0045
VAL 4610.0049
ALA 4620.0070
PHE 4630.0078
ASN 4640.0081
GLY 4650.0084
ILE 4660.0065
PHE 4670.0066
ASN 4680.0085
GLY 4690.0088
LEU 4700.0079
SER 4710.0097
SER 4720.0094
LEU 4730.0078
GLU 4740.0081
VAL 4750.0065
LEU 4760.0049
LYS 4770.0028
MET 4780.0018
ALA 4790.0009
GLY 4800.0012
ASN 4810.0019
SER 4820.0033
PHE 4830.0043
GLN 4840.0061
GLU 4850.0061
ASN 4860.0041
PHE 4870.0046
LEU 4880.0044
PRO 4890.0067
ASP 4900.0081
ILE 4910.0077
PHE 4920.0080
THR 4930.0103
GLU 4940.0107
LEU 4950.0094
ARG 4960.0113
ASN 4970.0109
LEU 4980.0090
THR 4990.0093
PHE 5000.0075
LEU 5010.0058
ASP 5020.0036
LEU 5030.0022
SER 5040.0020
GLN 5050.0018
CYS 5060.0011
GLN 5070.0027
LEU 5080.0018
GLU 5090.0023
GLN 5100.0029
LEU 5110.0040
SER 5120.0063
PRO 5130.0070
THR 5140.0088
ALA 5150.0074
PHE 5160.0081
ASN 5170.0102
SER 5180.0114
LEU 5190.0104
SER 5200.0124
SER 5210.0123
LEU 5220.0102
GLN 5230.0106
VAL 5240.0087
LEU 5250.0066
ASN 5260.0052
MET 5270.0033
SER 5280.0039
HIS 5290.0037
ASN 5300.0024
ASN 5310.0032
PHE 5320.0025
PHE 5330.0038
SER 5340.0030
LEU 5350.0040
ASP 5360.0038
THR 5370.0063
PHE 5380.0069
PRO 5390.0070
TYR 5400.0082
LYS 5410.0102
CYS 5420.0113
LEU 5430.0110
ASN 5440.0132
SER 5450.0131
LEU 5460.0112
GLN 5470.0119
VAL 5480.0101
LEU 5490.0079
ASP 5500.0069
TYR 5510.0055
SER 5520.0066
LEU 5530.0065
ASN 5540.0051
HIS 5550.0061
ILE 5560.0057
MET 5570.0075
THR 5580.0061
SER 5590.0047
LYS 5600.0026
LYS 5610.0031
GLN 5620.0049
GLU 5630.0065
LEU 5640.0076
GLN 5650.0101
HIS 5660.0099
PHE 5670.0100
PRO 5680.0119
SER 5690.0139
SER 5700.0141
LEU 5710.0124
ALA 5720.0136
PHE 5730.0120
LEU 5740.0099
ASN 5750.0094
LEU 5760.0086
THR 5770.0098
GLN 5780.0098
ASN 5790.0085
ASP 5800.0098
PHE 5810.0104
ALA 5820.0114
CYS 5830.0138
THR 5840.0138
CYS 5850.0139
GLU 5860.0111
HIS 5870.0099
GLN 5880.0119
SER 5890.0101
PHE 5900.0093
LEU 5910.0120
GLN 5920.0133
TRP 5930.0120
ILE 5940.0125
LYS 5950.0154
ASP 5960.0154
GLN 5970.0141
ARG 5980.0155
GLN 5990.0164
LEU 6000.0137
LEU 6010.0129
VAL 6020.0132
GLU 6030.0140
VAL 6040.0156
GLU 6050.0163
ARG 6060.0137
MET 6070.0131
GLU 6080.0143
CYS 6090.0144
ALA 6100.0138
THR 6110.0140
PRO 6120.0164
SER 6130.0187
ASP 6140.0205
LYS 6150.0185
GLN 6160.0172
GLY 6170.0175
MET 6180.0183
PRO 6190.0170
VAL 6200.0152
LEU 6210.0169
SER 6220.0194
LEU 6230.0183
ASN 6240.0196
ILE 6250.0176
THR 6260.0193
CYS 6270.0189
GLU 10.0075
ALA 20.0046
ALA 30.0041
ALA 40.0051
LYS 50.0045
MET 60.0034
GLN 70.0034
ARG 80.0034
LEU 90.0047
VAL 100.0050
LEU 110.0036
LEU 120.0045
LEU 130.0065
ALA 140.0059
ILE 150.0045
SER 160.0059
LEU 170.0069
LEU 180.0056
LEU 190.0051
TYR 200.0067
GLN 210.0067
ASP 220.0053
LEU 230.0052
PRO 240.0059
VAL 250.0072
ARG 260.0052
SER 270.0052
GLU 280.0055
PHE 290.0060
GLU 300.0058
LEU 310.0058
ASP 320.0063
ARG 330.0063
ILE 340.0066
CYS 350.0075
GLY 360.0073
TYR 370.0072
GLY 380.0070
THR 390.0072
ALA 400.0072
ARG 410.0072
CYS 420.0080
ARG 430.0080
LYS 440.0090
LYS 450.0091
CYS 460.0091
ARG 470.0078
SER 480.0076
GLN 490.0069
GLU 500.0080
TYR 510.0093
ARG 520.0101
ILE 530.0106
GLY 540.0112
ARG 550.0111
CYS 560.0100
PRO 570.0102
ASN 580.0097
THR 590.0110
TYR 600.0099
ALA 610.0099
CYS 620.0094
CYS 630.0086
LEU 640.0083
ARG 650.0073
LYS 660.0083
