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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 33  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0583
GLU 270.0168
PRO 280.0144
CYS 290.0144
VAL 300.0175
GLU 310.0202
VAL 320.0217
VAL 330.0233
PRO 340.0238
ASN 350.0217
ILE 360.0196
THR 370.0177
TYR 380.0152
GLN 390.0136
CYS 400.0101
MET 410.0096
GLU 420.0080
LEU 430.0069
ASN 440.0044
PHE 450.0049
TYR 460.0056
LYS 470.0069
ILE 480.0071
PRO 490.0102
ASP 500.0137
ASN 510.0162
LEU 520.0158
PRO 530.0181
PHE 540.0170
SER 550.0178
THR 560.0154
LYS 570.0141
ASN 580.0130
LEU 590.0104
ASP 600.0095
LEU 610.0064
SER 620.0071
PHE 630.0069
ASN 640.0046
PRO 650.0048
LEU 660.0045
ARG 670.0063
HIS 680.0069
LEU 690.0061
GLY 700.0081
SER 710.0090
TYR 720.0093
SER 730.0076
PHE 740.0077
PHE 750.0106
SER 760.0118
PHE 770.0112
PRO 780.0118
GLU 790.0126
LEU 800.0102
GLN 810.0102
VAL 820.0090
LEU 830.0068
ASP 840.0072
LEU 850.0054
SER 860.0076
ARG 870.0073
CYS 880.0055
GLU 890.0070
ILE 900.0062
GLN 910.0082
THR 920.0080
ILE 930.0066
GLU 940.0079
ASP 950.0083
GLY 960.0075
ALA 970.0062
TYR 980.0052
GLN 990.0069
SER 1000.0082
LEU 1010.0069
SER 1020.0067
HIS 1030.0077
LEU 1040.0058
SER 1050.0070
THR 1060.0070
LEU 1070.0057
ILE 1080.0068
LEU 1090.0066
THR 1100.0084
GLY 1110.0091
ASN 1120.0079
PRO 1130.0097
ILE 1140.0087
GLN 1150.0106
SER 1160.0098
LEU 1170.0080
ALA 1180.0082
LEU 1190.0078
GLY 1200.0069
ALA 1210.0058
PHE 1220.0048
SER 1230.0051
GLY 1240.0050
LEU 1250.0042
SER 1260.0046
SER 1270.0048
LEU 1280.0046
GLN 1290.0056
LYS 1300.0063
LEU 1310.0062
VAL 1320.0073
ALA 1330.0076
VAL 1340.0089
GLU 1350.0097
THR 1360.0088
ASN 1370.0105
LEU 1380.0095
ALA 1390.0098
SER 1400.0087
LEU 1410.0075
GLU 1420.0078
ASN 1430.0082
PHE 1440.0073
PRO 1450.0066
ILE 1460.0055
GLY 1470.0053
HIS 1480.0047
LEU 1490.0043
LYS 1500.0041
THR 1510.0042
LEU 1520.0047
LYS 1530.0051
GLU 1540.0060
LEU 1550.0065
ASN 1560.0076
VAL 1570.0080
ALA 1580.0091
HIS 1590.0103
ASN 1600.0102
LEU 1610.0108
ILE 1620.0090
GLN 1630.0090
SER 1640.0080
PHE 1650.0069
LYS 1660.0068
LEU 1670.0064
PRO 1680.0065
GLU 1690.0060
TYR 1700.0058
PHE 1710.0053
SER 1720.0049
ASN 1730.0046
LEU 1740.0046
THR 1750.0041
ASN 1760.0041
LEU 1770.0045
GLU 1780.0046
HIS 1790.0057
LEU 1800.0064
ASP 1810.0075
LEU 1820.0077
SER 1830.0083
SER 1840.0093
ASN 1850.0093
LYS 1860.0095
ILE 1870.0075
GLN 1880.0070
SER 1890.0061
ILE 1900.0054
TYR 1910.0053
CYS 1920.0047
THR 1930.0055
ASP 1940.0057
LEU 1950.0048
ARG 1960.0049
VAL 1970.0051
LEU 1980.0043
