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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 32  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.1602
GLU 270.0056
PRO 280.0039
CYS 290.0032
VAL 300.0032
GLU 310.0051
VAL 320.0057
VAL 330.0074
PRO 340.0080
ASN 350.0082
ILE 360.0073
THR 370.0055
TYR 380.0040
GLN 390.0023
CYS 400.0019
MET 410.0015
GLU 420.0030
LEU 430.0034
ASN 440.0050
PHE 450.0051
TYR 460.0066
LYS 470.0065
ILE 480.0054
PRO 490.0057
ASP 500.0074
ASN 510.0074
LEU 520.0066
PRO 530.0079
PHE 540.0084
SER 550.0084
THR 560.0065
LYS 570.0060
ASN 580.0045
LEU 590.0030
ASP 600.0016
LEU 610.0016
SER 620.0020
PHE 630.0036
ASN 640.0040
PRO 650.0056
LEU 660.0052
ARG 670.0058
HIS 680.0061
LEU 690.0054
GLY 700.0066
SER 710.0068
TYR 720.0069
SER 730.0060
PHE 740.0054
PHE 750.0071
SER 760.0073
PHE 770.0063
PRO 780.0072
GLU 790.0070
LEU 800.0052
GLN 810.0049
VAL 820.0032
LEU 830.0019
ASP 840.0013
LEU 850.0016
SER 860.0027
ARG 870.0037
CYS 880.0036
GLU 890.0050
ILE 900.0045
GLN 910.0056
THR 920.0055
ILE 930.0046
GLU 940.0056
ASP 950.0057
GLY 960.0056
ALA 970.0050
TYR 980.0042
GLN 990.0055
SER 1000.0061
LEU 1010.0050
SER 1020.0054
HIS 1030.0053
LEU 1040.0036
SER 1050.0037
THR 1060.0025
LEU 1070.0013
ILE 1080.0016
LEU 1090.0020
THR 1100.0031
GLY 1110.0041
ASN 1120.0037
PRO 1130.0049
ILE 1140.0043
GLN 1150.0055
SER 1160.0053
LEU 1170.0039
ALA 1180.0043
LEU 1190.0038
GLY 1200.0042
ALA 1210.0035
PHE 1220.0026
SER 1230.0037
GLY 1240.0043
LEU 1250.0034
SER 1260.0042
SER 1270.0037
LEU 1280.0026
GLN 1290.0031
LYS 1300.0025
LEU 1310.0017
VAL 1320.0023
ALA 1330.0023
VAL 1340.0033
GLU 1350.0039
THR 1360.0033
ASN 1370.0037
LEU 1380.0028
ALA 1390.0026
SER 1400.0018
LEU 1410.0013
GLU 1420.0011
ASN 1430.0017
PHE 1440.0013
PRO 1450.0013
ILE 1460.0010
GLY 1470.0012
HIS 1480.0019
LEU 1490.0018
LYS 1500.0025
THR 1510.0028
LEU 1520.0022
LYS 1530.0028
GLU 1540.0027
LEU 1550.0023
ASN 1560.0027
VAL 1570.0025
ALA 1580.0032
HIS 1590.0037
ASN 1600.0032
LEU 1610.0032
ILE 1620.0021
GLN 1630.0020
SER 1640.0018
PHE 1650.0018
LYS 1660.0015
LEU 1670.0014
PRO 1680.0009
GLU 1690.0009
TYR 1700.0010
PHE 1710.0013
SER 1720.0016
ASN 1730.0017
LEU 1740.0017
THR 1750.0024
ASN 1760.0026
LEU 1770.0023
GLU 1780.0028
HIS 1790.0028
LEU 1800.0025
ASP 1810.0028
LEU 1820.0025
SER 1830.0029
SER 1840.0031
ASN 1850.0027
LYS 1860.0026
ILE 1870.0021
GLN 1880.0019
SER 1890.0018
ILE 1900.0017
TYR 1910.0016
CYS 1920.0017
THR 1930.0015
ASP 1940.0016
LEU 1950.0016
ARG 1960.0015
VAL 1970.0013
LEU 1980.0017
