CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
elNémo has been relocated.
**Some cleaning from time to time**
Sorry for the inconvenience.


***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 26  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0841
GLU 270.0096
PRO 280.0094
CYS 290.0089
VAL 300.0099
GLU 310.0103
VAL 320.0102
VAL 330.0103
PRO 340.0109
ASN 350.0100
ILE 360.0088
THR 370.0082
TYR 380.0080
GLN 390.0078
CYS 400.0071
MET 410.0071
GLU 420.0073
LEU 430.0073
ASN 440.0061
PHE 450.0052
TYR 460.0038
LYS 470.0037
ILE 480.0043
PRO 490.0060
ASP 500.0069
ASN 510.0084
LEU 520.0083
PRO 530.0089
PHE 540.0083
SER 550.0084
THR 560.0075
LYS 570.0065
ASN 580.0061
LEU 590.0056
ASP 600.0056
LEU 610.0049
SER 620.0050
PHE 630.0055
ASN 640.0049
PRO 650.0040
LEU 660.0028
ARG 670.0023
HIS 680.0011
LEU 690.0011
GLY 700.0019
SER 710.0030
TYR 720.0039
SER 730.0032
PHE 740.0040
PHE 750.0052
SER 760.0061
PHE 770.0059
PRO 780.0062
GLU 790.0063
LEU 800.0051
GLN 810.0044
VAL 820.0039
LEU 830.0034
ASP 840.0037
LEU 850.0031
SER 860.0040
ARG 870.0041
CYS 880.0034
GLU 890.0035
ILE 900.0023
GLN 910.0026
THR 920.0018
ILE 930.0012
GLU 940.0020
ASP 950.0030
GLY 960.0032
ALA 970.0022
TYR 980.0025
GLN 990.0037
SER 1000.0046
LEU 1010.0039
SER 1020.0041
HIS 1030.0042
LEU 1040.0030
SER 1050.0026
THR 1060.0024
LEU 1070.0018
ILE 1080.0024
LEU 1090.0024
THR 1100.0035
GLY 1110.0041
ASN 1120.0034
PRO 1130.0039
ILE 1140.0031
GLN 1150.0037
SER 1160.0032
LEU 1170.0028
ALA 1180.0031
LEU 1190.0036
GLY 1200.0032
ALA 1210.0020
PHE 1220.0018
SER 1230.0029
GLY 1240.0033
LEU 1250.0024
SER 1260.0032
SER 1270.0024
LEU 1280.0013
GLN 1290.0011
LYS 1300.0013
LEU 1310.0013
VAL 1320.0022
ALA 1330.0025
VAL 1340.0034
GLU 1350.0041
THR 1360.0034
ASN 1370.0044
LEU 1380.0040
ALA 1390.0048
SER 1400.0045
LEU 1410.0037
GLU 1420.0043
ASN 1430.0041
PHE 1440.0032
PRO 1450.0029
ILE 1460.0023
GLY 1470.0027
HIS 1480.0026
LEU 1490.0019
LYS 1500.0021
THR 1510.0017
LEU 1520.0009
LYS 1530.0008
GLU 1540.0013
LEU 1550.0018
ASN 1560.0025
VAL 1570.0032
ALA 1580.0039
HIS 1590.0045
ASN 1600.0045
LEU 1610.0051
ILE 1620.0047
GLN 1630.0053
SER 1640.0048
PHE 1650.0041
LYS 1660.0041
LEU 1670.0035
PRO 1680.0038
GLU 1690.0038
TYR 1700.0033
PHE 1710.0027
SER 1720.0029
ASN 1730.0027
LEU 1740.0020
THR 1750.0020
ASN 1760.0013
LEU 1770.0012
GLU 1780.0010
HIS 1790.0016
LEU 1800.0023
ASP 1810.0029
LEU 1820.0037
SER 1830.0041
SER 1840.0048
ASN 1850.0049
LYS 1860.0054
ILE 1870.0047
GLN 1880.0050
SER 1890.0046
ILE 1900.0040
TYR 1910.0041
CYS 1920.0038
THR 1930.0042