TRP 670.0079
ASP 680.0059
GLU 690.0053
SER 700.0043
LEU 710.0062
LEU 720.0074
ASN 730.0060
ARG 740.0065
THR 750.0087
LYS 760.0106
PRO 770.0127
GLU 780.0122
ALA 790.0143
ALA 800.0167
ALA 810.0175
LYS 820.0205
LYS 830.0168
GLU 840.0173
MET 850.0167
ASN 860.0164
LEU 870.0175
SER 880.0172
VAL 890.0210
GLY 900.0215
LEU 910.0274
GLY 920.0297
GLY 930.0327
GLY 940.0284
SER 950.0287
ASN 960.0237
LEU 970.0253
SER 980.0224
VAL 990.0242
GLY 1000.0236
LEU 1010.0263
GLY 1020.0324
GLU 1030.0349
ILE 1040.0429
GLY 1050.0475
GLY 1060.0449
GLY 1070.0388
SER 1080.0296
LYS 1090.0278
LEU 1100.0250
LEU 1110.0255
ASP 1120.0287
ILE 1130.0271
ASN 1140.0315
LEU 1150.0310
GLY 1160.0354
ARG 1170.0390
GLY 1180.0375
GLY 1190.0368
GLY 1200.0334
SER 1210.0305
MET 1220.0258
VAL 1230.0230
ASP 1240.0178
LEU 1250.0160
THR 1260.0113
PHE 1270.0111
GLY 1280.0091
GLY 1290.0096
VAL 1300.0149
GLY 1310.0170
GLY 1320.0187
GLY 1330.0157
SER 1340.0167
THR 1350.0142
PHE 1360.0164
THR 1370.0184
PHE 1380.0194
PHE 1390.0226
PRO 1400.0244
LEU 1410.0270
VAL 1420.0296
ILE 1430.0305
GLY 1440.0338
GLY 1450.0345
GLY 1460.0372
SER 1470.0357
ASP 1480.0325
ALA 1490.0306
MET 1500.0265
TYR 1510.0251
LEU 1520.0231
GLY 1530.0233
PHE 1540.0217
ALA 1550.0221
ALA 1560.0216
GLY 1570.0197
GLY 1580.0191
GLY 1590.0147
SER 1600.0126
ALA 1610.0084
GLY 1620.0082
GLY 1630.0056
GLU 1640.0053
ASN 1650.0081
HIS 1660.0111
VAL 1670.0155
ALA 1680.0189
PHE 1690.0238
GLY 1700.0268
PRO 1710.0331
GLY 1720.0336
PRO 1730.0340
GLY 1740.0283
VAL 1750.0238
ASP 1760.0202
LEU 1770.0159
THR 1780.0120
PHE 1790.0080
GLY 1800.0064
GLY 1810.0116
VAL 1820.0128
GLN 1830.0166
PHE 1840.0184
ALA 1850.0238
MET 1860.0265
VAL 1870.0312
ASN 1880.0344
ASN 1890.0378
GLY 1900.0415
PRO 1910.0308
GLY 1920.0393
PRO 1930.0330
GLY 1940.0242
GLU 1950.0233
SER 1960.0371
PHE 1970.0289
THR 1980.0274
ALA 1990.0253
GLN 2000.0226
PRO 2010.0238
ALA 2020.0222
ASP 2030.0247
MET 2040.0283
GLN 2050.0339
ALA 2060.0390
GLY 2070.0423
ILE 2080.0241
LYS 2090.0258
GLY 2100.0174
PRO 2110.0119
GLY 2120.0352
PRO 2130.0559
GLY 2140.0490
GLY 2150.0197
SER 2160.0107
ILE 2170.0126
GLN 2180.0160
VAL 2190.0208
ILE 2200.0289
ASN 2210.0271
GLY 2220.0231
SER 2230.0226
THR 2240.0206
ILE 2250.0175
GLY 2260.0190
THR 2270.0192
GLY 2280.0162
SER 2290.0144
LYS 2300.0106
LYS 2310.0115
THR 2320.0098
ILE 2330.0090
LEU 2340.0090
ILE 2350.0094
TYR 2360.0062
SER 2370.0055
ILE 2380.0041
ILE 2390.0043
GLY 2400.0037
VAL 2410.0043
LYS 2420.0041
LYS 2430.0048
GLY 2440.0051
THR 2450.0044
LEU 2460.0030
ALA 2470.0033
TRP 2480.0045
ALA 2490.0055
ARG 2500.0070
THR 2510.0088
GLY 2520.0064
PHE 2530.0047
SER 2540.0024
PRO 2550.0040
ALA 2560.0073
LYS 2570.0108
LYS 2580.0099
LEU 2590.0060
ASN 2600.0072
ALA 2610.0091
GLY 2620.0087
VAL 2630.0105
VAL 2640.0131
ARG 2650.0132
VAL 2660.0092
PHE 2670.0090
PHE 2680.0087
LEU 2690.0090
ASN 2700.0085
GLN 2710.0046
LYS 2720.0051
LYS 2730.0056
ALA 2740.0043
LYS 2750.0026
ASP 2760.0019
VAL 2770.0021
LEU 2780.0045
ARG 2790.0056
LYS 2800.0055
THR 2810.0068
SER 2820.0084
ARG 2830.0076
PRO 2840.0091
MET 2850.0103
VAL 2860.0126
ASP 2870.0110
LEU 2880.0092
THR 2890.0143
PHE 2900.0154
GLY 2910.0307
GLY 2920.0382

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.