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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 29  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0921
GLU 270.0018
PRO 280.0017
CYS 290.0016
VAL 300.0018
GLU 310.0019
VAL 320.0019
VAL 330.0020
PRO 340.0020
ASN 350.0018
ILE 360.0016
THR 370.0016
TYR 380.0015
GLN 390.0015
CYS 400.0013
MET 410.0012
GLU 420.0012
LEU 430.0012
ASN 440.0010
PHE 450.0010
TYR 460.0008
LYS 470.0008
ILE 480.0009
PRO 490.0012
ASP 500.0013
ASN 510.0015
LEU 520.0015
PRO 530.0016
PHE 540.0014
SER 550.0014
THR 560.0014
LYS 570.0012
ASN 580.0012
LEU 590.0011
ASP 600.0011
LEU 610.0010
SER 620.0010
PHE 630.0009
ASN 640.0008
PRO 650.0006
LEU 660.0006
ARG 670.0005
HIS 680.0005
LEU 690.0005
GLY 700.0005
SER 710.0006
TYR 720.0007
SER 730.0007
PHE 740.0008
PHE 750.0009
SER 760.0010
PHE 770.0010
PRO 780.0009
GLU 790.0010
LEU 800.0009
GLN 810.0009
VAL 820.0009
LEU 830.0008
ASP 840.0008
LEU 850.0007
SER 860.0008
ARG 870.0007
CYS 880.0007
GLU 890.0006
ILE 900.0005
GLN 910.0005
THR 920.0004
ILE 930.0004
GLU 940.0004
ASP 950.0004
GLY 960.0005
ALA 970.0005
TYR 980.0005
GLN 990.0005
SER 1000.0006
LEU 1010.0006
SER 1020.0005
HIS 1030.0007
LEU 1040.0006
SER 1050.0007
THR 1060.0007
LEU 1070.0006
ILE 1080.0007
LEU 1090.0006
THR 1100.0007
GLY 1110.0007
ASN 1120.0006
PRO 1130.0006
ILE 1140.0005
GLN 1150.0006
SER 1160.0005
LEU 1170.0005
ALA 1180.0005
LEU 1190.0005
GLY 1200.0005
ALA 1210.0005
PHE 1220.0005
SER 1230.0004
GLY 1240.0004
LEU 1250.0005
SER 1260.0005
SER 1270.0005
LEU 1280.0005
GLN 1290.0006
LYS 1300.0006
LEU 1310.0006
VAL 1320.0006
ALA 1330.0006
VAL 1340.0007
GLU 1350.0007
THR 1360.0006
ASN 1370.0009
LEU 1380.0009
ALA 1390.0009
SER 1400.0009
LEU 1410.0008
GLU 1420.0008
ASN 1430.0009
PHE 1440.0008
PRO 1450.0007
ILE 1460.0007
GLY 1470.0007
HIS 1480.0006
LEU 1490.0006
LYS 1500.0006
THR 1510.0006
LEU 1520.0006
LYS 1530.0006
GLU 1540.0006
LEU 1550.0007
ASN 1560.0007
VAL 1570.0007
ALA 1580.0008
HIS 1590.0009
ASN 1600.0009
LEU 1610.0010
ILE 1620.0010
GLN 1630.0010
SER 1640.0010
PHE 1650.0008
LYS 1660.0009
LEU 1670.0008
PRO 1680.0008
GLU 1690.0008
TYR 1700.0008
PHE 1710.0007
SER 1720.0007
ASN 1730.0007
LEU 1740.0007
THR 1750.0006
ASN 1760.0006
LEU 1770.0007
GLU 1780.0006
HIS 1790.0006
LEU 1800.0007
ASP 1810.0007
LEU 1820.0008
SER 1830.0009
SER 1840.0010
ASN 1850.0010
LYS 1860.0010
ILE 1870.0009
GLN 1880.0009
SER 1890.0008
ILE 1900.0007
TYR 1910.0009
CYS 1920.0008
THR 1930.0009
ASP 1940.0009
LEU 1950.0007
ARG 1960.0009
VAL 1970.0008
LEU 1980.0007