ASP 1940.0038
LEU 1950.0031
ARG 1960.0034
VAL 1970.0030
LEU 1980.0024
HIS 1990.0027
GLN 2000.0030
MET 2010.0024
PRO 2020.0021
LEU 2030.0018
LEU 2040.0015
ASN 2050.0010
LEU 2060.0012
SER 2070.0018
LEU 2080.0024
ASP 2090.0030
LEU 2100.0035
SER 2110.0040
LEU 2120.0046
ASN 2130.0045
PRO 2140.0050
MET 2150.0044
ASN 2160.0046
PHE 2170.0041
ILE 2180.0034
GLN 2190.0034
PRO 2200.0028
GLY 2210.0025
ALA 2220.0028
PHE 2230.0021
LYS 2240.0019
GLU 2250.0017
ILE 2260.0016
ARG 2270.0012
LEU 2280.0013
HIS 2290.0011
LYS 2300.0016
LEU 2310.0021
THR 2320.0028
LEU 2330.0030
ARG 2340.0036
ASN 2350.0041
ASN 2360.0039
PHE 2370.0040
ASP 2380.0045
SER 2390.0041
LEU 2400.0035
ASN 2410.0032
VAL 2420.0036
MET 2430.0033
LYS 2440.0027
THR 2450.0027
CYS 2460.0029
ILE 2470.0024
GLN 2480.0021
GLY 2490.0024
LEU 2500.0019
ALA 2510.0014
GLY 2520.0013
LEU 2530.0013
GLU 2540.0011
VAL 2550.0013
HIS 2560.0014
ARG 2570.0018
LEU 2580.0020
VAL 2590.0025
LEU 2600.0028
GLY 2610.0035
GLU 2620.0040
PHE 2630.0047
ARG 2640.0053
ASN 2650.0057
GLU 2660.0053
GLY 2670.0052
ASN 2680.0048
LEU 2690.0042
GLU 2700.0045
LYS 2710.0041
PHE 2720.0039
ASP 2730.0038
LYS 2740.0035
SER 2750.0029
ALA 2760.0029
LEU 2770.0027
GLU 2780.0024
GLY 2790.0019
LEU 2800.0020
CYS 2810.0020
ASN 2820.0014
LEU 2830.0014
THR 2840.0015
ILE 2850.0018
GLU 2860.0020
GLU 2870.0023
PHE 2880.0025
ARG 2890.0028
LEU 2900.0032
ALA 2910.0035
TYR 2920.0041
LEU 2930.0041
ASP 2940.0047
TYR 2950.0045
TYR 2960.0050
LEU 2970.0048
ASP 2980.0052
GLY 2990.0049
ILE 3000.0044
ILE 3010.0046
ASP 3020.0041
LEU 3030.0038
PHE 3040.0036
ASN 3050.0036
CYS 3060.0031
LEU 3070.0032
THR 3080.0036
ASN 3090.0033
VAL 3100.0030
SER 3110.0030
SER 3120.0030
PHE 3130.0032
SER 3140.0033
LEU 3150.0036
VAL 3160.0037
SER 3170.0042
VAL 3180.0043
THR 3190.0048
ILE 3200.0049
GLU 3210.0055
ARG 3220.0055
VAL 3230.0052
LYS 3240.0055
ASP 3250.0051
PHE 3260.0048
SER 3270.0052
TYR 3280.0050
ASN 3290.0048
PHE 3300.0043
GLY 3310.0040
TRP 3320.0038
GLN 3330.0036
HIS 3340.0034
LEU 3350.0036
GLU 3360.0035
LEU 3370.0037
VAL 3380.0037
ASN 3390.0040
CYS 3400.0042
LYS 3410.0046
PHE 3420.0048
GLY 3430.0053
GLN 3440.0053
PHE 3450.0049
PRO 3460.0047
THR 3470.0050
LEU 3480.0046
LYS 3490.0048
LEU 3500.0045
LYS 3510.0046
SER 3520.0043
LEU 3530.0040
LYS 3540.0037
ARG 3550.0035
LEU 3560.0036
THR 3570.0034
PHE 3580.0037
THR 3590.0035
SER 3600.0037
ASN 3610.0041
LYS 3620.0042
GLY 3630.0044
GLY 3640.0046
ASN 3650.0045
ALA 3660.0047
PHE 3670.0042
SER 3680.0045
GLU 3690.0044
VAL 3700.0043
ASP 3710.0044
LEU 3720.0043
PRO 3730.0043
