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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 28  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.1413
GLU 270.0032
PRO 280.0025
CYS 290.0028
VAL 300.0037
GLU 310.0045
VAL 320.0049
VAL 330.0055
PRO 340.0056
ASN 350.0053
ILE 360.0049
THR 370.0042
TYR 380.0034
GLN 390.0029
CYS 400.0020
MET 410.0020
GLU 420.0019
LEU 430.0012
ASN 440.0009
PHE 450.0006
TYR 460.0015
LYS 470.0018
ILE 480.0018
PRO 490.0022
ASP 500.0033
ASN 510.0036
LEU 520.0037
PRO 530.0046
PHE 540.0047
SER 550.0050
THR 560.0041
LYS 570.0038
ASN 580.0032
LEU 590.0024
ASP 600.0020
LEU 610.0010
SER 620.0014
PHE 630.0017
ASN 640.0010
PRO 650.0016
LEU 660.0014
ARG 670.0021
HIS 680.0025
LEU 690.0023
GLY 700.0031
SER 710.0035
TYR 720.0035
SER 730.0027
PHE 740.0027
PHE 750.0037
SER 760.0037
PHE 770.0035
PRO 780.0041
GLU 790.0041
LEU 800.0031
GLN 810.0029
VAL 820.0022
LEU 830.0014
ASP 840.0012
LEU 850.0006
SER 860.0014
ARG 870.0018
CYS 880.0013
GLU 890.0021
ILE 900.0019
GLN 910.0027
THR 920.0028
ILE 930.0024
GLU 940.0031
ASP 950.0034
GLY 960.0033
ALA 970.0026
TYR 980.0023
GLN 990.0032
SER 1000.0035
LEU 1010.0029
SER 1020.0032
HIS 1030.0031
LEU 1040.0022
SER 1050.0021
THR 1060.0015
LEU 1070.0008
ILE 1080.0008
LEU 1090.0008
THR 1100.0015
GLY 1110.0020
ASN 1120.0019
PRO 1130.0026
ILE 1140.0024
GLN 1150.0032
SER 1160.0032
LEU 1170.0026
ALA 1180.0030
LEU 1190.0029
GLY 1200.0029
ALA 1210.0023
PHE 1220.0018
SER 1230.0025
GLY 1240.0027
LEU 1250.0021
SER 1260.0026
SER 1270.0021
LEU 1280.0014
GLN 1290.0014
LYS 1300.0011
LEU 1310.0005
VAL 1320.0008
ALA 1330.0010
VAL 1340.0016
GLU 1350.0021
THR 1360.0019
ASN 1370.0023
LEU 1380.0019
ALA 1390.0021
SER 1400.0016
LEU 1410.0011
GLU 1420.0015
ASN 1430.0018
PHE 1440.0014
PRO 1450.0015
ILE 1460.0010
GLY 1470.0012
HIS 1480.0016
LEU 1490.0013
LYS 1500.0015
THR 1510.0016
LEU 1520.0009
LYS 1530.0011
GLU 1540.0010
LEU 1550.0007
ASN 1560.0010
VAL 1570.0012
ALA 1580.0016
HIS 1590.0020
ASN 1600.0019
LEU 1610.0022
ILE 1620.0014
GLN 1630.0015
SER 1640.0011
PHE 1650.0009
LYS 1660.0006
LEU 1670.0005
PRO 1680.0007
GLU 1690.0009
TYR 1700.0010
PHE 1710.0007
SER 1720.0009
ASN 1730.0012
LEU 1740.0009
THR 1750.0013
ASN 1760.0013
LEU 1770.0008
GLU 1780.0011
HIS 1790.0010
LEU 1800.0009
ASP 1810.0011
LEU 1820.0012
SER 1830.0015
SER 1840.0018
ASN 1850.0016
LYS 1860.0017
ILE 1870.0013
GLN 1880.0013
SER 1890.0012
ILE 1900.0010
TYR 1910.0009
CYS 1920.0008
THR 1930.0006
ASP 1940.0006
LEU 1950.0007
ARG 1960.0007
VAL 1970.0006
LEU 1980.0008
