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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 27  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0533
GLU 270.0119
PRO 280.0130
CYS 290.0106
VAL 300.0110
GLU 310.0101
VAL 320.0101
VAL 330.0091
PRO 340.0086
ASN 350.0059
ILE 360.0054
THR 370.0061
TYR 380.0068
GLN 390.0079
CYS 400.0084
MET 410.0088
GLU 420.0107
LEU 430.0119
ASN 440.0124
PHE 450.0113
TYR 460.0123
LYS 470.0110
ILE 480.0085
PRO 490.0089
ASP 500.0091
ASN 510.0095
LEU 520.0071
PRO 530.0051
PHE 540.0036
SER 550.0024
THR 560.0031
LYS 570.0028
ASN 580.0034
LEU 590.0037
ASP 600.0048
LEU 610.0059
SER 620.0062
PHE 630.0081
ASN 640.0092
PRO 650.0104
LEU 660.0096
ARG 670.0101
HIS 680.0104
LEU 690.0091
GLY 700.0104
SER 710.0103
TYR 720.0091
SER 730.0083
PHE 740.0062
PHE 750.0070
SER 760.0060
PHE 770.0039
PRO 780.0043
GLU 790.0030
LEU 800.0023
GLN 810.0031
VAL 820.0023
LEU 830.0019
ASP 840.0025
LEU 850.0039
SER 860.0040
ARG 870.0057
CYS 880.0069
GLU 890.0081
ILE 900.0079
GLN 910.0094
THR 920.0101
ILE 930.0090
GLU 940.0105
ASP 950.0109
GLY 960.0096
ALA 970.0085
TYR 980.0068
GLN 990.0083
SER 1000.0070
LEU 1010.0054
SER 1020.0068
HIS 1030.0055
LEU 1040.0043
SER 1050.0047
THR 1060.0032
LEU 1070.0025
ILE 1080.0016
LEU 1090.0029
THR 1100.0025
GLY 1110.0041
ASN 1120.0057
PRO 1130.0073
ILE 1140.0078
GLN 1150.0098
SER 1160.0106
LEU 1170.0095
ALA 1180.0107
LEU 1190.0110
GLY 1200.0105
ALA 1210.0089
PHE 1220.0078
SER 1230.0092
GLY 1240.0085
LEU 1250.0070
SER 1260.0083
SER 1270.0071
LEU 1280.0059
GLN 1290.0059
LYS 1300.0043
LEU 1310.0037
VAL 1320.0020
ALA 1330.0027
VAL 1340.0015
GLU 1350.0026
THR 1360.0040
ASN 1370.0060
LEU 1380.0062
ALA 1390.0074
SER 1400.0078
LEU 1410.0076
GLU 1420.0094
ASN 1430.0094
PHE 1440.0081
PRO 1450.0088
ILE 1460.0081
GLY 1470.0097
HIS 1480.0100
LEU 1490.0084
LYS 1500.0095
THR 1510.0085
LEU 1520.0067
LYS 1530.0064
GLU 1540.0049
LEU 1550.0043
ASN 1560.0028
VAL 1570.0033
ALA 1580.0019
HIS 1590.0023
ASN 1600.0041
LEU 1610.0057
ILE 1620.0063
GLN 1630.0070
SER 1640.0074
PHE 1650.0069
LYS 1660.0082
LEU 1670.0084
PRO 1680.0096
GLU 1690.0108
TYR 1700.0101
PHE 1710.0091
SER 1720.0106
ASN 1730.0106
LEU 1740.0090
THR 1750.0099
ASN 1760.0087
LEU 1770.0069
GLU 1780.0064
HIS 1790.0050
LEU 1800.0045
ASP 1810.0032
LEU 1820.0037
SER 1830.0024
SER 1840.0026
ASN 1850.0040
LYS 1860.0053
ILE 1870.0058
GLN 1880.0063
SER 1890.0067
ILE 1900.0067
TYR 1910.0078
CYS 1920.0084
THR 1930.0094
ASP 1940.0085
LEU 1950.0083
ARG 1960.0096
VAL 1970.0096
LEU 1980.0086
