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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 31  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0576
GLU 270.0040
PRO 280.0083
CYS 290.0084
VAL 300.0137
GLU 310.0154
VAL 320.0195
VAL 330.0214
PRO 340.0196
ASN 350.0181
ILE 360.0185
THR 370.0153
TYR 380.0108
GLN 390.0111
CYS 400.0076
MET 410.0119
GLU 420.0155
LEU 430.0136
ASN 440.0159
PHE 450.0120
TYR 460.0157
LYS 470.0128
ILE 480.0084
PRO 490.0059
ASP 500.0096
ASN 510.0067
LEU 520.0080
PRO 530.0135
PHE 540.0168
SER 550.0188
THR 560.0142
LYS 570.0154
ASN 580.0123
LEU 590.0072
ASP 600.0069
LEU 610.0050
SER 620.0090
PHE 630.0134
ASN 640.0126
PRO 650.0159
LEU 660.0133
ARG 670.0161
HIS 680.0167
LEU 690.0143
GLY 700.0181
SER 710.0197
TYR 720.0183
SER 730.0142
PHE 740.0121
PHE 750.0167
SER 760.0145
PHE 770.0136
PRO 780.0182
GLU 790.0183
LEU 800.0134
GLN 810.0138
VAL 820.0096
LEU 830.0050
ASP 840.0043
LEU 850.0042
SER 860.0080
ARG 870.0113
CYS 880.0107
GLU 890.0144
ILE 900.0128
GLN 910.0164
THR 920.0171
ILE 930.0147
GLU 940.0184
ASP 950.0201
GLY 960.0188
ALA 970.0152
TYR 980.0132
GLN 990.0179
SER 1000.0180
LEU 1010.0150
SER 1020.0180
HIS 1030.0171
LEU 1040.0122
SER 1050.0123
THR 1060.0083
LEU 1070.0042
ILE 1080.0031
LEU 1090.0039
THR 1100.0070
GLY 1110.0105
ASN 1120.0107
PRO 1130.0145
ILE 1140.0135
GLN 1150.0177
SER 1160.0182
LEU 1170.0152
ALA 1180.0179
LEU 1190.0179
GLY 1200.0184
ALA 1210.0146
PHE 1220.0123
SER 1230.0163
GLY 1240.0171
LEU 1250.0139
SER 1260.0173
SER 1270.0143
LEU 1280.0103
GLN 1290.0105
LYS 1300.0073
LEU 1310.0035
VAL 1320.0035
ALA 1330.0032
VAL 1340.0059
GLU 1350.0087
THR 1360.0078
ASN 1370.0101
LEU 1380.0078
ALA 1390.0090
SER 1400.0074
LEU 1410.0060
GLU 1420.0091
ASN 1430.0107
PHE 1440.0084
PRO 1450.0105
ILE 1460.0092
GLY 1470.0114
HIS 1480.0136
LEU 1490.0113
LYS 1500.0134
THR 1510.0130
LEU 1520.0086
LYS 1530.0091
GLU 1540.0069
LEU 1550.0040
ASN 1560.0039
VAL 1570.0029
ALA 1580.0056
HIS 1590.0080
ASN 1600.0071
LEU 1610.0083
ILE 1620.0045
GLN 1630.0051
SER 1640.0037
PHE 1650.0021
LYS 1660.0039
LEU 1670.0047
PRO 1680.0075
GLU 1690.0100
TYR 1700.0103
PHE 1710.0086
SER 1720.0110
ASN 1730.0122
LEU 1740.0100
THR 1750.0122
ASN 1760.0117
LEU 1770.0079
GLU 1780.0086
HIS 1790.0068
LEU 1800.0045
ASP 1810.0044
LEU 1820.0033
SER 1830.0053
SER 1840.0065
ASN 1850.0053
LYS 1860.0057
ILE 1870.0028
GLN 1880.0031
SER 1890.0022
ILE 1900.0019
TYR 1910.0021
CYS 1920.0032
THR 1930.0041
ASP 1940.0034
LEU 1950.0045
ARG 1960.0062
VAL 1970.0069
LEU 1980.0067