HIS 1990.0010
GLN 2000.0011
MET 2010.0012
PRO 2020.0013
LEU 2030.0014
LEU 2040.0011
ASN 2050.0012
LEU 2060.0010
SER 2070.0012
LEU 2080.0011
ASP 2090.0012
LEU 2100.0013
SER 2110.0015
LEU 2120.0016
ASN 2130.0015
PRO 2140.0015
MET 2150.0015
ASN 2160.0015
PHE 2170.0015
ILE 2180.0014
GLN 2190.0014
PRO 2200.0015
GLY 2210.0015
ALA 2220.0013
PHE 2230.0014
LYS 2240.0016
GLU 2250.0017
ILE 2260.0014
ARG 2270.0014
LEU 2280.0013
HIS 2290.0013
LYS 2300.0013
LEU 2310.0013
THR 2320.0013
LEU 2330.0014
ARG 2340.0015
ASN 2350.0016
ASN 2360.0016
PHE 2370.0017
ASP 2380.0019
SER 2390.0021
LEU 2400.0022
ASN 2410.0022
VAL 2420.0019
MET 2430.0019
LYS 2440.0020
THR 2450.0020
CYS 2460.0017
ILE 2470.0018
GLN 2480.0019
GLY 2490.0017
LEU 2500.0016
ALA 2510.0019
GLY 2520.0019
LEU 2530.0017
GLU 2540.0016
VAL 2550.0015
HIS 2560.0014
ARG 2570.0013
LEU 2580.0014
VAL 2590.0014
LEU 2600.0015
GLY 2610.0016
GLU 2620.0016
PHE 2630.0015
ARG 2640.0017
ASN 2650.0017
GLU 2660.0017
GLY 2670.0018
ASN 2680.0019
LEU 2690.0020
GLU 2700.0022
LYS 2710.0023
PHE 2720.0022
ASP 2730.0024
LYS 2740.0024
SER 2750.0024
ALA 2760.0022
LEU 2770.0021
GLU 2780.0023
GLY 2790.0022
LEU 2800.0020
CYS 2810.0022
ASN 2820.0021
LEU 2830.0019
THR 2840.0019
ILE 2850.0017
GLU 2860.0016
GLU 2870.0014
PHE 2880.0015
ARG 2890.0014
LEU 2900.0015
ALA 2910.0014
TYR 2920.0015
LEU 2930.0017
ASP 2940.0019
TYR 2950.0021
TYR 2960.0022
LEU 2970.0021
ASP 2980.0023
GLY 2990.0022
ILE 3000.0020
ILE 3010.0023
ASP 3020.0023
LEU 3030.0022
PHE 3040.0020
ASN 3050.0021
CYS 3060.0021
LEU 3070.0018
THR 3080.0019
ASN 3090.0018
VAL 3100.0016
SER 3110.0014
SER 3120.0013
PHE 3130.0013
SER 3140.0012
LEU 3150.0013
VAL 3160.0013
SER 3170.0015
VAL 3180.0016
THR 3190.0018
ILE 3200.0019
GLU 3210.0020
ARG 3220.0020
VAL 3230.0017
LYS 3240.0018
ASP 3250.0018
PHE 3260.0015
SER 3270.0016
TYR 3280.0018
ASN 3290.0017
PHE 3300.0016
GLY 3310.0016
TRP 3320.0014
GLN 3330.0012
HIS 3340.0011
LEU 3350.0011
GLU 3360.0010
LEU 3370.0010
VAL 3380.0010
ASN 3390.0012
CYS 3400.0013
LYS 3410.0015
PHE 3420.0015
GLY 3430.0017
GLN 3440.0015
PHE 3450.0012
PRO 3460.0012
THR 3470.0012
LEU 3480.0011
LYS 3490.0011
LEU 3500.0012
LYS 3510.0012
SER 3520.0012
LEU 3530.0010
LYS 3540.0009
ARG 3550.0008
LEU 3560.0007
THR 3570.0006
PHE 3580.0007
THR 3590.0007
SER 3600.0009
ASN 3610.0011
LYS 3620.0013
GLY 3630.0015
GLY 3640.0014
ASN 3650.0011
ALA 3660.0011
PHE 3670.0009
SER 3680.0009
GLU 3690.0008
VAL 3700.0007
ASP 3710.0007
LEU 3720.0008
PRO 3730.0008
SER 3740.0009
LEU 3750.0007
GLU 3760.0007
PHE 3770.0006
LEU 3780.0005
