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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 34  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.1003
GLU 270.0175
PRO 280.0138
CYS 290.0135
VAL 300.0160
GLU 310.0197
VAL 320.0212
VAL 330.0239
PRO 340.0249
ASN 350.0233
ILE 360.0211
THR 370.0181
TYR 380.0149
GLN 390.0121
CYS 400.0087
MET 410.0068
GLU 420.0047
LEU 430.0050
ASN 440.0055
PHE 450.0073
TYR 460.0098
LYS 470.0107
ILE 480.0097
PRO 490.0122
ASP 500.0163
ASN 510.0182
LEU 520.0174
PRO 530.0202
PHE 540.0195
SER 550.0203
THR 560.0170
LYS 570.0157
ASN 580.0136
LEU 590.0103
ASP 600.0083
LEU 610.0051
SER 620.0053
PHE 630.0054
ASN 640.0046
PRO 650.0072
LEU 660.0072
ARG 670.0087
HIS 680.0096
LEU 690.0085
GLY 700.0108
SER 710.0114
TYR 720.0118
SER 730.0102
PHE 740.0098
PHE 750.0132
SER 760.0144
PHE 770.0133
PRO 780.0143
GLU 790.0150
LEU 800.0119
GLN 810.0118
VAL 820.0095
LEU 830.0067
ASP 840.0063
LEU 850.0045
SER 860.0067
ARG 870.0069
CYS 880.0055
GLU 890.0080
ILE 900.0073
GLN 910.0097
THR 920.0095
ILE 930.0077
GLU 940.0094
ASP 950.0094
GLY 960.0089
ALA 970.0079
TYR 980.0067
GLN 990.0087
SER 1000.0104
LEU 1010.0088
SER 1020.0091
HIS 1030.0100
LEU 1040.0072
SER 1050.0083
THR 1060.0074
LEU 1070.0055
ILE 1080.0063
LEU 1090.0062
THR 1100.0081
GLY 1110.0091
ASN 1120.0078
PRO 1130.0100
ILE 1140.0090
GLN 1150.0112
SER 1160.0105
LEU 1170.0079
ALA 1180.0082
LEU 1190.0072
GLY 1200.0070
ALA 1210.0060
PHE 1220.0047
SER 1230.0055
GLY 1240.0062
LEU 1250.0054
SER 1260.0064
SER 1270.0066
LEU 1280.0055
GLN 1290.0067
LYS 1300.0068
LEU 1310.0061
VAL 1320.0072
ALA 1330.0073
VAL 1340.0089
GLU 1350.0098
THR 1360.0087
ASN 1370.0099
LEU 1380.0085
ALA 1390.0084
SER 1400.0071
LEU 1410.0061
GLU 1420.0060
ASN 1430.0066
PHE 1440.0059
PRO 1450.0053
ILE 1460.0045
GLY 1470.0044
HIS 1480.0041
LEU 1490.0042
LYS 1500.0045
THR 1510.0051
LEU 1520.0051
LYS 1530.0058
GLU 1540.0064
LEU 1550.0064
ASN 1560.0075
VAL 1570.0075
ALA 1580.0087
HIS 1590.0099
ASN 1600.0094
LEU 1610.0097
ILE 1620.0074
GLN 1630.0071
SER 1640.0062
PHE 1650.0055
LYS 1660.0053
LEU 1670.0052
PRO 1680.0050
GLU 1690.0046
TYR 1700.0045
PHE 1710.0045
SER 1720.0042
ASN 1730.0041
LEU 1740.0043
THR 1750.0045
ASN 1760.0048
LEU 1770.0045
GLU 1780.0051
HIS 1790.0058
LEU 1800.0060
ASP 1810.0071
LEU 1820.0068
SER 1830.0075
SER 1840.0082
ASN 1850.0080
LYS 1860.0079
ILE 1870.0060
GLN 1880.0053
SER 1890.0045
ILE 1900.0040
TYR 1910.0039
CYS 1920.0035
THR 1930.0042
ASP 1940.0044
LEU 1950.0038
ARG 1960.0039
VAL 1970.0042
LEU 1980.0039
HIS 1990.0036
GLN 2000.0038
MET 2010.0037
PRO 2020.0031
LEU 2030.0032
LEU 2040.0037
ASN 2050.0039
LEU 2060.0042
SER 2070.0051
LEU 2080.0051
ASP 2090.0056
LEU 2100.0055
SER 2110.0059
LEU 2120.0058
ASN 2130.0056
PRO 2140.0052