HIS 1990.0077
GLN 2000.0095
MET 2010.0101
PRO 2020.0103
LEU 2030.0109
LEU 2040.0086
ASN 2050.0085
LEU 2060.0064
SER 2070.0062
LEU 2080.0051
ASP 2090.0051
LEU 2100.0046
SER 2110.0057
LEU 2120.0054
ASN 2130.0044
PRO 2140.0045
MET 2150.0040
ASN 2160.0038
PHE 2170.0032
ILE 2180.0033
GLN 2190.0032
PRO 2200.0043
GLY 2210.0049
ALA 2220.0041
PHE 2230.0051
LYS 2240.0061
GLU 2250.0071
ILE 2260.0064
ARG 2270.0062
LEU 2280.0059
HIS 2290.0063
LYS 2300.0060
LEU 2310.0056
THR 2320.0053
LEU 2330.0053
ARG 2340.0055
ASN 2350.0055
ASN 2360.0052
PHE 2370.0049
ASP 2380.0050
SER 2390.0052
LEU 2400.0054
ASN 2410.0055
VAL 2420.0050
MET 2430.0052
LYS 2440.0055
THR 2450.0052
CYS 2460.0049
ILE 2470.0055
GLN 2480.0057
GLY 2490.0050
LEU 2500.0053
ALA 2510.0060
GLY 2520.0064
LEU 2530.0060
GLU 2540.0062
VAL 2550.0059
HIS 2560.0061
ARG 2570.0059
LEU 2580.0058
VAL 2590.0058
LEU 2600.0058
GLY 2610.0059
GLU 2620.0052
PHE 2630.0048
ARG 2640.0044
ASN 2650.0045
GLU 2660.0051
GLY 2670.0050
ASN 2680.0049
LEU 2690.0051
GLU 2700.0052
LYS 2710.0052
PHE 2720.0056
ASP 2730.0059
LYS 2740.0059
SER 2750.0063
ALA 2760.0060
LEU 2770.0061
GLU 2780.0065
GLY 2790.0063
LEU 2800.0061
CYS 2810.0065
ASN 2820.0065
LEU 2830.0062
THR 2840.0062
ILE 2850.0059
GLU 2860.0059
GLU 2870.0055
PHE 2880.0055
ARG 2890.0055
LEU 2900.0055
ALA 2910.0054
TYR 2920.0045
LEU 2930.0047
ASP 2940.0048
TYR 2950.0049
TYR 2960.0044
LEU 2970.0046
ASP 2980.0047
GLY 2990.0044
ILE 3000.0044
ILE 3010.0048
ASP 3020.0056
LEU 3030.0054
PHE 3040.0052
ASN 3050.0056
CYS 3060.0058
LEU 3070.0053
THR 3080.0048
ASN 3090.0051
VAL 3100.0051
SER 3110.0047
SER 3120.0046
PHE 3130.0045
SER 3140.0044
LEU 3150.0043
VAL 3160.0042
SER 3170.0039
VAL 3180.0041
THR 3190.0039
ILE 3200.0037
GLU 3210.0036
ARG 3220.0032
VAL 3230.0024
LYS 3240.0023
ASP 3250.0029
PHE 3260.0023
SER 3270.0018
TYR 3280.0027
ASN 3290.0028
PHE 3300.0035
GLY 3310.0041
TRP 3320.0037
GLN 3330.0039
HIS 3340.0037
LEU 3350.0032
GLU 3360.0033
LEU 3370.0026
VAL 3380.0025
ASN 3390.0024
CYS 3400.0027
LYS 3410.0029
PHE 3420.0025
GLY 3430.0032
GLN 3440.0023
PHE 3450.0011
PRO 3460.0008
THR 3470.0008
LEU 3480.0004
LYS 3490.0009
LEU 3500.0020
LYS 3510.0028
SER 3520.0035
LEU 3530.0029
LYS 3540.0036
ARG 3550.0030
LEU 3560.0018
THR 3570.0019
PHE 3580.0011
THR 3590.0010
SER 3600.0005
ASN 3610.0009
LYS 3620.0019
GLY 3630.0027
GLY 3640.0029
ASN 3650.0023
ALA 3660.0034
PHE 3670.0031
SER 3680.0032
GLU 3690.0034
VAL 3700.0025
ASP 3710.0028
LEU 3720.0031
PRO 3730.0044
SER 3740.0045
LEU 3750.0037
GLU 3760.0042
PHE 3770.0035
LEU 3780.0028