HIS 1990.0017
GLN 2000.0015
MET 2010.0018
PRO 2020.0020
LEU 2030.0020
LEU 2040.0020
ASN 2050.0022
LEU 2060.0022
SER 2070.0026
LEU 2080.0025
ASP 2090.0026
LEU 2100.0025
SER 2110.0026
LEU 2120.0024
ASN 2130.0024
PRO 2140.0023
MET 2150.0019
ASN 2160.0017
PHE 2170.0015
ILE 2180.0014
GLN 2190.0014
PRO 2200.0013
GLY 2210.0013
ALA 2220.0015
PHE 2230.0015
LYS 2240.0014
GLU 2250.0014
ILE 2260.0015
ARG 2270.0018
LEU 2280.0020
HIS 2290.0022
LYS 2300.0021
LEU 2310.0020
THR 2320.0021
LEU 2330.0020
ARG 2340.0022
ASN 2350.0023
ASN 2360.0022
PHE 2370.0021
ASP 2380.0026
SER 2390.0023
LEU 2400.0018
ASN 2410.0018
VAL 2420.0017
MET 2430.0013
LYS 2440.0011
THR 2450.0010
CYS 2460.0012
ILE 2470.0010
GLN 2480.0008
GLY 2490.0011
LEU 2500.0011
ALA 2510.0008
GLY 2520.0008
LEU 2530.0012
GLU 2540.0015
VAL 2550.0016
HIS 2560.0018
ARG 2570.0017
LEU 2580.0014
VAL 2590.0016
LEU 2600.0015
GLY 2610.0019
GLU 2620.0024
PHE 2630.0030
ARG 2640.0033
ASN 2650.0040
GLU 2660.0038
GLY 2670.0037
ASN 2680.0032
LEU 2690.0028
GLU 2700.0034
LYS 2710.0030
PHE 2720.0026
ASP 2730.0027
LYS 2740.0025
SER 2750.0021
ALA 2760.0017
LEU 2770.0011
GLU 2780.0013
GLY 2790.0008
LEU 2800.0007
CYS 2810.0012
ASN 2820.0006
LEU 2830.0008
THR 2840.0012
ILE 2850.0012
GLU 2860.0015
GLU 2870.0013
PHE 2880.0008
ARG 2890.0010
LEU 2900.0013
ALA 2910.0019
TYR 2920.0022
LEU 2930.0025
ASP 2940.0034
TYR 2950.0034
TYR 2960.0037
LEU 2970.0035
ASP 2980.0042
GLY 2990.0037
ILE 3000.0030
ILE 3010.0036
ASP 3020.0029
LEU 3030.0023
PHE 3040.0018
ASN 3050.0023
CYS 3060.0018
LEU 3070.0014
THR 3080.0022
ASN 3090.0024
VAL 3100.0017
SER 3110.0020
SER 3120.0013
PHE 3130.0007
SER 3140.0005
LEU 3150.0011
VAL 3160.0017
SER 3170.0025
VAL 3180.0025
THR 3190.0033
ILE 3200.0033
GLU 3210.0042
ARG 3220.0044
VAL 3230.0038
LYS 3240.0044
ASP 3250.0039
PHE 3260.0033
SER 3270.0041
TYR 3280.0040
ASN 3290.0039
PHE 3300.0031
GLY 3310.0032
TRP 3320.0023
GLN 3330.0025
HIS 3340.0016
LEU 3350.0009
GLU 3360.0004
LEU 3370.0011
VAL 3380.0016
ASN 3390.0025
CYS 3400.0026
LYS 3410.0035
PHE 3420.0037
GLY 3430.0046
GLN 3440.0044
PHE 3450.0036
PRO 3460.0034
THR 3470.0040
LEU 3480.0034
LYS 3490.0040
LEU 3500.0036
LYS 3510.0044
SER 3520.0039
LEU 3530.0029
LYS 3540.0029
ARG 3550.0018
LEU 3560.0011
THR 3570.0003
PHE 3580.0011
THR 3590.0014
SER 3600.0024
ASN 3610.0026
LYS 3620.0037
GLY 3630.0042
GLY 3640.0044
ASN 3650.0037
ALA 3660.0042
PHE 3670.0037
SER 3680.0043
GLU 3690.0044
VAL 3700.0039
ASP 3710.0044
LEU 3720.0037
PRO 3730.0045
SER 3740.0042
LEU 3750.0033
GLU 3760.0032
PHE 3770.0021
LEU 3780.0014