HIS 1990.0040
GLN 2000.0044
MET 2010.0039
PRO 2020.0033
LEU 2030.0031
LEU 2040.0037
ASN 2050.0037
LEU 2060.0043
SER 2070.0051
LEU 2080.0056
ASP 2090.0063
LEU 2100.0064
SER 2110.0069
LEU 2120.0072
ASN 2130.0069
PRO 2140.0066
MET 2150.0057
ASN 2160.0053
PHE 2170.0045
ILE 2180.0039
GLN 2190.0038
PRO 2200.0027
GLY 2210.0026
ALA 2220.0035
PHE 2230.0029
LYS 2240.0022
GLU 2250.0019
ILE 2260.0025
ARG 2270.0023
LEU 2280.0030
HIS 2290.0034
LYS 2300.0039
LEU 2310.0039
THR 2320.0050
LEU 2330.0046
ARG 2340.0052
ASN 2350.0052
ASN 2360.0047
PHE 2370.0041
ASP 2380.0039
SER 2390.0029
LEU 2400.0024
ASN 2410.0013
VAL 2420.0027
MET 2430.0028
LYS 2440.0017
THR 2450.0018
CYS 2460.0028
ILE 2470.0022
GLN 2480.0012
GLY 2490.0022
LEU 2500.0022
ALA 2510.0011
GLY 2520.0008
LEU 2530.0015
GLU 2540.0016
VAL 2550.0026
HIS 2560.0032
ARG 2570.0037
LEU 2580.0034
VAL 2590.0042
LEU 2600.0039
GLY 2610.0045
GLU 2620.0050
PHE 2630.0060
ARG 2640.0065
ASN 2650.0066
GLU 2660.0054
GLY 2670.0048
ASN 2680.0044
LEU 2690.0036
GLU 2700.0033
LYS 2710.0033
PHE 2720.0038
ASP 2730.0037
LYS 2740.0038
SER 2750.0030
ALA 2760.0029
LEU 2770.0030
GLU 2780.0025
GLY 2790.0017
LEU 2800.0023
CYS 2810.0022
ASN 2820.0010
LEU 2830.0013
THR 2840.0018
ILE 2850.0029
GLU 2860.0036
GLU 2870.0042
PHE 2880.0042
ARG 2890.0047
LEU 2900.0047
ALA 2910.0051
TYR 2920.0055
LEU 2930.0050
ASP 2940.0052
TYR 2950.0049
TYR 2960.0055
LEU 2970.0055
ASP 2980.0058
GLY 2990.0057
ILE 3000.0053
ILE 3010.0052
ASP 3020.0046
LEU 3030.0045
PHE 3040.0045
ASN 3050.0044
CYS 3060.0039
LEU 3070.0043
THR 3080.0046
ASN 3090.0046
VAL 3100.0047
SER 3110.0051
SER 3120.0052
PHE 3130.0052
SER 3140.0054
LEU 3150.0054
VAL 3160.0055
SER 3170.0057
VAL 3180.0056
THR 3190.0058
ILE 3200.0058
GLU 3210.0060
ARG 3220.0056
VAL 3230.0054
LYS 3240.0054
ASP 3250.0054
PHE 3260.0053
SER 3270.0052
TYR 3280.0052
ASN 3290.0054
PHE 3300.0054
GLY 3310.0055
TRP 3320.0057
GLN 3330.0059
HIS 3340.0057
LEU 3350.0054
GLU 3360.0053
LEU 3370.0055
VAL 3380.0055
ASN 3390.0054
CYS 3400.0054
LYS 3410.0053
PHE 3420.0053
GLY 3430.0051
GLN 3440.0048
PHE 3450.0046
PRO 3460.0048
THR 3470.0048
LEU 3480.0052
LYS 3490.0054
LEU 3500.0058
LYS 3510.0060
SER 3520.0064
LEU 3530.0059
LYS 3540.0060
ARG 3550.0056
LEU 3560.0051
THR 3570.0051
PHE 3580.0048
THR 3590.0050
SER 3600.0051
ASN 3610.0049
LYS 3620.0048
GLY 3630.0046
GLY 3640.0042
ASN 3650.0039
ALA 3660.0034
PHE 3670.0034
SER 3680.0037
GLU 3690.0040
VAL 3700.0046
ASP 3710.0051
LEU 3720.0056
PRO 3730.0061
SER 3740.0064
LEU 3750.0057
GLU 3760.0056
PHE 3770.0051
LEU 3780.0045