HIS 1990.0096
GLN 2000.0108
MET 2010.0101
PRO 2020.0099
LEU 2030.0099
LEU 2040.0084
ASN 2050.0073
LEU 2060.0059
SER 2070.0047
LEU 2080.0041
ASP 2090.0031
LEU 2100.0031
SER 2110.0023
LEU 2120.0030
ASN 2130.0039
PRO 2140.0048
MET 2150.0050
ASN 2160.0060
PHE 2170.0062
ILE 2180.0061
GLN 2190.0069
PRO 2200.0067
GLY 2210.0071
ALA 2220.0072
PHE 2230.0065
LYS 2240.0071
GLU 2250.0076
ILE 2260.0070
ARG 2270.0059
LEU 2280.0050
HIS 2290.0048
LYS 2300.0038
LEU 2310.0033
THR 2320.0028
LEU 2330.0028
ARG 2340.0028
ASN 2350.0034
ASN 2360.0036
PHE 2370.0044
ASP 2380.0051
SER 2390.0053
LEU 2400.0050
ASN 2410.0056
VAL 2420.0053
MET 2430.0045
LYS 2440.0048
THR 2450.0054
CYS 2460.0050
ILE 2470.0044
GLN 2480.0051
GLY 2490.0056
LEU 2500.0051
ALA 2510.0053
GLY 2520.0059
LEU 2530.0051
GLU 2540.0050
VAL 2550.0040
HIS 2560.0039
ARG 2570.0032
LEU 2580.0028
VAL 2590.0027
LEU 2600.0028
GLY 2610.0033
GLU 2620.0037
PHE 2630.0039
ARG 2640.0047
ASN 2650.0048
GLU 2660.0045
GLY 2670.0050
ASN 2680.0048
LEU 2690.0049
GLU 2700.0057
LYS 2710.0054
PHE 2720.0046
ASP 2730.0047
LYS 2740.0043
SER 2750.0044
ALA 2760.0042
LEU 2770.0037
GLU 2780.0040
GLY 2790.0042
LEU 2800.0037
CYS 2810.0038
ASN 2820.0046
LEU 2830.0042
THR 2840.0040
ILE 2850.0032
GLU 2860.0032
GLU 2870.0026
PHE 2880.0026
ARG 2890.0029
LEU 2900.0033
ALA 2910.0037
TYR 2920.0040
LEU 2930.0043
ASP 2940.0050
TYR 2950.0051
TYR 2960.0052
LEU 2970.0047
ASP 2980.0049
GLY 2990.0045
ILE 3000.0041
ILE 3010.0041
ASP 3020.0038
LEU 3030.0038
PHE 3040.0034
ASN 3050.0034
CYS 3060.0033
LEU 3070.0028
THR 3080.0028
ASN 3090.0025
VAL 3100.0025
SER 3110.0025
SER 3120.0028
PHE 3130.0030
SER 3140.0034
LEU 3150.0038
VAL 3160.0042
SER 3170.0044
VAL 3180.0044
THR 3190.0048
ILE 3200.0046
GLU 3210.0049
ARG 3220.0045
VAL 3230.0042
LYS 3240.0041
ASP 3250.0038
PHE 3260.0036
SER 3270.0036
TYR 3280.0034
ASN 3290.0031
PHE 3300.0030
GLY 3310.0027
TRP 3320.0025
GLN 3330.0023
HIS 3340.0028
LEU 3350.0033
GLU 3360.0038
LEU 3370.0040
VAL 3380.0044
ASN 3390.0049
CYS 3400.0049
LYS 3410.0052
PHE 3420.0048
GLY 3430.0050
GLN 3440.0046
PHE 3450.0042
PRO 3460.0039
THR 3470.0037
LEU 3480.0035
LYS 3490.0033
LEU 3500.0031
LYS 3510.0028
SER 3520.0025
LEU 3530.0029
LYS 3540.0027
ARG 3550.0032
LEU 3560.0037
THR 3570.0038
PHE 3580.0040
THR 3590.0044
SER 3600.0048
ASN 3610.0048
LYS 3620.0052
GLY 3630.0053
GLY 3640.0049
ASN 3650.0041
ALA 3660.0037
PHE 3670.0032
SER 3680.0032
GLU 3690.0029
VAL 3700.0030
ASP 3710.0029
LEU 3720.0030
PRO 3730.0027
SER 3740.0029
LEU 3750.0031
GLU 3760.0031
PHE 3770.0034
LEU 3780.0033