SER 3740.0041
LEU 3750.0038
GLU 3760.0035
PHE 3770.0035
LEU 3780.0034
ASP 3790.0033
LEU 3800.0034
SER 3810.0032
ARG 3820.0033
ASN 3830.0036
GLY 3840.0034
LEU 3850.0034
SER 3860.0033
PHE 3870.0029
LYS 3880.0028
GLY 3890.0027
CYS 3900.0027
CYS 3910.0027
SER 3920.0030
GLN 3930.0034
SER 3940.0035
ASP 3950.0035
PHE 3960.0037
GLY 3970.0038
THR 3980.0037
ILE 3990.0036
SER 4000.0037
LEU 4010.0035
LYS 4020.0036
TYR 4030.0034
LEU 4040.0031
ASP 4050.0029
LEU 4060.0028
SER 4070.0025
PHE 4080.0026
ASN 4090.0028
GLY 4100.0027
VAL 4110.0023
ILE 4120.0023
THR 4130.0023
MET 4140.0022
SER 4150.0022
SER 4160.0024
ASN 4170.0026
PHE 4180.0027
LEU 4190.0029
GLY 4200.0033
LEU 4210.0033
GLU 4220.0036
GLN 4230.0039
LEU 4240.0036
GLU 4250.0038
HIS 4260.0034
LEU 4270.0028
ASP 4280.0025
PHE 4290.0021
GLN 4300.0021
HIS 4310.0023
SER 4320.0023
ASN 4330.0022
LEU 4340.0021
LYS 4350.0022
GLN 4360.0023
MET 4370.0024
SER 4380.0029
GLU 4390.0030
PHE 4400.0030
SER 4410.0032
VAL 4420.0027
PHE 4430.0029
LEU 4440.0034
SER 4450.0035
LEU 4460.0036
ARG 4470.0043
ASN 4480.0044
LEU 4490.0038
ILE 4500.0041
TYR 4510.0035
LEU 4520.0028
ASP 4530.0024
ILE 4540.0020
SER 4550.0019
HIS 4560.0021
THR 4570.0023
HIS 4580.0024
THR 4590.0023
ARG 4600.0027
VAL 4610.0030
ALA 4620.0035
PHE 4630.0037
ASN 4640.0041
GLY 4650.0040
ILE 4660.0032
PHE 4670.0035
ASN 4680.0041
GLY 4690.0043
LEU 4700.0042
SER 4710.0049
SER 4720.0050
LEU 4730.0043
GLU 4740.0044
VAL 4750.0037
LEU 4760.0031
LYS 4770.0023
MET 4780.0021
ALA 4790.0020
GLY 4800.0021
ASN 4810.0022
SER 4820.0025
PHE 4830.0029
GLN 4840.0035
GLU 4850.0038
ASN 4860.0033
PHE 4870.0035
LEU 4880.0034
PRO 4890.0040
ASP 4900.0044
ILE 4910.0041
PHE 4920.0042
THR 4930.0051
GLU 4940.0052
LEU 4950.0047
ARG 4960.0055
ASN 4970.0054
LEU 4980.0046
THR 4990.0046
PHE 5000.0039
LEU 5010.0033
ASP 5020.0026
LEU 5030.0023
SER 5040.0022
GLN 5050.0022
CYS 5060.0022
GLN 5070.0024
LEU 5080.0025
GLU 5090.0029
GLN 5100.0032
LEU 5110.0034
SER 5120.0043
PRO 5130.0046
THR 5140.0049
ALA 5150.0043
PHE 5160.0043
ASN 5170.0052
SER 5180.0055
LEU 5190.0050
SER 5200.0056
SER 5210.0055
LEU 5220.0047
GLN 5230.0046
VAL 5240.0039
LEU 5250.0032
ASN 5260.0027
MET 5270.0023
SER 5280.0023
HIS 5290.0022
ASN 5300.0021
ASN 5310.0024
PHE 5320.0023
PHE 5330.0025
SER 5340.0024
LEU 5350.0024
ASP 5360.0029
THR 5370.0033
PHE 5380.0041
PRO 5390.0041
TYR 5400.0040
LYS 5410.0047
CYS 5420.0052
LEU 5430.0049
ASN 5440.0055
SER 5450.0054
LEU 5460.0045
GLN 5470.0045
VAL 5480.0038
LEU 5490.0032
ASP 5500.0028
TYR 5510.0023
SER 5520.0025
LEU 5530.0024
ASN 5540.0021