ASP 3790.0045
LEU 3800.0040
SER 3810.0043
ARG 3820.0048
ASN 3830.0044
GLY 3840.0042
LEU 3850.0033
SER 3860.0029
PHE 3870.0030
LYS 3880.0032
GLY 3890.0035
CYS 3900.0030
CYS 3910.0029
SER 3920.0035
GLN 3930.0042
SER 3940.0045
ASP 3950.0037
PHE 3960.0042
GLY 3970.0051
THR 3980.0051
ILE 3990.0053
SER 4000.0054
LEU 4010.0047
LYS 4020.0044
TYR 4030.0043
LEU 4040.0036
ASP 4050.0039
LEU 4060.0034
SER 4070.0044
PHE 4080.0053
ASN 4090.0046
GLY 4100.0047
VAL 4110.0046
ILE 4120.0041
THR 4130.0044
MET 4140.0042
SER 4150.0045
SER 4160.0040
ASN 4170.0038
PHE 4180.0032
LEU 4190.0037
GLY 4200.0039
LEU 4210.0034
GLU 4220.0031
GLN 4230.0035
LEU 4240.0033
GLU 4250.0039
HIS 4260.0043
LEU 4270.0037
ASP 4280.0043
PHE 4290.0046
GLN 4300.0057
HIS 4310.0064
SER 4320.0055
ASN 4330.0060
LEU 4340.0055
LYS 4350.0060
GLN 4360.0062
MET 4370.0057
SER 4380.0065
GLU 4390.0064
PHE 4400.0058
SER 4410.0051
VAL 4420.0045
PHE 4430.0041
LEU 4440.0041
SER 4450.0034
LEU 4460.0033
ARG 4470.0031
ASN 4480.0033
LEU 4490.0037
ILE 4500.0046
TYR 4510.0051
LEU 4520.0048
ASP 4530.0054
ILE 4540.0058
SER 4550.0065
HIS 4560.0072
THR 4570.0067
HIS 4580.0074
THR 4590.0070
ARG 4600.0076
VAL 4610.0071
ALA 4620.0069
PHE 4630.0065
ASN 4640.0063
GLY 4650.0057
ILE 4660.0056
PHE 4670.0055
ASN 4680.0051
GLY 4690.0045
LEU 4700.0048
SER 4710.0048
SER 4720.0049
LEU 4730.0053
GLU 4740.0058
VAL 4750.0060
LEU 4760.0061
LYS 4770.0061
MET 4780.0065
ALA 4790.0069
GLY 4800.0073
ASN 4810.0073
SER 4820.0072
PHE 4830.0070
GLN 4840.0073
GLU 4850.0071
ASN 4860.0067
PHE 4870.0061
LEU 4880.0062
PRO 4890.0064
ASP 4900.0064
ILE 4910.0067
PHE 4920.0063
THR 4930.0063
GLU 4940.0061
LEU 4950.0062
ARG 4960.0063
ASN 4970.0065
LEU 4980.0065
THR 4990.0065
PHE 5000.0065
LEU 5010.0065
ASP 5020.0064
LEU 5030.0065
SER 5040.0065
GLN 5050.0069
CYS 5060.0069
GLN 5070.0063
LEU 5080.0059
GLU 5090.0053
GLN 5100.0053
LEU 5110.0055
SER 5120.0059
PRO 5130.0057
THR 5140.0064
ALA 5150.0065
PHE 5160.0064
ASN 5170.0065
SER 5180.0071
LEU 5190.0069
SER 5200.0070
SER 5210.0072
LEU 5220.0071
GLN 5230.0067
VAL 5240.0065
LEU 5250.0063
ASN 5260.0062
MET 5270.0056
SER 5280.0054
HIS 5290.0055
ASN 5300.0052
ASN 5310.0046
PHE 5320.0032
PHE 5330.0019
SER 5340.0020
LEU 5350.0021
ASP 5360.0035
THR 5370.0037
PHE 5380.0051
PRO 5390.0058
TYR 5400.0055
LYS 5410.0058
CYS 5420.0067
LEU 5430.0066
ASN 5440.0069
SER 5450.0071
LEU 5460.0063
GLN 5470.0062
VAL 5480.0059
LEU 5490.0051
ASP 5500.0051
TYR 5510.0040
SER 5520.0045
LEU 5530.0042
ASN 5540.0030
HIS 5550.0014
ILE 5560.0008
MET 5570.0019