ASP 3790.0004
LEU 3800.0012
SER 3810.0013
ARG 3820.0021
ASN 3830.0025
GLY 3840.0031
LEU 3850.0030
SER 3860.0036
PHE 3870.0035
LYS 3880.0043
GLY 3890.0044
CYS 3900.0035
CYS 3910.0032
SER 3920.0042
GLN 3930.0046
SER 3940.0051
ASP 3950.0043
PHE 3960.0038
GLY 3970.0048
THR 3980.0044
ILE 3990.0050
SER 4000.0045
LEU 4010.0034
LYS 4020.0028
TYR 4030.0019
LEU 4040.0014
ASP 4050.0006
LEU 4060.0013
SER 4070.0013
PHE 4080.0021
ASN 4090.0025
GLY 4100.0032
VAL 4110.0033
ILE 4120.0030
THR 4130.0036
MET 4140.0033
SER 4150.0040
SER 4160.0039
ASN 4170.0034
PHE 4180.0033
LEU 4190.0041
GLY 4200.0044
LEU 4210.0036
GLU 4220.0036
GLN 4230.0035
LEU 4240.0026
GLU 4250.0024
HIS 4260.0016
LEU 4270.0010
ASP 4280.0004
PHE 4290.0011
GLN 4300.0014
HIS 4310.0022
SER 4320.0021
ASN 4330.0028
LEU 4340.0025
LYS 4350.0032
GLN 4360.0034
MET 4370.0023
SER 4380.0024
GLU 4390.0031
PHE 4400.0028
SER 4410.0024
VAL 4420.0024
PHE 4430.0021
LEU 4440.0026
SER 4450.0030
LEU 4460.0025
ARG 4470.0026
ASN 4480.0027
LEU 4490.0020
ILE 4500.0019
TYR 4510.0014
LEU 4520.0006
ASP 4530.0005
ILE 4540.0010
SER 4550.0014
HIS 4560.0021
THR 4570.0019
HIS 4580.0024
THR 4590.0019
ARG 4600.0020
VAL 4610.0014
ALA 4620.0015
PHE 4630.0013
ASN 4640.0009
GLY 4650.0013
ILE 4660.0013
PHE 4670.0010
ASN 4680.0013
GLY 4690.0017
LEU 4700.0016
SER 4710.0019
SER 4720.0019
LEU 4730.0015
GLU 4740.0016
VAL 4750.0013
LEU 4760.0008
LYS 4770.0006
MET 4780.0008
ALA 4790.0012
GLY 4800.0016
ASN 4810.0015
SER 4820.0014
PHE 4830.0010
GLN 4840.0009
GLU 4850.0012
ASN 4860.0014
PHE 4870.0013
LEU 4880.0010
PRO 4890.0012
ASP 4900.0014
ILE 4910.0012
PHE 4920.0012
THR 4930.0015
GLU 4940.0015
LEU 4950.0016
ARG 4960.0020
ASN 4970.0020
LEU 4980.0016
THR 4990.0018
PHE 5000.0013
LEU 5010.0010
ASP 5020.0008
LEU 5030.0009
SER 5040.0011
GLN 5050.0014
CYS 5060.0011
GLN 5070.0015
LEU 5080.0015
GLU 5090.0019
GLN 5100.0020
LEU 5110.0019
SER 5120.0023
PRO 5130.0027
THR 5140.0027
ALA 5150.0021
PHE 5160.0021
ASN 5170.0026
SER 5180.0027
LEU 5190.0023
SER 5200.0028
SER 5210.0026
LEU 5220.0022
GLN 5230.0020
VAL 5240.0014
LEU 5250.0011
ASN 5260.0008
MET 5270.0009
SER 5280.0011
HIS 5290.0015
ASN 5300.0014
ASN 5310.0019
PHE 5320.0024
PHE 5330.0032
SER 5340.0032
LEU 5350.0026
ASP 5360.0030
THR 5370.0028
PHE 5380.0035
PRO 5390.0030
TYR 5400.0027
LYS 5410.0035
CYS 5420.0035
LEU 5430.0029
ASN 5440.0034
SER 5450.0030
LEU 5460.0023
GLN 5470.0021
VAL 5480.0014
LEU 5490.0009
ASP 5500.0008
TYR 5510.0012
SER 5520.0018
LEU 5530.0024
ASN 5540.0021
HIS 5550.0029
ILE 5560.0029
MET 5570.0042