ASP 3790.0036
LEU 3800.0036
SER 3810.0038
ARG 3820.0040
ASN 3830.0040
GLY 3840.0038
LEU 3850.0034
SER 3860.0033
PHE 3870.0028
LYS 3880.0033
GLY 3890.0034
CYS 3900.0028
CYS 3910.0030
SER 3920.0028
GLN 3930.0027
SER 3940.0025
ASP 3950.0025
PHE 3960.0027
GLY 3970.0026
THR 3980.0027
ILE 3990.0029
SER 4000.0035
LEU 4010.0035
LYS 4020.0044
TYR 4030.0041
LEU 4040.0031
ASP 4050.0031
LEU 4060.0025
SER 4070.0025
PHE 4080.0027
ASN 4090.0026
GLY 4100.0029
VAL 4110.0030
ILE 4120.0027
THR 4130.0036
MET 4140.0039
SER 4150.0045
SER 4160.0045
ASN 4170.0051
PHE 4180.0043
LEU 4190.0048
GLY 4200.0045
LEU 4210.0045
GLU 4220.0057
GLN 4230.0059
LEU 4240.0052
GLU 4250.0063
HIS 4260.0054
LEU 4270.0040
ASP 4280.0033
PHE 4290.0022
GLN 4300.0022
HIS 4310.0015
SER 4320.0018
ASN 4330.0026
LEU 4340.0031
LYS 4350.0042
GLN 4360.0054
MET 4370.0057
SER 4380.0072
GLU 4390.0078
PHE 4400.0079
SER 4410.0077
VAL 4420.0060
PHE 4430.0062
LEU 4440.0075
SER 4450.0074
LEU 4460.0070
ARG 4470.0088
ASN 4480.0085
LEU 4490.0073
ILE 4500.0081
TYR 4510.0067
LEU 4520.0052
ASP 4530.0039
ILE 4540.0031
SER 4550.0024
HIS 4560.0017
THR 4570.0024
HIS 4580.0036
THR 4590.0046
ARG 4600.0060
VAL 4610.0069
ALA 4620.0090
PHE 4630.0096
ASN 4640.0101
GLY 4650.0101
ILE 4660.0082
PHE 4670.0083
ASN 4680.0100
GLY 4690.0102
LEU 4700.0094
SER 4710.0112
SER 4720.0111
LEU 4730.0093
GLU 4740.0096
VAL 4750.0078
LEU 4760.0062
LYS 4770.0044
MET 4780.0037
ALA 4790.0022
GLY 4800.0021
ASN 4810.0036
SER 4820.0057
PHE 4830.0075
GLN 4840.0096
GLU 4850.0106
ASN 4860.0087
PHE 4870.0097
LEU 4880.0087
PRO 4890.0108
ASP 4900.0117
ILE 4910.0109
PHE 4920.0105
THR 4930.0128
GLU 4940.0131
LEU 4950.0115
ARG 4960.0132
ASN 4970.0128
LEU 4980.0105
THR 4990.0103
PHE 5000.0081
LEU 5010.0064
ASP 5020.0040
LEU 5030.0035
SER 5040.0015
GLN 5050.0023
CYS 5060.0038
GLN 5070.0056
LEU 5080.0064
GLU 5090.0084
GLN 5100.0095
LEU 5110.0095
SER 5120.0119
PRO 5130.0123
THR 5140.0134
ALA 5150.0114
PHE 5160.0107
ASN 5170.0133
SER 5180.0144
LEU 5190.0124
SER 5200.0140
SER 5210.0135
LEU 5220.0110
GLN 5230.0104
VAL 5240.0079
LEU 5250.0059
ASN 5260.0034
MET 5270.0023
SER 5280.0010
HIS 5290.0032
ASN 5300.0043
ASN 5310.0069
PHE 5320.0074
PHE 5330.0095
SER 5340.0086
LEU 5350.0062
ASP 5360.0082
THR 5370.0077
PHE 5380.0110
PRO 5390.0109
TYR 5400.0095
LYS 5410.0117
CYS 5420.0136
LEU 5430.0118
ASN 5440.0138
SER 5450.0132
LEU 5460.0101
GLN 5470.0098
VAL 5480.0072
LEU 5490.0045
ASP 5500.0026
TYR 5510.0010
SER 5520.0038
LEU 5530.0058
ASN 5540.0057
HIS 5550.0083
ILE 5560.0075
MET 5570.0107