HIS 5550.0021
ILE 5560.0020
MET 5570.0023
THR 5580.0023
SER 5590.0024
LYS 5600.0031
LYS 5610.0034
GLN 5620.0033
GLU 5630.0037
LEU 5640.0031
GLN 5650.0036
HIS 5660.0041
PHE 5670.0038
PRO 5680.0045
SER 5690.0048
SER 5700.0050
LEU 5710.0043
ALA 5720.0044
PHE 5730.0039
LEU 5740.0031
ASN 5750.0030
LEU 5760.0026
THR 5770.0029
GLN 5780.0028
ASN 5790.0024
ASP 5800.0025
PHE 5810.0024
ALA 5820.0027
CYS 5830.0030
THR 5840.0032
CYS 5850.0030
GLU 5860.0029
HIS 5870.0024
GLN 5880.0022
SER 5890.0020
PHE 5900.0020
LEU 5910.0022
GLN 5920.0021
TRP 5930.0023
ILE 5940.0025
LYS 5950.0029
ASP 5960.0030
GLN 5970.0032
ARG 5980.0035
GLN 5990.0041
LEU 6000.0038
LEU 6010.0034
VAL 6020.0040
GLU 6030.0040
VAL 6040.0040
GLU 6050.0041
ARG 6060.0036
MET 6070.0032
GLU 6080.0034
CYS 6090.0033
ALA 6100.0033
THR 6110.0035
PRO 6120.0040
SER 6130.0046
ASP 6140.0050
LYS 6150.0043
GLN 6160.0042
GLY 6170.0043
MET 6180.0043
PRO 6190.0039
VAL 6200.0032
LEU 6210.0035
SER 6220.0041
LEU 6230.0036
ASN 6240.0036
ILE 6250.0029
THR 6260.0032
CYS 6270.0035
GLU 10.0083
ALA 20.0060
ALA 30.0025
ALA 40.0042
LYS 50.0049
MET 60.0038
GLN 70.0026
ARG 80.0023
LEU 90.0048
VAL 100.0056
LEU 110.0037
LEU 120.0037
LEU 130.0064
ALA 140.0065
ILE 150.0045
SER 160.0052
LEU 170.0065
LEU 180.0058
LEU 190.0045
TYR 200.0057
GLN 210.0061
ASP 220.0051
LEU 230.0043
PRO 240.0047
VAL 250.0056
ARG 260.0036
SER 270.0034
GLU 280.0031
PHE 290.0030
GLU 300.0030
LEU 310.0028
ASP 320.0025
ARG 330.0022
ILE 340.0024
CYS 350.0024
GLY 360.0027
TYR 370.0030
GLY 380.0026
THR 390.0025
ALA 400.0023
ARG 410.0018
CYS 420.0019
ARG 430.0015
LYS 440.0016
LYS 450.0014
CYS 460.0015
ARG 470.0012
SER 480.0014
GLN 490.0017
GLU 500.0018
TYR 510.0022
ARG 520.0023
ILE 530.0025
GLY 540.0026
ARG 550.0025
CYS 560.0026
PRO 570.0031
ASN 580.0027
THR 590.0027
TYR 600.0022
ALA 610.0019
CYS 620.0020
CYS 630.0018
LEU 640.0020
ARG 650.0020
LYS 660.0030
TRP 670.0039
ASP 680.0034
GLU 690.0039
SER 700.0039
LEU 710.0048
LEU 720.0051
ASN 730.0046
ARG 740.0051
THR 750.0059
LYS 760.0058
PRO 770.0058
GLU 780.0049
ALA 790.0051
ALA 800.0061
ALA 810.0151
LYS 820.0179
LYS 830.0203
GLU 840.0238
MET 850.0266
ASN 860.0266
LEU 870.0248
SER 880.0250
VAL 890.0241
GLY 900.0240
LEU 910.0246
GLY 920.0246
GLY 930.0289
GLY 940.0302
SER 950.0305
ASN 960.0284
LEU 970.0283
SER 980.0286
VAL 990.0282
GLY 1000.0292
LEU 1010.0255
GLY 1020.0263
GLU 1030.0245
ILE 1040.0263
GLY 1050.0253
GLY 1060.0242
GLY 1070.0228
SER 1080.0204
LYS 1090.0199
LEU 1100.0184
LEU 1110.0236
ASP 1120.0248
ILE 1130.0233
ASN 1140.0252
LEU 1150.0231