THR 5580.0042
SER 5590.0040
LYS 5600.0048
LYS 5610.0047
GLN 5620.0048
GLU 5630.0044
LEU 5640.0033
GLN 5650.0034
HIS 5660.0036
PHE 5670.0026
PRO 5680.0030
SER 5690.0031
SER 5700.0030
LEU 5710.0020
ALA 5720.0020
PHE 5730.0015
LEU 5740.0007
ASN 5750.0014
LEU 5760.0017
THR 5770.0027
GLN 5780.0034
ASN 5790.0031
ASP 5800.0041
PHE 5810.0042
ALA 5820.0058
CYS 5830.0062
THR 5840.0073
CYS 5850.0075
GLU 5860.0075
HIS 5870.0060
GLN 5880.0056
SER 5890.0050
PHE 5900.0039
LEU 5910.0041
GLN 5920.0037
TRP 5930.0028
ILE 5940.0022
LYS 5950.0024
ASP 5960.0016
GLN 5970.0006
ARG 5980.0012
GLN 5990.0014
LEU 6000.0012
LEU 6010.0014
VAL 6020.0030
GLU 6030.0037
VAL 6040.0037
GLU 6050.0051
ARG 6060.0043
MET 6070.0038
GLU 6080.0050
CYS 6090.0057
ALA 6100.0061
THR 6110.0069
PRO 6120.0080
SER 6130.0088
ASP 6140.0094
LYS 6150.0081
GLN 6160.0075
GLY 6170.0073
MET 6180.0070
PRO 6190.0056
VAL 6200.0046
LEU 6210.0042
SER 6220.0058
LEU 6230.0062
ASN 6240.0068
ILE 6250.0063
THR 6260.0076
CYS 6270.0096
GLU 10.0118
ALA 20.0110
ALA 30.0205
ALA 40.0164
LYS 50.0079
MET 60.0148
GLN 70.0154
ARG 80.0098
LEU 90.0123
VAL 100.0142
LEU 110.0086
LEU 120.0105
LEU 130.0125
ALA 140.0080
ILE 150.0100
SER 160.0101
LEU 170.0077
LEU 180.0062
LEU 190.0093
TYR 200.0089
GLN 210.0059
ASP 220.0055
LEU 230.0063
PRO 240.0054
VAL 250.0061
ARG 260.0060
SER 270.0048
GLU 280.0052
PHE 290.0052
GLU 300.0038
LEU 310.0029
ASP 320.0039
ARG 330.0038
ILE 340.0031
CYS 350.0037
GLY 360.0038
TYR 370.0029
GLY 380.0028
THR 390.0036
ALA 400.0041
ARG 410.0038
CYS 420.0046
ARG 430.0048
LYS 440.0058
LYS 450.0058
CYS 460.0051
ARG 470.0044
SER 480.0048
GLN 490.0046
GLU 500.0049
TYR 510.0060
ARG 520.0065
ILE 530.0068
GLY 540.0071
ARG 550.0070
CYS 560.0059
PRO 570.0060
ASN 580.0064
THR 590.0074
TYR 600.0067
ALA 610.0063
CYS 620.0055
CYS 630.0052
LEU 640.0050
ARG 650.0048
LYS 660.0055
TRP 670.0056
ASP 680.0048
GLU 690.0045
SER 700.0043
LEU 710.0053
LEU 720.0055
ASN 730.0047
ARG 740.0053
THR 750.0064
LYS 760.0058
PRO 770.0065
GLU 780.0064
ALA 790.0069
ALA 800.0076
ALA 810.0067
LYS 820.0062
LYS 830.0075
GLU 840.0063
MET 850.0076
ASN 860.0062
LEU 870.0054
SER 880.0049
VAL 890.0042
GLY 900.0038
LEU 910.0032
GLY 920.0026
GLY 930.0035
GLY 940.0045
SER 950.0048
ASN 960.0048
LEU 970.0050
SER 980.0054
VAL 990.0056
GLY 1000.0061
LEU 1010.0047
GLY 1020.0057
GLU 1030.0087
ILE 1040.0107
GLY 1050.0140
GLY 1060.0154
GLY 1070.0108
SER 1080.0070
LYS 1090.0040
LEU 1100.0032
LEU 1110.0057
ASP 1120.0064
ILE 1130.0057
ASN 1140.0065
LEU 1150.0057
GLY 1160.0058
ARG 1170.0054