THR 5580.0104
SER 5590.0092
LYS 5600.0123
LYS 5610.0120
GLN 5620.0109
GLU 5630.0106
LEU 5640.0069
GLN 5650.0074
HIS 5660.0095
PHE 5670.0077
PRO 5680.0102
SER 5690.0110
SER 5700.0117
LEU 5710.0085
ALA 5720.0088
PHE 5730.0069
LEU 5740.0036
ASN 5750.0040
LEU 5760.0039
THR 5770.0071
GLN 5780.0089
ASN 5790.0082
ASP 5800.0112
PHE 5810.0111
ALA 5820.0142
CYS 5830.0153
THR 5840.0176
CYS 5850.0176
GLU 5860.0174
HIS 5870.0136
GLN 5880.0122
SER 5890.0098
PHE 5900.0078
LEU 5910.0088
GLN 5920.0071
TRP 5930.0039
ILE 5940.0044
LYS 5950.0060
ASP 5960.0028
GLN 5970.0027
ARG 5980.0061
GLN 5990.0076
LEU 6000.0057
LEU 6010.0058
VAL 6020.0084
GLU 6030.0103
VAL 6040.0109
GLU 6050.0136
ARG 6060.0119
MET 6070.0100
GLU 6080.0130
CYS 6090.0144
ALA 6100.0155
THR 6110.0175
PRO 6120.0201
SER 6130.0220
ASP 6140.0234
LYS 6150.0203
GLN 6160.0185
GLY 6170.0180
MET 6180.0175
PRO 6190.0144
VAL 6200.0118
LEU 6210.0112
SER 6220.0152
LEU 6230.0154
ASN 6240.0167
ILE 6250.0145
THR 6260.0173
CYS 6270.0201
GLU 10.0042
ALA 20.0025
ALA 30.0032
ALA 40.0027
LYS 50.0011
MET 60.0013
GLN 70.0018
ARG 80.0001
LEU 90.0017
VAL 100.0028
LEU 110.0019
LEU 120.0025
LEU 130.0037
ALA 140.0035
ILE 150.0031
SER 160.0038
LEU 170.0040
LEU 180.0035
LEU 190.0035
TYR 200.0041
GLN 210.0037
ASP 220.0033
LEU 230.0034
PRO 240.0033
VAL 250.0038
ARG 260.0005
SER 270.0010
GLU 280.0023
PHE 290.0025
GLU 300.0019
LEU 310.0030
ASP 320.0042
ARG 330.0039
ILE 340.0043
CYS 350.0060
GLY 360.0058
TYR 370.0055
GLY 380.0045
THR 390.0047
ALA 400.0047
ARG 410.0055
CYS 420.0070
ARG 430.0077
LYS 440.0094
LYS 450.0094
CYS 460.0085
ARG 470.0074
SER 480.0069
GLN 490.0056
GLU 500.0065
TYR 510.0078
ARG 520.0092
ILE 530.0094
GLY 540.0106
ARG 550.0108
CYS 560.0092
PRO 570.0095
ASN 580.0096
THR 590.0113
TYR 600.0100
ALA 610.0094
CYS 620.0083
CYS 630.0074
LEU 640.0066
ARG 650.0055
LYS 660.0051
TRP 670.0046
ASP 680.0031
GLU 690.0022
SER 700.0017
LEU 710.0034
LEU 720.0039
ASN 730.0033
ARG 740.0035
THR 750.0051
LYS 760.0066
PRO 770.0087
GLU 780.0077
ALA 790.0098
ALA 800.0126
ALA 810.0254
LYS 820.0280
LYS 830.0262
GLU 840.0288
MET 850.0290
ASN 860.0304
LEU 870.0250
SER 880.0268
VAL 890.0240
GLY 900.0271
LEU 910.0299
GLY 920.0337
GLY 930.0400
GLY 940.0406
SER 950.0376
ASN 960.0343
LEU 970.0302
SER 980.0315
VAL 990.0280
GLY 1000.0321
LEU 1010.0291
GLY 1020.0344
GLU 1030.0345
ILE 1040.0385
GLY 1050.0403
GLY 1060.0336
GLY 1070.0280
SER 1080.0217
LYS 1090.0203
LEU 1100.0159
LEU 1110.0177
ASP 1120.0169
ILE 1130.0191
ASN 1140.0207
LEU 1150.0225
GLY 1160.0294
ARG 1170.0314