HIS 1990.0007
GLN 2000.0008
MET 2010.0007
PRO 2020.0007
LEU 2030.0007
LEU 2040.0006
ASN 2050.0005
LEU 2060.0006
SER 2070.0005
LEU 2080.0006
ASP 2090.0007
LEU 2100.0007
SER 2110.0008
LEU 2120.0009
ASN 2130.0009
PRO 2140.0008
MET 2150.0007
ASN 2160.0006
PHE 2170.0005
ILE 2180.0005
GLN 2190.0007
PRO 2200.0006
GLY 2210.0007
ALA 2220.0007
PHE 2230.0006
LYS 2240.0007
GLU 2250.0007
ILE 2260.0006
ARG 2270.0006
LEU 2280.0005
HIS 2290.0004
LYS 2300.0003
LEU 2310.0004
THR 2320.0005
LEU 2330.0005
ARG 2340.0007
ASN 2350.0009
ASN 2360.0006
PHE 2370.0006
ASP 2380.0007
SER 2390.0006
LEU 2400.0006
ASN 2410.0004
VAL 2420.0002
MET 2430.0003
LYS 2440.0003
THR 2450.0002
CYS 2460.0001
ILE 2470.0001
GLN 2480.0003
GLY 2490.0004
LEU 2500.0003
ALA 2510.0005
GLY 2520.0006
LEU 2530.0005
GLU 2540.0005
VAL 2550.0003
HIS 2560.0002
ARG 2570.0001
LEU 2580.0002
VAL 2590.0005
LEU 2600.0006
GLY 2610.0009
GLU 2620.0012
PHE 2630.0015
ARG 2640.0018
ASN 2650.0019
GLU 2660.0016
GLY 2670.0015
ASN 2680.0013
LEU 2690.0011
GLU 2700.0013
LYS 2710.0013
PHE 2720.0013
ASP 2730.0013
LYS 2740.0014
SER 2750.0011
ALA 2760.0009
LEU 2770.0008
GLU 2780.0009
GLY 2790.0006
LEU 2800.0006
CYS 2810.0009
ASN 2820.0007
LEU 2830.0006
THR 2840.0006
ILE 2850.0004
GLU 2860.0004
GLU 2870.0004
PHE 2880.0005
ARG 2890.0007
LEU 2900.0010
ALA 2910.0012
TYR 2920.0015
LEU 2930.0015
ASP 2940.0018
TYR 2950.0018
TYR 2960.0020
LEU 2970.0020
ASP 2980.0023
GLY 2990.0021
ILE 3000.0018
ILE 3010.0020
ASP 3020.0017
LEU 3030.0014
PHE 3040.0013
ASN 3050.0014
CYS 3060.0011
LEU 3070.0010
THR 3080.0012
ASN 3090.0011
VAL 3100.0008
SER 3110.0007
SER 3120.0007
PHE 3130.0009
SER 3140.0010
LEU 3150.0013
VAL 3160.0015
SER 3170.0019
VAL 3180.0019
THR 3190.0022
ILE 3200.0022
GLU 3210.0025
ARG 3220.0025
VAL 3230.0023
LYS 3240.0025
ASP 3250.0022
PHE 3260.0020
SER 3270.0022
TYR 3280.0021
ASN 3290.0019
PHE 3300.0016
GLY 3310.0014
TRP 3320.0011
GLN 3330.0010
HIS 3340.0009
LEU 3350.0012
GLU 3360.0013
LEU 3370.0017
VAL 3380.0018
ASN 3390.0022
CYS 3400.0022
LYS 3410.0025
PHE 3420.0025
GLY 3430.0028
GLN 3440.0028
PHE 3450.0025
PRO 3460.0022
THR 3470.0024
LEU 3480.0020
LYS 3490.0021
LEU 3500.0018
LYS 3510.0018
SER 3520.0015
LEU 3530.0014
LYS 3540.0012
ARG 3550.0011
LEU 3560.0014
THR 3570.0015
PHE 3580.0019
THR 3590.0020
SER 3600.0024
ASN 3610.0025
LYS 3620.0027
GLY 3630.0029
GLY 3640.0029
ASN 3650.0026
ALA 3660.0026
PHE 3670.0026
SER 3680.0026
GLU 3690.0025
VAL 3700.0021
ASP 3710.0020
LEU 3720.0019
PRO 3730.0020
SER 3740.0016
LEU 3750.0015
GLU 3760.0013
PHE 3770.0012
LEU 3780.0015