ASP 3790.0006
LEU 3800.0006
SER 3810.0006
ARG 3820.0008
ASN 3830.0008
GLY 3840.0010
LEU 3850.0009
SER 3860.0010
PHE 3870.0009
LYS 3880.0010
GLY 3890.0010
CYS 3900.0010
CYS 3910.0010
SER 3920.0010
GLN 3930.0009
SER 3940.0008
ASP 3950.0008
PHE 3960.0007
GLY 3970.0008
THR 3980.0008
ILE 3990.0009
SER 4000.0009
LEU 4010.0009
LYS 4020.0009
TYR 4030.0008
LEU 4040.0008
ASP 4050.0008
LEU 4060.0008
SER 4070.0008
PHE 4080.0009
ASN 4090.0008
GLY 4100.0009
VAL 4110.0009
ILE 4120.0010
THR 4130.0011
MET 4140.0011
SER 4150.0012
SER 4160.0012
ASN 4170.0013
PHE 4180.0012
LEU 4190.0012
GLY 4200.0012
LEU 4210.0011
GLU 4220.0012
GLN 4230.0012
LEU 4240.0012
GLU 4250.0012
HIS 4260.0011
LEU 4270.0011
ASP 4280.0010
PHE 4290.0010
GLN 4300.0010
HIS 4310.0010
SER 4320.0009
ASN 4330.0010
LEU 4340.0010
LYS 4350.0011
GLN 4360.0011
MET 4370.0011
SER 4380.0011
GLU 4390.0012
PHE 4400.0013
SER 4410.0013
VAL 4420.0013
PHE 4430.0013
LEU 4440.0014
SER 4450.0015
LEU 4460.0014
ARG 4470.0014
ASN 4480.0014
LEU 4490.0014
ILE 4500.0014
TYR 4510.0014
LEU 4520.0013
ASP 4530.0012
ILE 4540.0011
SER 4550.0009
HIS 4560.0009
THR 4570.0011
HIS 4580.0009
THR 4590.0009
ARG 4600.0007
VAL 4610.0007
ALA 4620.0007
PHE 4630.0009
ASN 4640.0010
GLY 4650.0012
ILE 4660.0012
PHE 4670.0012
ASN 4680.0014
GLY 4690.0016
LEU 4700.0015
SER 4710.0017
SER 4720.0017
LEU 4730.0016
GLU 4740.0016
VAL 4750.0016
LEU 4760.0014
LYS 4770.0011
MET 4780.0009
ALA 4790.0008
GLY 4800.0007
ASN 4810.0007
SER 4820.0006
PHE 4830.0004
GLN 4840.0004
GLU 4850.0006
ASN 4860.0006
PHE 4870.0006
LEU 4880.0007
PRO 4890.0008
ASP 4900.0012
ILE 4910.0011
PHE 4920.0013
THR 4930.0015
GLU 4940.0017
LEU 4950.0017
ARG 4960.0020
ASN 4970.0021
LEU 4980.0018
THR 4990.0020
PHE 5000.0017
LEU 5010.0014
ASP 5020.0010
LEU 5030.0007
SER 5040.0005
GLN 5050.0005
CYS 5060.0005
GLN 5070.0008
LEU 5080.0007
GLU 5090.0012
GLN 5100.0013
LEU 5110.0014
SER 5120.0014
PRO 5130.0020
THR 5140.0019
ALA 5150.0015
PHE 5160.0019
ASN 5170.0022
SER 5180.0023
LEU 5190.0022
SER 5200.0027
SER 5210.0026
LEU 5220.0023
GLN 5230.0024
VAL 5240.0019
LEU 5250.0015
ASN 5260.0010
MET 5270.0008
SER 5280.0005
HIS 5290.0009
ASN 5300.0010
ASN 5310.0016
PHE 5320.0020
PHE 5330.0027
SER 5340.0029
LEU 5350.0028
ASP 5360.0030
THR 5370.0031
PHE 5380.0033
PRO 5390.0026
TYR 5400.0028
LYS 5410.0036
CYS 5420.0032
LEU 5430.0030
ASN 5440.0035
SER 5450.0033
LEU 5460.0028
GLN 5470.0029
VAL 5480.0022
LEU 5490.0018
ASP 5500.0012
TYR 5510.0012
SER 5520.0010
LEU 5530.0013
ASN 5540.0016
HIS 5550.0024
ILE 5560.0026
MET 5570.0037