ASP 3790.0025
LEU 3800.0020
SER 3810.0020
ARG 3820.0021
ASN 3830.0016
GLY 3840.0029
LEU 3850.0032
SER 3860.0045
PHE 3870.0053
LYS 3880.0062
GLY 3890.0069
CYS 3900.0065
CYS 3910.0068
SER 3920.0067
GLN 3930.0064
SER 3940.0058
ASP 3950.0051
PHE 3960.0044
GLY 3970.0048
THR 3980.0053
ILE 3990.0066
SER 4000.0063
LEU 4010.0054
LYS 4020.0061
TYR 4030.0054
LEU 4040.0051
ASP 4050.0045
LEU 4060.0045
SER 4070.0051
PHE 4080.0046
ASN 4090.0047
GLY 4100.0051
VAL 4110.0059
ILE 4120.0064
THR 4130.0070
MET 4140.0074
SER 4150.0078
SER 4160.0079
ASN 4170.0083
PHE 4180.0077
LEU 4190.0080
GLY 4200.0077
LEU 4210.0074
GLU 4220.0080
GLN 4230.0076
LEU 4240.0072
GLU 4250.0072
HIS 4260.0066
LEU 4270.0069
ASP 4280.0068
PHE 4290.0068
GLN 4300.0069
HIS 4310.0068
SER 4320.0064
ASN 4330.0067
LEU 4340.0070
LYS 4350.0073
GLN 4360.0077
MET 4370.0077
SER 4380.0078
GLU 4390.0081
PHE 4400.0082
SER 4410.0082
VAL 4420.0082
PHE 4430.0081
LEU 4440.0085
SER 4450.0086
LEU 4460.0083
ARG 4470.0083
ASN 4480.0082
LEU 4490.0081
ILE 4500.0080
TYR 4510.0080
LEU 4520.0081
ASP 4530.0081
ILE 4540.0080
SER 4550.0080
HIS 4560.0081
THR 4570.0080
HIS 4580.0078
THR 4590.0076
ARG 4600.0072
VAL 4610.0070
ALA 4620.0068
PHE 4630.0069
ASN 4640.0065
GLY 4650.0072
ILE 4660.0075
PHE 4670.0076
ASN 4680.0076
GLY 4690.0080
LEU 4700.0080
SER 4710.0078
SER 4720.0081
LEU 4730.0081
GLU 4740.0083
VAL 4750.0086
LEU 4760.0082
LYS 4770.0085
MET 4780.0082
ALA 4790.0081
GLY 4800.0083
ASN 4810.0082
SER 4820.0077
PHE 4830.0066
GLN 4840.0065
GLU 4850.0063
ASN 4860.0058
PHE 4870.0048
LEU 4880.0044
PRO 4890.0040
ASP 4900.0037
ILE 4910.0052
PHE 4920.0055
THR 4930.0048
GLU 4940.0059
LEU 4950.0067
ARG 4960.0066
ASN 4970.0079
LEU 4980.0078
THR 4990.0088
PHE 5000.0090
LEU 5010.0078
ASP 5020.0080
LEU 5030.0071
SER 5040.0077
GLN 5050.0082
CYS 5060.0077
GLN 5070.0074
LEU 5080.0056
GLU 5090.0051
GLN 5100.0037
LEU 5110.0022
SER 5120.0015
PRO 5130.0013
THR 5140.0014
ALA 5150.0022
PHE 5160.0039
ASN 5170.0034
SER 5180.0046
LEU 5190.0060
SER 5200.0074
SER 5210.0090
LEU 5220.0087
GLN 5230.0103
VAL 5240.0095
LEU 5250.0072
ASN 5260.0075
MET 5270.0059
SER 5280.0072
HIS 5290.0084
ASN 5300.0071
ASN 5310.0071
PHE 5320.0054
PHE 5330.0064
SER 5340.0047
LEU 5350.0025
ASP 5360.0040
THR 5370.0050
PHE 5380.0061
PRO 5390.0038
TYR 5400.0058
LYS 5410.0085
CYS 5420.0076
LEU 5430.0080
ASN 5440.0106
SER 5450.0114
LEU 5460.0098
GLN 5470.0123
VAL 5480.0104
LEU 5490.0074
ASP 5500.0072
TYR 5510.0049
SER 5520.0072
LEU 5530.0087
ASN 5540.0072
HIS 5550.0074
ILE 5560.0045
MET 5570.0070