ASP 3790.0017
LEU 3800.0021
SER 3810.0022
ARG 3820.0024
ASN 3830.0025
GLY 3840.0025
LEU 3850.0024
SER 3860.0024
PHE 3870.0026
LYS 3880.0030
GLY 3890.0030
CYS 3900.0027
CYS 3910.0024
SER 3920.0026
GLN 3930.0024
SER 3940.0027
ASP 3950.0025
PHE 3960.0022
GLY 3970.0023
THR 3980.0020
ILE 3990.0021
SER 4000.0017
LEU 4010.0016
LYS 4020.0013
TYR 4030.0013
LEU 4040.0017
ASP 4050.0018
LEU 4060.0022
SER 4070.0025
PHE 4080.0025
ASN 4090.0025
GLY 4100.0024
VAL 4110.0024
ILE 4120.0028
THR 4130.0031
MET 4140.0030
SER 4150.0032
SER 4160.0030
ASN 4170.0028
PHE 4180.0025
LEU 4190.0027
GLY 4200.0026
LEU 4210.0022
GLU 4220.0021
GLN 4230.0017
LEU 4240.0015
GLU 4250.0012
HIS 4260.0012
LEU 4270.0018
ASP 4280.0020
PHE 4290.0023
GLN 4300.0024
HIS 4310.0028
SER 4320.0027
ASN 4330.0029
LEU 4340.0030
LYS 4350.0033
GLN 4360.0035
MET 4370.0034
SER 4380.0037
GLU 4390.0040
PHE 4400.0036
SER 4410.0031
VAL 4420.0029
PHE 4430.0024
LEU 4440.0026
SER 4450.0025
LEU 4460.0020
ARG 4470.0018
ASN 4480.0015
LEU 4490.0013
ILE 4500.0009
TYR 4510.0011
LEU 4520.0017
ASP 4530.0020
ILE 4540.0024
SER 4550.0026
HIS 4560.0030
THR 4570.0031
HIS 4580.0032
THR 4590.0034
ARG 4600.0036
VAL 4610.0038
ALA 4620.0040
PHE 4630.0036
ASN 4640.0030
GLY 4650.0029
ILE 4660.0029
PHE 4670.0022
ASN 4680.0023
GLY 4690.0022
LEU 4700.0016
SER 4710.0014
SER 4720.0010
LEU 4730.0009
GLU 4740.0005
VAL 4750.0009
LEU 4760.0014
LYS 4770.0020
MET 4780.0025
ALA 4790.0030
GLY 4800.0036
ASN 4810.0036
SER 4820.0042
PHE 4830.0039
GLN 4840.0044
GLU 4850.0047
ASN 4860.0044
PHE 4870.0037
LEU 4880.0030
PRO 4890.0026
ASP 4900.0018
ILE 4910.0020
PHE 4920.0012
THR 4930.0009
GLU 4940.0011
LEU 4950.0006
ARG 4960.0005
ASN 4970.0005
LEU 4980.0004
THR 4990.0010
PHE 5000.0013
LEU 5010.0017
ASP 5020.0023
LEU 5030.0029
SER 5040.0036
GLN 5050.0043
CYS 5060.0040
GLN 5070.0050
LEU 5080.0043
GLU 5090.0047
GLN 5100.0038
LEU 5110.0029
SER 5120.0026
PRO 5130.0024
THR 5140.0015
ALA 5150.0017
PHE 5160.0015
ASN 5170.0013
SER 5180.0007
LEU 5190.0010
SER 5200.0017
SER 5210.0016
LEU 5220.0016
GLN 5230.0021
VAL 5240.0023
LEU 5250.0025
ASN 5260.0031
MET 5270.0036
SER 5280.0044
HIS 5290.0052
ASN 5300.0050
ASN 5310.0057
PHE 5320.0055
PHE 5330.0063
SER 5340.0060
LEU 5350.0054
ASP 5360.0048
THR 5370.0046
PHE 5380.0040
PRO 5390.0030
TYR 5400.0033
LYS 5410.0036
CYS 5420.0028
LEU 5430.0027
ASN 5440.0032
SER 5450.0030
LEU 5460.0031
GLN 5470.0034
VAL 5480.0035
LEU 5490.0037
ASP 5500.0041
TYR 5510.0048
SER 5520.0053
LEU 5530.0060
ASN 5540.0059
HIS 5550.0066
ILE 5560.0063
MET 5570.0077