THR 5580.0025
SER 5590.0027
LYS 5600.0043
LYS 5610.0048
GLN 5620.0046
GLU 5630.0045
LEU 5640.0025
GLN 5650.0026
HIS 5660.0041
PHE 5670.0038
PRO 5680.0049
SER 5690.0047
SER 5700.0057
LEU 5710.0048
ALA 5720.0052
PHE 5730.0053
LEU 5740.0039
ASN 5750.0047
LEU 5760.0034
THR 5770.0050
GLN 5780.0048
ASN 5790.0028
ASP 5800.0027
PHE 5810.0034
ALA 5820.0054
CYS 5830.0074
THR 5840.0089
CYS 5850.0102
GLU 5860.0094
HIS 5870.0066
GLN 5880.0072
SER 5890.0058
PHE 5900.0036
LEU 5910.0049
GLN 5920.0052
TRP 5930.0029
ILE 5940.0032
LYS 5950.0050
ASP 5960.0035
GLN 5970.0025
ARG 5980.0045
GLN 5990.0050
LEU 6000.0042
LEU 6010.0047
VAL 6020.0070
GLU 6030.0078
VAL 6040.0075
GLU 6050.0089
ARG 6060.0076
MET 6070.0061
GLU 6080.0070
CYS 6090.0069
ALA 6100.0063
THR 6110.0068
PRO 6120.0096
SER 6130.0108
ASP 6140.0127
LYS 6150.0110
GLN 6160.0096
GLY 6170.0098
MET 6180.0103
PRO 6190.0089
VAL 6200.0071
LEU 6210.0076
SER 6220.0104
LEU 6230.0100
ASN 6240.0115
ILE 6250.0104
THR 6260.0127
CYS 6270.0143
GLU 10.0146
ALA 20.0113
ALA 30.0156
ALA 40.0152
LYS 50.0113
MET 60.0115
GLN 70.0126
ARG 80.0123
LEU 90.0119
VAL 100.0111
LEU 110.0105
LEU 120.0120
LEU 130.0118
ALA 140.0099
ILE 150.0120
SER 160.0113
LEU 170.0108
LEU 180.0101
LEU 190.0106
TYR 200.0107
GLN 210.0095
ASP 220.0085
LEU 230.0080
PRO 240.0087
VAL 250.0092
ARG 260.0086
SER 270.0076
GLU 280.0082
PHE 290.0080
GLU 300.0068
LEU 310.0059
ASP 320.0066
ARG 330.0062
ILE 340.0056
CYS 350.0060
GLY 360.0049
TYR 370.0043
GLY 380.0043
THR 390.0045
ALA 400.0052
ARG 410.0051
CYS 420.0057
ARG 430.0054
LYS 440.0060
LYS 450.0060
CYS 460.0055
ARG 470.0049
SER 480.0065
GLN 490.0066
GLU 500.0062
TYR 510.0081
ARG 520.0084
ILE 530.0086
GLY 540.0091
ARG 550.0091
CYS 560.0081
PRO 570.0087
ASN 580.0085
THR 590.0091
TYR 600.0080
ALA 610.0076
CYS 620.0067
CYS 630.0059
LEU 640.0060
ARG 650.0061
LYS 660.0086
TRP 670.0098
ASP 680.0091
GLU 690.0096
SER 700.0097
LEU 710.0106
LEU 720.0107
ASN 730.0098
ARG 740.0109
THR 750.0120
LYS 760.0090
PRO 770.0077
GLU 780.0077
ALA 790.0059
ALA 800.0060
ALA 810.0101
LYS 820.0055
LYS 830.0077
GLU 840.0069
MET 850.0064
ASN 860.0090
LEU 870.0065
SER 880.0079
VAL 890.0064
GLY 900.0074
LEU 910.0075
GLY 920.0080
GLY 930.0130
GLY 940.0164
SER 950.0152
ASN 960.0136
LEU 970.0119
SER 980.0117
VAL 990.0101
GLY 1000.0105
LEU 1010.0098
GLY 1020.0169
GLU 1030.0224
ILE 1040.0345
GLY 1050.0439
GLY 1060.0552
GLY 1070.0445
SER 1080.0361
LYS 1090.0230
LEU 1100.0152
LEU 1110.0114
ASP 1120.0155
ILE 1130.0142
ASN 1140.0190
LEU 1150.0170
GLY 1160.0200
ARG 1170.0215