GLY 1180.0036
GLY 1190.0024
GLY 1200.0014
SER 1210.0014
MET 1220.0013
VAL 1230.0024
ASP 1240.0027
LEU 1250.0040
THR 1260.0052
PHE 1270.0066
GLY 1280.0082
GLY 1290.0086
VAL 1300.0102
GLY 1310.0106
GLY 1320.0108
GLY 1330.0090
SER 1340.0094
THR 1350.0078
PHE 1360.0069
THR 1370.0070
PHE 1380.0059
PHE 1390.0070
PRO 1400.0063
LEU 1410.0074
VAL 1420.0078
ILE 1430.0078
GLY 1440.0088
GLY 1450.0080
GLY 1460.0076
SER 1470.0074
ASP 1480.0061
ALA 1490.0070
MET 1500.0063
TYR 1510.0064
LEU 1520.0065
GLY 1530.0076
PHE 1540.0078
ALA 1550.0088
ALA 1560.0106
GLY 1570.0105
GLY 1580.0111
GLY 1590.0091
SER 1600.0078
ALA 1610.0056
GLY 1620.0056
GLY 1630.0047
GLU 1640.0049
ASN 1650.0033
HIS 1660.0025
VAL 1670.0019
ALA 1680.0011
PHE 1690.0021
GLY 1700.0034
PRO 1710.0080
GLY 1720.0100
PRO 1730.0111
GLY 1740.0085
VAL 1750.0053
ASP 1760.0034
LEU 1770.0028
THR 1780.0013
PHE 1790.0017
GLY 1800.0016
GLY 1810.0026
VAL 1820.0030
GLN 1830.0041
PHE 1840.0055
ALA 1850.0072
MET 1860.0082
VAL 1870.0117
ASN 1880.0142
ASN 1890.0172
GLY 1900.0195
PRO 1910.0153
GLY 1920.0113
PRO 1930.0098
GLY 1940.0030
GLU 1950.0070
SER 1960.0096
PHE 1970.0171
THR 1980.0144
ALA 1990.0130
GLN 2000.0186
PRO 2010.0268
ALA 2020.0201
ASP 2030.0213
MET 2040.0332
GLN 2050.0278
ALA 2060.0448
GLY 2070.0165
ILE 2080.0194
LYS 2090.0349
GLY 2100.0285
PRO 2110.0079
GLY 2120.0076
PRO 2130.0172
GLY 2140.0224
GLY 2150.0244
SER 2160.0211
ILE 2170.0136
GLN 2180.0148
VAL 2190.0102
ILE 2200.0142
ASN 2210.0097
GLY 2220.0106
SER 2230.0122
THR 2240.0117
ILE 2250.0130
GLY 2260.0175
THR 2270.0166
GLY 2280.0130
SER 2290.0090
LYS 2300.0051
LYS 2310.0043
THR 2320.0047
ILE 2330.0047
LEU 2340.0077
ILE 2350.0070
TYR 2360.0073
SER 2370.0069
ILE 2380.0062
ILE 2390.0060
GLY 2400.0053
VAL 2410.0042
LYS 2420.0034
LYS 2430.0034
GLY 2440.0044
THR 2450.0045
LEU 2460.0051
ALA 2470.0056
TRP 2480.0070
ALA 2490.0076
ARG 2500.0090
THR 2510.0102
GLY 2520.0100
PHE 2530.0090
SER 2540.0091
PRO 2550.0081
ALA 2560.0085
LYS 2570.0078
LYS 2580.0066
LEU 2590.0079
ASN 2600.0093
ALA 2610.0091
GLY 2620.0074
VAL 2630.0078
VAL 2640.0042
ARG 2650.0050
VAL 2660.0041
PHE 2670.0054
PHE 2680.0046
LEU 2690.0065
ASN 2700.0070
GLN 2710.0055
LYS 2720.0055
LYS 2730.0063
ALA 2740.0055
LYS 2750.0044
ASP 2760.0059
VAL 2770.0052
LEU 2780.0024
ARG 2790.0035
LYS 2800.0056
THR 2810.0054
SER 2820.0260
ARG 2830.0297
PRO 2840.0473
MET 2850.0808
VAL 2860.0989
ASP 2870.0314
LEU 2880.0878
THR 2890.0277
PHE 2900.0404
GLY 2910.1345
GLY 2920.1602

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.