THR 5580.0040
SER 5590.0040
LYS 5600.0043
LYS 5610.0043
GLN 5620.0048
GLU 5630.0046
LEU 5640.0043
GLN 5650.0047
HIS 5660.0043
PHE 5670.0036
PRO 5680.0038
SER 5690.0042
SER 5700.0038
LEU 5710.0033
ALA 5720.0034
PHE 5730.0025
LEU 5740.0022
ASN 5750.0015
LEU 5760.0018
THR 5770.0014
GLN 5780.0020
ASN 5790.0024
ASP 5800.0034
PHE 5810.0038
ALA 5820.0050
CYS 5830.0054
THR 5840.0064
CYS 5850.0071
GLU 5860.0070
HIS 5870.0059
GLN 5880.0062
SER 5890.0061
PHE 5900.0050
LEU 5910.0050
GLN 5920.0056
TRP 5930.0051
ILE 5940.0042
LYS 5950.0047
ASP 5960.0052
GLN 5970.0043
ARG 5980.0037
GLN 5990.0038
LEU 6000.0033
LEU 6010.0025
VAL 6020.0018
GLU 6030.0014
VAL 6040.0023
GLU 6050.0022
ARG 6060.0019
MET 6070.0025
GLU 6080.0033
CYS 6090.0043
ALA 6100.0045
THR 6110.0054
PRO 6120.0061
SER 6130.0063
ASP 6140.0064
LYS 6150.0055
GLN 6160.0050
GLY 6170.0043
MET 6180.0044
PRO 6190.0036
VAL 6200.0040
LEU 6210.0040
SER 6220.0045
LEU 6230.0053
ASN 6240.0065
ILE 6250.0069
THR 6260.0080
CYS 6270.0093
GLU 10.0024
ALA 20.0014
ALA 30.0018
ALA 40.0020
LYS 50.0016
MET 60.0016
GLN 70.0017
ARG 80.0015
LEU 90.0018
VAL 100.0019
LEU 110.0013
LEU 120.0016
LEU 130.0022
ALA 140.0018
ILE 150.0013
SER 160.0018
LEU 170.0019
LEU 180.0014
LEU 190.0014
TYR 200.0018
GLN 210.0016
ASP 220.0012
LEU 230.0012
PRO 240.0013
VAL 250.0017
ARG 260.0014
SER 270.0013
GLU 280.0014
PHE 290.0015
GLU 300.0014
LEU 310.0011
ASP 320.0012
ARG 330.0013
ILE 340.0012
CYS 350.0012
GLY 360.0011
TYR 370.0009
GLY 380.0012
THR 390.0013
ALA 400.0015
ARG 410.0014
CYS 420.0014
ARG 430.0014
LYS 440.0015
LYS 450.0016
CYS 460.0018
ARG 470.0017
SER 480.0018
GLN 490.0018
GLU 500.0019
TYR 510.0021
ARG 520.0020
ILE 530.0020
GLY 540.0019
ARG 550.0017
CYS 560.0016
PRO 570.0015
ASN 580.0014
THR 590.0016
TYR 600.0016
ALA 610.0017
CYS 620.0017
CYS 630.0017
LEU 640.0018
ARG 650.0018
LYS 660.0026
TRP 670.0026
ASP 680.0022
GLU 690.0021
SER 700.0019
LEU 710.0025
LEU 720.0028
ASN 730.0024
ARG 740.0027
THR 750.0033
LYS 760.0041
PRO 770.0048
GLU 780.0045
ALA 790.0052
ALA 800.0061
ALA 810.0059
LYS 820.0069
LYS 830.0063
GLU 840.0055
MET 850.0060
ASN 860.0044
LEU 870.0059
SER 880.0057
VAL 890.0082
GLY 900.0086
LEU 910.0122
GLY 920.0138
GLY 930.0161
GLY 940.0137
SER 950.0131
ASN 960.0100
LEU 970.0103
SER 980.0080
VAL 990.0090
GLY 1000.0080
LEU 1010.0108
GLY 1020.0142
GLU 1030.0167
ILE 1040.0220
GLY 1050.0258
GLY 1060.0278
GLY 1070.0239
SER 1080.0188
LYS 1090.0155
LEU 1100.0127
LEU 1110.0117
ASP 1120.0130
ILE 1130.0119
ASN 1140.0141
LEU 1150.0138
GLY 1160.0147
ARG 1170.0172