GLY 1180.0163
GLY 1190.0155
GLY 1200.0124
SER 1210.0090
MET 1220.0079
VAL 1230.0072
ASP 1240.0061
LEU 1250.0060
THR 1260.0073
PHE 1270.0077
GLY 1280.0092
GLY 1290.0097
VAL 1300.0105
GLY 1310.0120
GLY 1320.0135
GLY 1330.0118
SER 1340.0116
THR 1350.0091
PHE 1360.0066
THR 1370.0054
PHE 1380.0034
PHE 1390.0025
PRO 1400.0040
LEU 1410.0079
VAL 1420.0123
ILE 1430.0161
GLY 1440.0201
GLY 1450.0256
GLY 1460.0274
SER 1470.0257
ASP 1480.0232
ALA 1490.0208
MET 1500.0166
TYR 1510.0124
LEU 1520.0098
GLY 1530.0076
PHE 1540.0077
ALA 1550.0084
ALA 1560.0120
GLY 1570.0121
GLY 1580.0145
GLY 1590.0131
SER 1600.0124
ALA 1610.0102
GLY 1620.0091
GLY 1630.0068
GLU 1640.0060
ASN 1650.0054
HIS 1660.0057
VAL 1670.0065
ALA 1680.0076
PHE 1690.0091
GLY 1700.0103
PRO 1710.0172
GLY 1720.0176
PRO 1730.0170
GLY 1740.0131
VAL 1750.0094
ASP 1760.0073
LEU 1770.0055
THR 1780.0052
PHE 1790.0050
GLY 1800.0058
GLY 1810.0060
VAL 1820.0068
GLN 1830.0067
PHE 1840.0063
ALA 1850.0077
MET 1860.0064
VAL 1870.0060
ASN 1880.0055
ASN 1890.0061
GLY 1900.0097
PRO 1910.0241
GLY 1920.0309
PRO 1930.0277
GLY 1940.0185
GLU 1950.0140
SER 1960.0098
PHE 1970.0131
THR 1980.0307
ALA 1990.0147
GLN 2000.0324
PRO 2010.0185
ALA 2020.0209
ASP 2030.0376
MET 2040.0436
GLN 2050.0457
ALA 2060.0583
GLY 2070.0311
ILE 2080.0291
LYS 2090.0498
GLY 2100.0516
PRO 2110.0166
GLY 2120.0130
PRO 2130.0096
GLY 2140.0280
GLY 2150.0432
SER 2160.0513
ILE 2170.0519
GLN 2180.0398
VAL 2190.0454
ILE 2200.0361
ASN 2210.0340
GLY 2220.0346
SER 2230.0316
THR 2240.0236
ILE 2250.0278
GLY 2260.0327
THR 2270.0308
GLY 2280.0301
SER 2290.0261
LYS 2300.0206
LYS 2310.0130
THR 2320.0110
ILE 2330.0121
LEU 2340.0163
ILE 2350.0184
TYR 2360.0193
SER 2370.0182
ILE 2380.0167
ILE 2390.0145
GLY 2400.0137
VAL 2410.0113
LYS 2420.0088
LYS 2430.0073
GLY 2440.0079
THR 2450.0095
LEU 2460.0147
ALA 2470.0136
TRP 2480.0139
ALA 2490.0131
ARG 2500.0139
THR 2510.0168
GLY 2520.0139
PHE 2530.0089
SER 2540.0080
PRO 2550.0085
ALA 2560.0109
LYS 2570.0161
LYS 2580.0188
LEU 2590.0194
ASN 2600.0237
ALA 2610.0183
GLY 2620.0116
VAL 2630.0116
VAL 2640.0104
ARG 2650.0153
VAL 2660.0183
PHE 2670.0152
PHE 2680.0163
LEU 2690.0127
ASN 2700.0124
GLN 2710.0109
LYS 2720.0104
LYS 2730.0105
ALA 2740.0095
LYS 2750.0079
ASP 2760.0108
VAL 2770.0091
LEU 2780.0064
ARG 2790.0081
LYS 2800.0109
THR 2810.0121
SER 2820.0122
ARG 2830.0108
PRO 2840.0106
MET 2850.0107
VAL 2860.0178
ASP 2870.0147
LEU 2880.0128
THR 2890.0122
PHE 2900.0119
GLY 2910.0172
GLY 2920.0194

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.