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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 30  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0838
GLU 270.0128
PRO 280.0116
CYS 290.0101
VAL 300.0101
GLU 310.0113
VAL 320.0108
VAL 330.0122
PRO 340.0135
ASN 350.0129
ILE 360.0112
THR 370.0095
TYR 380.0088
GLN 390.0073
CYS 400.0073
MET 410.0056
GLU 420.0062
LEU 430.0081
ASN 440.0084
PHE 450.0084
TYR 460.0089
LYS 470.0086
ILE 480.0077
PRO 490.0093
ASP 500.0106
ASN 510.0120
LEU 520.0111
PRO 530.0119
PHE 540.0110
SER 550.0113
THR 560.0097
LYS 570.0086
ASN 580.0072
LEU 590.0062
ASP 600.0048
LEU 610.0047
SER 620.0032
PHE 630.0040
ASN 640.0056
PRO 650.0066
LEU 660.0061
ARG 670.0059
HIS 680.0056
LEU 690.0047
GLY 700.0052
SER 710.0048
TYR 720.0055
SER 730.0058
PHE 740.0059
PHE 750.0072
SER 760.0085
PHE 770.0078
PRO 780.0080
GLU 790.0086
LEU 800.0069
GLN 810.0065
VAL 820.0048
LEU 830.0035
ASP 840.0024
LEU 850.0019
SER 860.0015
ARG 870.0025
CYS 880.0034
GLU 890.0045
ILE 900.0039
GLN 910.0049
THR 920.0042
ILE 930.0029
GLU 940.0032
ASP 950.0024
GLY 960.0029
ALA 970.0033
TYR 980.0032
GLN 990.0038
SER 1000.0053
LEU 1010.0050
SER 1020.0055
HIS 1030.0061
LEU 1040.0044
SER 1050.0047
THR 1060.0032
LEU 1070.0021
ILE 1080.0016
LEU 1090.0013
THR 1100.0019
GLY 1110.0026
ASN 1120.0025
PRO 1130.0039
ILE 1140.0035
GLN 1150.0046
SER 1160.0040
LEU 1170.0023
ALA 1180.0018
LEU 1190.0012
GLY 1200.0008
ALA 1210.0009
PHE 1220.0013
SER 1230.0020
GLY 1240.0032
LEU 1250.0033
SER 1260.0044
SER 1270.0047
LEU 1280.0037
GLN 1290.0041
LYS 1300.0034
LEU 1310.0028
VAL 1320.0026
ALA 1330.0025
VAL 1340.0030
GLU 1350.0032
THR 1360.0028
ASN 1370.0033
LEU 1380.0031
ALA 1390.0034
SER 1400.0034
LEU 1410.0034
GLU 1420.0035
ASN 1430.0029
PHE 1440.0026
PRO 1450.0024
ILE 1460.0026
GLY 1470.0032
HIS 1480.0030
LEU 1490.0031
LYS 1500.0039
THR 1510.0041
LEU 1520.0036
LYS 1530.0038
GLU 1540.0036
LEU 1550.0035
ASN 1560.0035
VAL 1570.0033
ALA 1580.0035
HIS 1590.0035
ASN 1600.0034
LEU 1610.0036
ILE 1620.0034
GLN 1630.0036
SER 1640.0037
PHE 1650.0037
LYS 1660.0039
LEU 1670.0039
PRO 1680.0039
GLU 1690.0040
TYR 1700.0037
PHE 1710.0038
SER 1720.0042
ASN 1730.0038
LEU 1740.0037
THR 1750.0042
ASN 1760.0040
LEU 1770.0036
GLU 1780.0037
HIS 1790.0037
LEU 1800.0036
ASP 1810.0036
LEU 1820.0036
SER 1830.0036
SER 1840.0035
ASN 1850.0036
LYS 1860.0036
ILE 1870.0034
GLN 1880.0032
SER 1890.0031
ILE 1900.0031
TYR 1910.0032
CYS 1920.0035
THR 1930.0038
ASP 1940.0037
LEU 1950.0036
ARG 1960.0039
VAL 1970.0038
LEU 1980.0037