GLY 1180.0167
GLY 1190.0178
GLY 1200.0170
SER 1210.0140
MET 1220.0108
VAL 1230.0091
ASP 1240.0056
LEU 1250.0054
THR 1260.0037
PHE 1270.0052
GLY 1280.0047
GLY 1290.0069
VAL 1300.0090
GLY 1310.0100
GLY 1320.0114
GLY 1330.0118
SER 1340.0114
THR 1350.0112
PHE 1360.0098
THR 1370.0094
PHE 1380.0090
PHE 1390.0091
PRO 1400.0088
LEU 1410.0093
VAL 1420.0093
ILE 1430.0118
GLY 1440.0140
GLY 1450.0158
GLY 1460.0185
SER 1470.0176
ASP 1480.0149
ALA 1490.0140
MET 1500.0110
TYR 1510.0121
LEU 1520.0110
GLY 1530.0120
PHE 1540.0114
ALA 1550.0127
ALA 1560.0136
GLY 1570.0144
GLY 1580.0151
GLY 1590.0143
SER 1600.0135
ALA 1610.0130
GLY 1620.0114
GLY 1630.0089
GLU 1640.0066
ASN 1650.0062
HIS 1660.0041
VAL 1670.0062
ALA 1680.0062
PHE 1690.0093
GLY 1700.0103
PRO 1710.0185
GLY 1720.0165
PRO 1730.0181
GLY 1740.0133
VAL 1750.0113
ASP 1760.0071
LEU 1770.0080
THR 1780.0067
PHE 1790.0088
GLY 1800.0096
GLY 1810.0103
VAL 1820.0114
GLN 1830.0092
PHE 1840.0110
ALA 1850.0105
MET 1860.0139
VAL 1870.0195
ASN 1880.0264
ASN 1890.0359
GLY 1900.0420
PRO 1910.0587
GLY 1920.0661
PRO 1930.0541
GLY 1940.0322
GLU 1950.0288
SER 1960.0200
PHE 1970.0298
THR 1980.0339
ALA 1990.0400
GLN 2000.0533
PRO 2010.0368
ALA 2020.0332
ASP 2030.0415
MET 2040.0326
GLN 2050.0248
ALA 2060.0579
GLY 2070.0679
ILE 2080.0563
LYS 2090.0825
GLY 2100.0665
PRO 2110.0745
GLY 2120.1214
PRO 2130.1413
GLY 2140.0891
GLY 2150.0568
SER 2160.0658
ILE 2170.0500
GLN 2180.0518
VAL 2190.0358
ILE 2200.0356
ASN 2210.0254
GLY 2220.0154
SER 2230.0099
THR 2240.0215
ILE 2250.0248
GLY 2260.0369
THR 2270.0390
GLY 2280.0347
SER 2290.0303
LYS 2300.0236
LYS 2310.0227
THR 2320.0174
ILE 2330.0147
LEU 2340.0095
ILE 2350.0072
TYR 2360.0038
SER 2370.0029
ILE 2380.0023
ILE 2390.0013
GLY 2400.0019
VAL 2410.0011
LYS 2420.0010
LYS 2430.0010
GLY 2440.0009
THR 2450.0010
LEU 2460.0004
ALA 2470.0017
TRP 2480.0030
ALA 2490.0032
ARG 2500.0046
THR 2510.0049
GLY 2520.0066
PHE 2530.0054
SER 2540.0074
PRO 2550.0065
ALA 2560.0037
LYS 2570.0046
LYS 2580.0072
LEU 2590.0084
ASN 2600.0117
ALA 2610.0097
GLY 2620.0080
VAL 2630.0072
VAL 2640.0081
ARG 2650.0070
VAL 2660.0071
PHE 2670.0066
PHE 2680.0065
LEU 2690.0062
ASN 2700.0068
GLN 2710.0038
LYS 2720.0041
LYS 2730.0049
ALA 2740.0041
LYS 2750.0032
ASP 2760.0036
VAL 2770.0039
LEU 2780.0028
ARG 2790.0019
LYS 2800.0029
THR 2810.0034
SER 2820.0026
ARG 2830.0039
PRO 2840.0041
MET 2850.0058
VAL 2860.0047
ASP 2870.0024
LEU 2880.0040
THR 2890.0031
PHE 2900.0024
GLY 2910.0071
GLY 2920.0078

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.