GLY 1180.0354
GLY 1190.0336
GLY 1200.0320
SER 1210.0283
MET 1220.0249
VAL 1230.0216
ASP 1240.0210
LEU 1250.0184
THR 1260.0218
PHE 1270.0221
GLY 1280.0273
GLY 1290.0274
VAL 1300.0304
GLY 1310.0337
GLY 1320.0323
GLY 1330.0277
SER 1340.0249
THR 1350.0197
PHE 1360.0146
THR 1370.0110
PHE 1380.0057
PHE 1390.0051
PRO 1400.0040
LEU 1410.0052
VAL 1420.0098
ILE 1430.0099
GLY 1440.0141
GLY 1450.0175
GLY 1460.0191
SER 1470.0154
ASP 1480.0165
ALA 1490.0111
MET 1500.0091
TYR 1510.0048
LEU 1520.0074
GLY 1530.0090
PHE 1540.0130
ALA 1550.0164
ALA 1560.0220
GLY 1570.0230
GLY 1580.0277
GLY 1590.0257
SER 1600.0262
ALA 1610.0216
GLY 1620.0231
GLY 1630.0206
GLU 1640.0202
ASN 1650.0151
HIS 1660.0154
VAL 1670.0123
ALA 1680.0168
PHE 1690.0182
GLY 1700.0234
PRO 1710.0285
GLY 1720.0275
PRO 1730.0251
GLY 1740.0198
VAL 1750.0146
ASP 1760.0134
LEU 1770.0072
THR 1780.0087
PHE 1790.0077
GLY 1800.0114
GLY 1810.0104
VAL 1820.0043
GLN 1830.0083
PHE 1840.0083
ALA 1850.0149
MET 1860.0170
VAL 1870.0229
ASN 1880.0258
ASN 1890.0286
GLY 1900.0316
PRO 1910.0282
GLY 1920.0135
PRO 1930.0161
GLY 1940.0157
GLU 1950.0143
SER 1960.0219
PHE 1970.0201
THR 1980.0156
ALA 1990.0126
GLN 2000.0101
PRO 2010.0070
ALA 2020.0045
ASP 2030.0105
MET 2040.0150
GLN 2050.0151
ALA 2060.0146
GLY 2070.0134
ILE 2080.0128
LYS 2090.0167
GLY 2100.0210
PRO 2110.0171
GLY 2120.0221
PRO 2130.0270
GLY 2140.0242
GLY 2150.0163
SER 2160.0192
ILE 2170.0112
GLN 2180.0143
VAL 2190.0142
ILE 2200.0175
ASN 2210.0159
GLY 2220.0139
SER 2230.0201
THR 2240.0202
ILE 2250.0281
GLY 2260.0408
THR 2270.0479
GLY 2280.0517
SER 2290.0533
LYS 2300.0441
LYS 2310.0329
THR 2320.0279
ILE 2330.0217
LEU 2340.0156
ILE 2350.0116
TYR 2360.0070
SER 2370.0066
ILE 2380.0041
ILE 2390.0041
GLY 2400.0039
VAL 2410.0035
LYS 2420.0033
LYS 2430.0046
GLY 2440.0049
THR 2450.0039
LEU 2460.0062
ALA 2470.0061
TRP 2480.0078
ALA 2490.0092
ARG 2500.0124
THR 2510.0136
GLY 2520.0176
PHE 2530.0193
SER 2540.0231
PRO 2550.0260
ALA 2560.0278
LYS 2570.0322
LYS 2580.0401
LEU 2590.0415
ASN 2600.0498
ALA 2610.0404
GLY 2620.0337
VAL 2630.0274
VAL 2640.0186
ARG 2650.0151
VAL 2660.0128
PHE 2670.0107
PHE 2680.0090
LEU 2690.0073
ASN 2700.0055
GLN 2710.0025
LYS 2720.0020
LYS 2730.0028
ALA 2740.0039
LYS 2750.0043
ASP 2760.0073
VAL 2770.0087
LEU 2780.0082
ARG 2790.0093
LYS 2800.0116
THR 2810.0134
SER 2820.0122
ARG 2830.0120
PRO 2840.0120
MET 2850.0156
VAL 2860.0242
ASP 2870.0192
LEU 2880.0092
THR 2890.0168
PHE 2900.0166
GLY 2910.0353
GLY 2920.0471

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.