THR 5580.0075
SER 5590.0073
LYS 5600.0101
LYS 5610.0099
GLN 5620.0114
GLU 5630.0108
LEU 5640.0091
GLN 5650.0120
HIS 5660.0107
PHE 5670.0093
PRO 5680.0115
SER 5690.0141
SER 5700.0142
LEU 5710.0118
ALA 5720.0148
PHE 5730.0121
LEU 5740.0084
ASN 5750.0077
LEU 5760.0044
THR 5770.0071
GLN 5780.0085
ASN 5790.0064
ASP 5800.0088
PHE 5810.0067
ALA 5820.0110
CYS 5830.0107
THR 5840.0151
CYS 5850.0174
GLU 5860.0184
HIS 5870.0136
GLN 5880.0138
SER 5890.0142
PHE 5900.0097
LEU 5910.0086
GLN 5920.0116
TRP 5930.0110
ILE 5940.0072
LYS 5950.0096
ASP 5960.0133
GLN 5970.0117
ARG 5980.0107
GLN 5990.0142
LEU 6000.0125
LEU 6010.0094
VAL 6020.0124
GLU 6030.0106
VAL 6040.0070
GLU 6050.0073
ARG 6060.0088
MET 6070.0042
GLU 6080.0059
CYS 6090.0077
ALA 6100.0115
THR 6110.0144
PRO 6120.0155
SER 6130.0169
ASP 6140.0153
LYS 6150.0119
GLN 6160.0123
GLY 6170.0102
MET 6180.0065
PRO 6190.0027
VAL 6200.0025
LEU 6210.0039
SER 6220.0034
LEU 6230.0068
ASN 6240.0113
ILE 6250.0145
THR 6260.0186
CYS 6270.0237
GLU 10.0220
ALA 20.0162
ALA 30.0109
ALA 40.0155
LYS 50.0132
MET 60.0144
GLN 70.0169
ARG 80.0122
LEU 90.0109
VAL 100.0209
LEU 110.0172
LEU 120.0076
LEU 130.0149
ALA 140.0210
ILE 150.0146
SER 160.0105
LEU 170.0145
LEU 180.0145
LEU 190.0099
TYR 200.0103
GLN 210.0115
ASP 220.0099
LEU 230.0077
PRO 240.0080
VAL 250.0097
ARG 260.0078
SER 270.0059
GLU 280.0073
PHE 290.0079
GLU 300.0058
LEU 310.0048
ASP 320.0065
ARG 330.0072
ILE 340.0073
CYS 350.0091
GLY 360.0085
TYR 370.0074
GLY 380.0083
THR 390.0100
ALA 400.0104
ARG 410.0096
CYS 420.0109
ARG 430.0116
LYS 440.0138
LYS 450.0144
CYS 460.0144
ARG 470.0126
SER 480.0129
GLN 490.0122
GLU 500.0134
TYR 510.0155
ARG 520.0165
ILE 530.0171
GLY 540.0176
ARG 550.0170
CYS 560.0140
PRO 570.0137
ASN 580.0136
THR 590.0167
TYR 600.0151
ALA 610.0152
CYS 620.0140
CYS 630.0133
LEU 640.0132
ARG 650.0124
LYS 660.0147
TRP 670.0144
ASP 680.0113
GLU 690.0102
SER 700.0090
LEU 710.0121
LEU 720.0130
ASN 730.0109
ARG 740.0122
THR 750.0154
LYS 760.0127
PRO 770.0129
GLU 780.0133
ALA 790.0129
ALA 800.0132
ALA 810.0048
LYS 820.0080
LYS 830.0063
GLU 840.0059
MET 850.0066
ASN 860.0054
LEU 870.0055
SER 880.0054
VAL 890.0057
GLY 900.0067
LEU 910.0084
GLY 920.0098
GLY 930.0125
GLY 940.0118
SER 950.0109
ASN 960.0098
LEU 970.0091
SER 980.0082
VAL 990.0085
GLY 1000.0089
LEU 1010.0135
GLY 1020.0236
GLU 1030.0298
ILE 1040.0406
GLY 1050.0498
GLY 1060.0576
GLY 1070.0441
SER 1080.0308
LYS 1090.0193
LEU 1100.0072
LEU 1110.0072
ASP 1120.0077
ILE 1130.0071
ASN 1140.0080
LEU 1150.0077
GLY 1160.0084
ARG 1170.0095