THR 5580.0075
SER 5590.0069
LYS 5600.0069
LYS 5610.0062
GLN 5620.0068
GLU 5630.0060
LEU 5640.0063
GLN 5650.0064
HIS 5660.0053
PHE 5670.0049
PRO 5680.0046
SER 5690.0052
SER 5700.0045
LEU 5710.0045
ALA 5720.0047
PHE 5730.0046
LEU 5740.0050
ASN 5750.0051
LEU 5760.0059
THR 5770.0061
GLN 5780.0069
ASN 5790.0069
ASP 5800.0079
PHE 5810.0081
ALA 5820.0095
CYS 5830.0101
THR 5840.0111
CYS 5850.0117
GLU 5860.0112
HIS 5870.0098
GLN 5880.0103
SER 5890.0095
PHE 5900.0084
LEU 5910.0090
GLN 5920.0094
TRP 5930.0083
ILE 5940.0079
LYS 5950.0088
ASP 5960.0086
GLN 5970.0075
ARG 5980.0075
GLN 5990.0069
LEU 6000.0060
LEU 6010.0062
VAL 6020.0056
GLU 6030.0063
VAL 6040.0073
GLU 6050.0077
ARG 6060.0073
MET 6070.0074
GLU 6080.0083
CYS 6090.0092
ALA 6100.0094
THR 6110.0101
PRO 6120.0108
SER 6130.0109
ASP 6140.0109
LYS 6150.0098
GLN 6160.0089
GLY 6170.0095
MET 6180.0096
PRO 6190.0087
VAL 6200.0088
LEU 6210.0087
SER 6220.0096
LEU 6230.0105
ASN 6240.0117
ILE 6250.0118
THR 6260.0132
CYS 6270.0149
GLU 10.0038
ALA 20.0033
ALA 30.0016
ALA 40.0017
LYS 50.0019
MET 60.0012
GLN 70.0007
ARG 80.0012
LEU 90.0004
VAL 100.0019
LEU 110.0022
LEU 120.0016
LEU 130.0018
ALA 140.0028
ILE 150.0028
SER 160.0023
LEU 170.0027
LEU 180.0029
LEU 190.0024
TYR 200.0023
GLN 210.0025
ASP 220.0024
LEU 230.0019
PRO 240.0018
VAL 250.0018
ARG 260.0015
SER 270.0012
GLU 280.0009
PHE 290.0008
GLU 300.0006
LEU 310.0005
ASP 320.0003
ARG 330.0003
ILE 340.0004
CYS 350.0006
GLY 360.0009
TYR 370.0010
GLY 380.0007
THR 390.0006
ALA 400.0005
ARG 410.0004
CYS 420.0004
ARG 430.0005
LYS 440.0006
LYS 450.0007
CYS 460.0006
ARG 470.0006
SER 480.0006
GLN 490.0006
GLU 500.0006
TYR 510.0007
ARG 520.0008
ILE 530.0008
GLY 540.0009
ARG 550.0008
CYS 560.0005
PRO 570.0004
ASN 580.0003
THR 590.0006
TYR 600.0006
ALA 610.0006
CYS 620.0006
CYS 630.0006
LEU 640.0006
ARG 650.0006
LYS 660.0007
TRP 670.0008
ASP 680.0008
GLU 690.0008
SER 700.0008
LEU 710.0009
LEU 720.0009
ASN 730.0008
ARG 740.0009
THR 750.0011
LYS 760.0010
PRO 770.0011
GLU 780.0010
ALA 790.0012
ALA 800.0013
ALA 810.0034
LYS 820.0043
LYS 830.0049
GLU 840.0048
MET 850.0059
ASN 860.0057
LEU 870.0049
SER 880.0058
VAL 890.0059
GLY 900.0072
LEU 910.0084
GLY 920.0106
GLY 930.0118
GLY 940.0114
SER 950.0093
ASN 960.0074
LEU 970.0059
SER 980.0059
VAL 990.0048
GLY 1000.0056
LEU 1010.0055
GLY 1020.0060
GLU 1030.0058
ILE 1040.0052
GLY 1050.0049
GLY 1060.0032
GLY 1070.0013
SER 1080.0016
LYS 1090.0014
LEU 1100.0036
LEU 1110.0014
ASP 1120.0016
ILE 1130.0019
ASN 1140.0016
LEU 1150.0034
GLY 1160.0052
ARG 1170.0087