HIS 1990.0039
GLN 2000.0040
MET 2010.0038
PRO 2020.0036
LEU 2030.0037
LEU 2040.0037
ASN 2050.0034
LEU 2060.0034
SER 2070.0035
LEU 2080.0035
ASP 2090.0034
LEU 2100.0034
SER 2110.0033
LEU 2120.0034
ASN 2130.0034
PRO 2140.0033
MET 2150.0028
ASN 2160.0026
PHE 2170.0024
ILE 2180.0023
GLN 2190.0023
PRO 2200.0020
GLY 2210.0022
ALA 2220.0025
PHE 2230.0025
LYS 2240.0023
GLU 2250.0025
ILE 2260.0027
ARG 2270.0027
LEU 2280.0028
HIS 2290.0030
LYS 2300.0029
LEU 2310.0027
THR 2320.0029
LEU 2330.0027
ARG 2340.0032
ASN 2350.0035
ASN 2360.0032
PHE 2370.0033
ASP 2380.0041
SER 2390.0038
LEU 2400.0033
ASN 2410.0032
VAL 2420.0027
MET 2430.0023
LYS 2440.0020
THR 2450.0018
CYS 2460.0017
ILE 2470.0014
GLN 2480.0012
GLY 2490.0015
LEU 2500.0015
ALA 2510.0013
GLY 2520.0014
LEU 2530.0017
GLU 2540.0021
VAL 2550.0022
HIS 2560.0025
ARG 2570.0023
LEU 2580.0019
VAL 2590.0022
LEU 2600.0022
GLY 2610.0028
GLU 2620.0038
PHE 2630.0048
ARG 2640.0056
ASN 2650.0063
GLU 2660.0057
GLY 2670.0057
ASN 2680.0050
LEU 2690.0045
GLU 2700.0053
LYS 2710.0049
PHE 2720.0042
ASP 2730.0044
LYS 2740.0042
SER 2750.0038
ALA 2760.0031
LEU 2770.0021
GLU 2780.0025
GLY 2790.0018
LEU 2800.0014
CYS 2810.0022
ASN 2820.0014
LEU 2830.0013
THR 2840.0018
ILE 2850.0016
GLU 2860.0021
GLU 2870.0019
PHE 2880.0012
ARG 2890.0017
LEU 2900.0021
ALA 2910.0031
TYR 2920.0039
LEU 2930.0041
ASP 2940.0053
TYR 2950.0053
TYR 2960.0056
LEU 2970.0052
ASP 2980.0060
GLY 2990.0052
ILE 3000.0042
ILE 3010.0050
ASP 3020.0045
LEU 3030.0036
PHE 3040.0027
ASN 3050.0035
CYS 3060.0030
LEU 3070.0022
THR 3080.0030
ASN 3090.0034
VAL 3100.0023
SER 3110.0028
SER 3120.0020
PHE 3130.0009
SER 3140.0013
LEU 3150.0020
VAL 3160.0031
SER 3170.0042
VAL 3180.0039
THR 3190.0049
ILE 3200.0046
GLU 3210.0057
ARG 3220.0057
VAL 3230.0044
LYS 3240.0051
ASP 3250.0048
PHE 3260.0036
SER 3270.0046
TYR 3280.0050
ASN 3290.0048
PHE 3300.0039
GLY 3310.0041
TRP 3320.0028
GLN 3330.0033
HIS 3340.0023
LEU 3350.0009
GLU 3360.0015
LEU 3370.0020
VAL 3380.0032
ASN 3390.0044
CYS 3400.0040
LYS 3410.0050
PHE 3420.0047
GLY 3430.0058
GLN 3440.0050
PHE 3450.0035
PRO 3460.0030
THR 3470.0039
LEU 3480.0031
LYS 3490.0040
LEU 3500.0039
LYS 3510.0049
SER 3520.0051
LEU 3530.0034
LYS 3540.0038
ARG 3550.0027
LEU 3560.0012
THR 3570.0021
PHE 3580.0023
THR 3590.0036
SER 3600.0047
ASN 3610.0043
LYS 3620.0055
GLY 3630.0055
GLY 3640.0053
ASN 3650.0042
ALA 3660.0039
PHE 3670.0031
SER 3680.0031
GLU 3690.0025
VAL 3700.0021
ASP 3710.0029
LEU 3720.0041
PRO 3730.0058
SER 3740.0057
LEU 3750.0032
GLU 3760.0047
PHE 3770.0036
LEU 3780.0027