GLY 1160.0243
ARG 1170.0225
GLY 1180.0224
GLY 1190.0193
GLY 1200.0182
SER 1210.0187
MET 1220.0164
VAL 1230.0186
ASP 1240.0184
LEU 1250.0193
THR 1260.0228
PHE 1270.0246
GLY 1280.0288
GLY 1290.0279
VAL 1300.0313
GLY 1310.0338
GLY 1320.0325
GLY 1330.0255
SER 1340.0270
THR 1350.0210
PHE 1360.0209
THR 1370.0201
PHE 1380.0166
PHE 1390.0194
PRO 1400.0162
LEU 1410.0181
VAL 1420.0198
ILE 1430.0176
GLY 1440.0223
GLY 1450.0174
GLY 1460.0129
SER 1470.0163
ASP 1480.0153
ALA 1490.0190
MET 1500.0159
TYR 1510.0201
LEU 1520.0210
GLY 1530.0247
PHE 1540.0259
ALA 1550.0293
ALA 1560.0321
GLY 1570.0288
GLY 1580.0287
GLY 1590.0209
SER 1600.0173
ALA 1610.0126
GLY 1620.0162
GLY 1630.0166
GLU 1640.0183
ASN 1650.0137
HIS 1660.0135
VAL 1670.0100
ALA 1680.0097
PHE 1690.0077
GLY 1700.0074
PRO 1710.0055
GLY 1720.0091
PRO 1730.0136
GLY 1740.0127
VAL 1750.0065
ASP 1760.0071
LEU 1770.0044
THR 1780.0075
PHE 1790.0057
GLY 1800.0108
GLY 1810.0178
VAL 1820.0150
GLN 1830.0158
PHE 1840.0156
ALA 1850.0206
MET 1860.0235
VAL 1870.0346
ASN 1880.0366
ASN 1890.0501
GLY 1900.0519
PRO 1910.0392
GLY 1920.0318
PRO 1930.0127
GLY 1940.0167
GLU 1950.0152
SER 1960.0466
PHE 1970.0314
THR 1980.0383
ALA 1990.0318
GLN 2000.0215
PRO 2010.0246
ALA 2020.0098
ASP 2030.0167
MET 2040.0349
GLN 2050.0431
ALA 2060.0515
GLY 2070.0313
ILE 2080.0311
LYS 2090.0316
GLY 2100.0167
PRO 2110.0181
GLY 2120.0265
PRO 2130.0253
GLY 2140.0135
GLY 2150.0225
SER 2160.0311
ILE 2170.0336
GLN 2180.0335
VAL 2190.0328
ILE 2200.0411
ASN 2210.0384
GLY 2220.0375
SER 2230.0473
THR 2240.0508
ILE 2250.0576
GLY 2260.0768
THR 2270.0841
GLY 2280.0788
SER 2290.0717
LYS 2300.0531
LYS 2310.0405
THR 2320.0280
ILE 2330.0211
LEU 2340.0148
ILE 2350.0052
TYR 2360.0071
SER 2370.0080
ILE 2380.0072
ILE 2390.0092
GLY 2400.0090
VAL 2410.0053
LYS 2420.0041
LYS 2430.0037
GLY 2440.0029
THR 2450.0031
LEU 2460.0057
ALA 2470.0093
TRP 2480.0104
ALA 2490.0146
ARG 2500.0167
THR 2510.0218
GLY 2520.0242
PHE 2530.0164
SER 2540.0191
PRO 2550.0149
ALA 2560.0060
LYS 2570.0128
LYS 2580.0242
LEU 2590.0286
ASN 2600.0419
ALA 2610.0314
GLY 2620.0219
VAL 2630.0158
VAL 2640.0068
ARG 2650.0098
VAL 2660.0134
PHE 2670.0106
PHE 2680.0092
LEU 2690.0065
ASN 2700.0064
GLN 2710.0035
LYS 2720.0033
LYS 2730.0031
ALA 2740.0033
LYS 2750.0033
ASP 2760.0031
VAL 2770.0026
LEU 2780.0024
ARG 2790.0030
LYS 2800.0032
THR 2810.0028
SER 2820.0044
ARG 2830.0053
PRO 2840.0074
MET 2850.0094
VAL 2860.0139
ASP 2870.0084
LEU 2880.0034
THR 2890.0039
PHE 2900.0052
GLY 2910.0168
GLY 2920.0251

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.