GLY 1180.0110
GLY 1190.0127
GLY 1200.0129
SER 1210.0104
MET 1220.0097
VAL 1230.0069
ASP 1240.0065
LEU 1250.0044
THR 1260.0057
PHE 1270.0064
GLY 1280.0092
GLY 1290.0104
VAL 1300.0125
GLY 1310.0153
GLY 1320.0149
GLY 1330.0124
SER 1340.0114
THR 1350.0087
PHE 1360.0081
THR 1370.0090
PHE 1380.0079
PHE 1390.0099
PRO 1400.0098
LEU 1410.0102
VAL 1420.0103
ILE 1430.0094
GLY 1440.0093
GLY 1450.0096
GLY 1460.0131
SER 1470.0116
ASP 1480.0096
ALA 1490.0090
MET 1500.0078
TYR 1510.0084
LEU 1520.0072
GLY 1530.0090
PHE 1540.0087
ALA 1550.0107
ALA 1560.0124
GLY 1570.0124
GLY 1580.0135
GLY 1590.0111
SER 1600.0104
ALA 1610.0079
GLY 1620.0089
GLY 1630.0078
GLU 1640.0072
ASN 1650.0047
HIS 1660.0052
VAL 1670.0052
ALA 1680.0078
PHE 1690.0093
GLY 1700.0123
PRO 1710.0161
GLY 1720.0177
PRO 1730.0180
GLY 1740.0149
VAL 1750.0110
ASP 1760.0096
LEU 1770.0067
THR 1780.0059
PHE 1790.0041
GLY 1800.0057
GLY 1810.0079
VAL 1820.0065
GLN 1830.0087
PHE 1840.0092
ALA 1850.0127
MET 1860.0131
VAL 1870.0173
ASN 1880.0203
ASN 1890.0227
GLY 1900.0264
PRO 1910.0240
GLY 1920.0230
PRO 1930.0247
GLY 1940.0189
GLU 1950.0163
SER 1960.0382
PHE 1970.0277
THR 1980.0482
ALA 1990.0507
GLN 2000.0445
PRO 2010.0522
ALA 2020.0245
ASP 2030.0094
MET 2040.0413
GLN 2050.0405
ALA 2060.0664
GLY 2070.0438
ILE 2080.0410
LYS 2090.0388
GLY 2100.0270
PRO 2110.0248
GLY 2120.0232
PRO 2130.0357
GLY 2140.0431
GLY 2150.0413
SER 2160.0589
ILE 2170.0441
GLN 2180.0562
VAL 2190.0496
ILE 2200.0618
ASN 2210.0636
GLY 2220.0646
SER 2230.0698
THR 2240.0778
ILE 2250.0803
GLY 2260.0921
THR 2270.0902
GLY 2280.0768
SER 2290.0592
LYS 2300.0489
LYS 2310.0455
THR 2320.0344
ILE 2330.0290
LEU 2340.0215
ILE 2350.0138
TYR 2360.0115
SER 2370.0066
ILE 2380.0090
ILE 2390.0050
GLY 2400.0092
VAL 2410.0051
LYS 2420.0033
LYS 2430.0034
GLY 2440.0039
THR 2450.0042
LEU 2460.0106
ALA 2470.0099
TRP 2480.0149
ALA 2490.0165
ARG 2500.0207
THR 2510.0207
GLY 2520.0305
PHE 2530.0276
SER 2540.0379
PRO 2550.0351
ALA 2560.0310
LYS 2570.0304
LYS 2580.0296
LEU 2590.0298
ASN 2600.0303
ALA 2610.0297
GLY 2620.0249
VAL 2630.0232
VAL 2640.0138
ARG 2650.0134
VAL 2660.0103
PHE 2670.0083
PHE 2680.0098
LEU 2690.0077
ASN 2700.0064
GLN 2710.0048
LYS 2720.0043
LYS 2730.0046
ALA 2740.0049
LYS 2750.0043
ASP 2760.0044
VAL 2770.0048
LEU 2780.0052
ARG 2790.0049
LYS 2800.0045
THR 2810.0051
SER 2820.0062
ARG 2830.0071
PRO 2840.0089
MET 2850.0120
VAL 2860.0169
ASP 2870.0060
LEU 2880.0109
THR 2890.0064
PHE 2900.0030
GLY 2910.0257
GLY 2920.0351

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.