ASP 3790.0032
LEU 3800.0030
SER 3810.0043
ARG 3820.0048
ASN 3830.0042
GLY 3840.0048
LEU 3850.0038
SER 3860.0039
PHE 3870.0030
LYS 3880.0030
GLY 3890.0024
CYS 3900.0023
CYS 3910.0020
SER 3920.0010
GLN 3930.0011
SER 3940.0013
ASP 3950.0011
PHE 3960.0008
GLY 3970.0020
THR 3980.0023
ILE 3990.0034
SER 4000.0045
LEU 4010.0039
LYS 4020.0046
TYR 4030.0045
LEU 4040.0037
ASP 4050.0043
LEU 4060.0041
SER 4070.0046
PHE 4080.0050
ASN 4090.0045
GLY 4100.0045
VAL 4110.0042
ILE 4120.0037
THR 4130.0034
MET 4140.0031
SER 4150.0025
SER 4160.0021
ASN 4170.0026
PHE 4180.0024
LEU 4190.0018
GLY 4200.0020
LEU 4210.0026
GLU 4220.0035
GLN 4230.0039
LEU 4240.0040
GLU 4250.0049
HIS 4260.0049
LEU 4270.0044
ASP 4280.0047
PHE 4290.0047
GLN 4300.0052
HIS 4310.0054
SER 4320.0046
ASN 4330.0045
LEU 4340.0041
LYS 4350.0039
GLN 4360.0035
MET 4370.0036
SER 4380.0036
GLU 4390.0032
PHE 4400.0030
SER 4410.0032
VAL 4420.0033
PHE 4430.0035
LEU 4440.0032
SER 4450.0030
LEU 4460.0035
ARG 4470.0037
ASN 4480.0041
LEU 4490.0043
ILE 4500.0049
TYR 4510.0051
LEU 4520.0048
ASP 4530.0051
ILE 4540.0049
SER 4550.0052
HIS 4560.0053
THR 4570.0048
HIS 4580.0046
THR 4590.0041
ARG 4600.0038
VAL 4610.0035
ALA 4620.0033
PHE 4630.0032
ASN 4640.0031
GLY 4650.0033
ILE 4660.0036
PHE 4670.0037
ASN 4680.0035
GLY 4690.0036
LEU 4700.0039
SER 4710.0039
SER 4720.0043
LEU 4730.0044
GLU 4740.0049
VAL 4750.0051
LEU 4760.0048
LYS 4770.0050
MET 4780.0047
ALA 4790.0049
GLY 4800.0050
ASN 4810.0047
SER 4820.0040
PHE 4830.0032
GLN 4840.0030
GLU 4850.0028
ASN 4860.0026
PHE 4870.0021
LEU 4880.0021
PRO 4890.0020
ASP 4900.0021
ILE 4910.0028
PHE 4920.0030
THR 4930.0028
GLU 4940.0033
LEU 4950.0036
ARG 4960.0037
ASN 4970.0044
LEU 4980.0043
THR 4990.0048
PHE 5000.0048
LEU 5010.0043
ASP 5020.0044
LEU 5030.0039
SER 5040.0041
GLN 5050.0044
CYS 5060.0041
GLN 5070.0037
LEU 5080.0027
GLU 5090.0024
GLN 5100.0016
LEU 5110.0009
SER 5120.0004
PRO 5130.0007
THR 5140.0013
ALA 5150.0016
PHE 5160.0023
ASN 5170.0023
SER 5180.0031
LEU 5190.0034
SER 5200.0040
SER 5210.0047
LEU 5220.0044
GLN 5230.0049
VAL 5240.0044
LEU 5250.0035
ASN 5260.0036
MET 5270.0028
SER 5280.0033
HIS 5290.0040
ASN 5300.0035
ASN 5310.0036
PHE 5320.0029
PHE 5330.0037
SER 5340.0030
LEU 5350.0019
ASP 5360.0022
THR 5370.0024
PHE 5380.0030
PRO 5390.0019
TYR 5400.0027
LYS 5410.0041
CYS 5420.0038
LEU 5430.0039
ASN 5440.0051
SER 5450.0053
LEU 5460.0043
GLN 5470.0051
VAL 5480.0041
LEU 5490.0028
ASP 5500.0026
TYR 5510.0017
SER 5520.0026
LEU 5530.0038
ASN 5540.0035
HIS 5550.0041
ILE 5560.0031
MET 5570.0048