GLY 1180.0087
GLY 1190.0089
GLY 1200.0080
SER 1210.0077
MET 1220.0058
VAL 1230.0059
ASP 1240.0048
LEU 1250.0071
THR 1260.0075
PHE 1270.0110
GLY 1280.0128
GLY 1290.0155
VAL 1300.0187
GLY 1310.0210
GLY 1320.0214
GLY 1330.0185
SER 1340.0185
THR 1350.0157
PHE 1360.0143
THR 1370.0149
PHE 1380.0134
PHE 1390.0155
PRO 1400.0146
LEU 1410.0147
VAL 1420.0155
ILE 1430.0144
GLY 1440.0155
GLY 1450.0143
GLY 1460.0140
SER 1470.0127
ASP 1480.0102
ALA 1490.0109
MET 1500.0102
TYR 1510.0120
LEU 1520.0124
GLY 1530.0145
PHE 1540.0153
ALA 1550.0176
ALA 1560.0206
GLY 1570.0203
GLY 1580.0213
GLY 1590.0181
SER 1600.0165
ALA 1610.0144
GLY 1620.0140
GLY 1630.0115
GLU 1640.0104
ASN 1650.0086
HIS 1660.0065
VAL 1670.0068
ALA 1680.0049
PHE 1690.0071
GLY 1700.0073
PRO 1710.0131
GLY 1720.0149
PRO 1730.0172
GLY 1740.0133
VAL 1750.0104
ASP 1760.0069
LEU 1770.0075
THR 1780.0049
PHE 1790.0072
GLY 1800.0068
GLY 1810.0032
VAL 1820.0032
GLN 1830.0047
PHE 1840.0088
ALA 1850.0113
MET 1860.0158
VAL 1870.0217
ASN 1880.0257
ASN 1890.0322
GLY 1900.0355
PRO 1910.0238
GLY 1920.0277
PRO 1930.0257
GLY 1940.0121
GLU 1950.0036
SER 1960.0211
PHE 1970.0198
THR 1980.0055
ALA 1990.0090
GLN 2000.0036
PRO 2010.0156
ALA 2020.0127
ASP 2030.0045
MET 2040.0143
GLN 2050.0080
ALA 2060.0131
GLY 2070.0078
ILE 2080.0040
LYS 2090.0049
GLY 2100.0065
PRO 2110.0097
GLY 2120.0156
PRO 2130.0236
GLY 2140.0259
GLY 2150.0192
SER 2160.0262
ILE 2170.0263
GLN 2180.0275
VAL 2190.0313
ILE 2200.0297
ASN 2210.0242
GLY 2220.0261
SER 2230.0274
THR 2240.0247
ILE 2250.0297
GLY 2260.0395
THR 2270.0404
GLY 2280.0358
SER 2290.0307
LYS 2300.0220
LYS 2310.0179
THR 2320.0123
ILE 2330.0117
LEU 2340.0133
ILE 2350.0116
TYR 2360.0126
SER 2370.0126
ILE 2380.0121
ILE 2390.0116
GLY 2400.0116
VAL 2410.0072
LYS 2420.0065
LYS 2430.0052
GLY 2440.0052
THR 2450.0065
LEU 2460.0083
ALA 2470.0098
TRP 2480.0110
ALA 2490.0123
ARG 2500.0135
THR 2510.0164
GLY 2520.0148
PHE 2530.0102
SER 2540.0086
PRO 2550.0067
ALA 2560.0057
LYS 2570.0094
LYS 2580.0129
LEU 2590.0137
ASN 2600.0184
ALA 2610.0049
GLY 2620.0039
VAL 2630.0036
VAL 2640.0064
ARG 2650.0076
VAL 2660.0097
PHE 2670.0108
PHE 2680.0116
LEU 2690.0125
ASN 2700.0138
GLN 2710.0112
LYS 2720.0104
LYS 2730.0121
ALA 2740.0126
LYS 2750.0113
ASP 2760.0141
VAL 2770.0185
LEU 2780.0176
ARG 2790.0173
LYS 2800.0210
THR 2810.0314
SER 2820.0387
ARG 2830.0363
PRO 2840.0429
MET 2850.0457
VAL 2860.0412
ASP 2870.0357
LEU 2880.0375
THR 2890.0316
PHE 2900.0324
GLY 2910.0301
GLY 2920.0309

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.