THR 5580.0050
SER 5590.0046
LYS 5600.0056
LYS 5610.0052
GLN 5620.0061
GLU 5630.0055
LEU 5640.0048
GLN 5650.0059
HIS 5660.0052
PHE 5670.0042
PRO 5680.0051
SER 5690.0061
SER 5700.0060
LEU 5710.0048
ALA 5720.0058
PHE 5730.0044
LEU 5740.0027
ASN 5750.0020
LEU 5760.0007
THR 5770.0019
GLN 5780.0036
ASN 5790.0035
ASP 5800.0053
PHE 5810.0051
ALA 5820.0075
CYS 5830.0079
THR 5840.0100
CYS 5850.0111
GLU 5860.0110
HIS 5870.0086
GLN 5880.0090
SER 5890.0086
PHE 5900.0063
LEU 5910.0063
GLN 5920.0074
TRP 5930.0064
ILE 5940.0046
LYS 5950.0057
ASP 5960.0070
GLN 5970.0055
ARG 5980.0044
GLN 5990.0055
LEU 6000.0047
LEU 6010.0027
VAL 6020.0034
GLU 6030.0022
VAL 6040.0009
GLU 6050.0011
ARG 6060.0025
MET 6070.0020
GLU 6080.0041
CYS 6090.0059
ALA 6100.0073
THR 6110.0090
PRO 6120.0100
SER 6130.0105
ASP 6140.0102
LYS 6150.0087
GLN 6160.0082
GLY 6170.0065
MET 6180.0056
PRO 6190.0037
VAL 6200.0044
LEU 6210.0042
SER 6220.0050
LEU 6230.0069
ASN 6240.0092
ILE 6250.0102
THR 6260.0125
CYS 6270.0152
GLU 10.0764
ALA 20.0284
ALA 30.0554
ALA 40.0633
LYS 50.0354
MET 60.0580
GLN 70.0646
ARG 80.0246
LEU 90.0529
VAL 100.0838
LEU 110.0450
LEU 120.0202
LEU 130.0718
ALA 140.0715
ILE 150.0192
SER 160.0373
LEU 170.0524
LEU 180.0357
LEU 190.0124
TYR 200.0374
GLN 210.0352
ASP 220.0191
LEU 230.0150
PRO 240.0167
VAL 250.0338
ARG 260.0124
SER 270.0091
GLU 280.0103
PHE 290.0081
GLU 300.0054
LEU 310.0050
ASP 320.0064
ARG 330.0059
ILE 340.0054
CYS 350.0064
GLY 360.0062
TYR 370.0055
GLY 380.0048
THR 390.0052
ALA 400.0057
ARG 410.0051
CYS 420.0058
ARG 430.0053
LYS 440.0060
LYS 450.0055
CYS 460.0046
ARG 470.0038
SER 480.0044
GLN 490.0045
GLU 500.0047
TYR 510.0061
ARG 520.0070
ILE 530.0080
GLY 540.0086
ARG 550.0087
CYS 560.0080
PRO 570.0087
ASN 580.0087
THR 590.0096
TYR 600.0082
ALA 610.0070
CYS 620.0064
CYS 630.0056
LEU 640.0055
ARG 650.0049
LYS 660.0043
TRP 670.0044
ASP 680.0041
GLU 690.0040
SER 700.0039
LEU 710.0040
LEU 720.0037
ASN 730.0032
ARG 740.0039
THR 750.0043
LYS 760.0034
PRO 770.0042
GLU 780.0045
ALA 790.0049
ALA 800.0054
ALA 810.0032
LYS 820.0038
LYS 830.0037
GLU 840.0028
MET 850.0034
ASN 860.0023
LEU 870.0024
SER 880.0020
VAL 890.0026
GLY 900.0027
LEU 910.0040
GLY 920.0045
GLY 930.0055
GLY 940.0047
SER 950.0045
ASN 960.0036
LEU 970.0039
SER 980.0034
VAL 990.0039
GLY 1000.0040
LEU 1010.0056
GLY 1020.0089
GLU 1030.0113
ILE 1040.0152
GLY 1050.0184
GLY 1060.0198
GLY 1070.0153
SER 1080.0104
LYS 1090.0070
LEU 1100.0034
LEU 1110.0037
ASP 1120.0041
ILE 1130.0037
ASN 1140.0044
LEU 1150.0043
GLY 1160.0048
ARG 1170.0056
GLY 1180.0053
GLY 1190.0055
GLY 1200.0050
SER 1210.0044
MET 1220.0034
VAL 1230.0028
ASP 1240.0016
LEU 1250.0020
THR 1260.0016
PHE 1270.0029
GLY 1280.0034
GLY 1290.0044
VAL 1300.0057
GLY 1310.0062
GLY 1320.0064
GLY 1330.0056
SER 1340.0055
THR 1350.0046
PHE 1360.0041
THR 1370.0044
PHE 1380.0040
PHE 1390.0048
PRO 1400.0047
LEU 1410.0050
VAL 1420.0052
ILE 1430.0054
GLY 1440.0059
GLY 1450.0058
GLY 1460.0067
SER 1470.0062
ASP 1480.0052
ALA 1490.0050
MET 1500.0042
TYR 1510.0045
LEU 1520.0042
GLY 1530.0048
PHE 1540.0047
ALA 1550.0052
ALA 1560.0060
GLY 1570.0060
GLY 1580.0064
GLY 1590.0055
SER 1600.0051
ALA 1610.0043
GLY 1620.0042
GLY 1630.0032
GLU 1640.0026
ASN 1650.0020
HIS 1660.0013
VAL 1670.0020
ALA 1680.0020
PHE 1690.0033
GLY 1700.0038
PRO 1710.0063
GLY 1720.0063
PRO 1730.0066
GLY 1740.0050
VAL 1750.0039
ASP 1760.0026
LEU 1770.0022
THR 1780.0012
PHE 1790.0018
GLY 1800.0018
GLY 1810.0008
VAL 1820.0007
GLN 1830.0013
PHE 1840.0024
ALA 1850.0033
MET 1860.0044
VAL 1870.0055
ASN 1880.0069
ASN 1890.0078
GLY 1900.0091
PRO 1910.0061
GLY 1920.0057
PRO 1930.0066
GLY 1940.0039
GLU 1950.0012
SER 1960.0036
PHE 1970.0047
THR 1980.0024
ALA 1990.0046
GLN 2000.0041
PRO 2010.0080
ALA 2020.0049
ASP 2030.0032
MET 2040.0081
GLN 2050.0062
ALA 2060.0102
GLY 2070.0035
ILE 2080.0043
LYS 2090.0065
GLY 2100.0048
PRO 2110.0029
GLY 2120.0051
PRO 2130.0084
GLY 2140.0091
GLY 2150.0074
SER 2160.0093
ILE 2170.0092
GLN 2180.0090
VAL 2190.0087
ILE 2200.0088
ASN 2210.0072
GLY 2220.0080
SER 2230.0102
THR 2240.0099
ILE 2250.0112
GLY 2260.0151
THR 2270.0156
GLY 2280.0129
SER 2290.0111
LYS 2300.0071
LYS 2310.0063
THR 2320.0033
ILE 2330.0035
LEU 2340.0042
ILE 2350.0037
TYR 2360.0048
SER 2370.0048
ILE 2380.0051
ILE 2390.0053
GLY 2400.0056
VAL 2410.0051
LYS 2420.0046
LYS 2430.0041
GLY 2440.0045
THR 2450.0051
LEU 2460.0051
ALA 2470.0056
TRP 2480.0058
ALA 2490.0061
ARG 2500.0063
THR 2510.0067
GLY 2520.0059
PHE 2530.0040
SER 2540.0040
PRO 2550.0031
ALA 2560.0053
LYS 2570.0066
LYS 2580.0075
LEU 2590.0087
ASN 2600.0104
ALA 2610.0070
GLY 2620.0052
VAL 2630.0041
VAL 2640.0032
ARG 2650.0030
VAL 2660.0034
PHE 2670.0039
PHE 2680.0037
LEU 2690.0043
ASN 2700.0046
GLN 2710.0047
LYS 2720.0046
LYS 2730.0047
ALA 2740.0052
LYS 2750.0054
ASP 2760.0059
VAL 2770.0071
LEU 2780.0066
ARG 2790.0064
LYS 2800.0075
THR 2810.0100
SER 2820.0103
ARG 2830.0104
PRO 2840.0107
MET 2850.0107
VAL 2860.0114
ASP 2870.0097
LEU 2880.0103
THR 2890.0091
PHE 2900.0093
GLY 2910.0093
GLY 2920.0112

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.