MET 2150.0043
ASN 2160.0040
PHE 2170.0031
ILE 2180.0028
GLN 2190.0028
PRO 2200.0019
GLY 2210.0018
ALA 2220.0025
PHE 2230.0022
LYS 2240.0015
GLU 2250.0014
ILE 2260.0022
ARG 2270.0024
LEU 2280.0031
HIS 2290.0038
LYS 2300.0039
LEU 2310.0035
THR 2320.0042
LEU 2330.0037
ARG 2340.0038
ASN 2350.0036
ASN 2360.0036
PHE 2370.0026
ASP 2380.0027
SER 2390.0017
LEU 2400.0007
ASN 2410.0017
VAL 2420.0019
MET 2430.0011
LYS 2440.0005
THR 2450.0014
CYS 2460.0018
ILE 2470.0009
GLN 2480.0006
GLY 2490.0015
LEU 2500.0014
ALA 2510.0005
GLY 2520.0005
LEU 2530.0014
GLU 2540.0022
VAL 2550.0029
HIS 2560.0038
ARG 2570.0039
LEU 2580.0031
VAL 2590.0033
LEU 2600.0026
GLY 2610.0027
GLU 2620.0026
PHE 2630.0032
ARG 2640.0026
ASN 2650.0032
GLU 2660.0033
GLY 2670.0026
ASN 2680.0015
LEU 2690.0009
GLU 2700.0013
LYS 2710.0013
PHE 2720.0012
ASP 2730.0021
LYS 2740.0027
SER 2750.0022
ALA 2760.0013
LEU 2770.0017
GLU 2780.0020
GLY 2790.0013
LEU 2800.0020
CYS 2810.0026
ASN 2820.0016
LEU 2830.0018
THR 2840.0028
ILE 2850.0034
GLU 2860.0044
GLU 2870.0046
PHE 2880.0038
ARG 2890.0036
LEU 2900.0029
ALA 2910.0030
TYR 2920.0023
LEU 2930.0014
ASP 2940.0006
TYR 2950.0009
TYR 2960.0018
LEU 2970.0025
ASP 2980.0033
GLY 2990.0037
ILE 3000.0038
ILE 3010.0044
ASP 3020.0042
LEU 3030.0033
PHE 3040.0037
ASN 3050.0044
CYS 3060.0040
LEU 3070.0043
THR 3080.0052
ASN 3090.0059
VAL 3100.0054
SER 3110.0062
SER 3120.0056
PHE 3130.0048
SER 3140.0043
LEU 3150.0035
VAL 3160.0032
SER 3170.0025
VAL 3180.0023
THR 3190.0021
ILE 3200.0029
GLU 3210.0033
ARG 3220.0041
VAL 3230.0043
LYS 3240.0051
ASP 3250.0050
PHE 3260.0051
SER 3270.0061
TYR 3280.0063
ASN 3290.0069
PHE 3300.0064
GLY 3310.0071
TRP 3320.0065
GLN 3330.0071
HIS 3340.0063
LEU 3350.0052
GLU 3360.0045
LEU 3370.0040
VAL 3380.0035
ASN 3390.0028
CYS 3400.0026
LYS 3410.0022
PHE 3420.0029
GLY 3430.0032
GLN 3440.0036
PHE 3450.0037
PRO 3460.0043
THR 3470.0053
LEU 3480.0056
LYS 3490.0068
LEU 3500.0072
LYS 3510.0084
SER 3520.0085
LEU 3530.0073
LYS 3540.0076
ARG 3550.0066
LEU 3560.0054
THR 3570.0047
PHE 3580.0038
THR 3590.0036
SER 3600.0032
ASN 3610.0027
LYS 3620.0024
GLY 3630.0025
GLY 3640.0028
ASN 3650.0028
ALA 3660.0033
PHE 3670.0037
SER 3680.0047
GLU 3690.0055
VAL 3700.0059
ASP 3710.0070
LEU 3720.0074
PRO 3730.0085
SER 3740.0088
LEU 3750.0075
GLU 3760.0075
PHE 3770.0064
LEU 3780.0052
ASP 3790.0046
LEU 3800.0036
SER 3810.0037
ARG 3820.0036
ASN 3830.0030
GLY 3840.0031
LEU 3850.0028
SER 3860.0032
PHE 3870.0034
LYS 3880.0041
GLY 3890.0043
CYS 3900.0035
CYS 3910.0036
SER 3920.0048
GLN 3930.0059
SER 3940.0064
ASP 3950.0053
PHE 3960.0057
GLY 3970.0072
THR 3980.0071
ILE 3990.0077
SER 4000.0078
LEU 4010.0066
LYS 4020.0062
TYR 4030.0056
LEU 4040.0044
ASP 4050.0042
LEU 4060.0033
SER 4070.0040
PHE 4080.0043
ASN 4090.0037
GLY 4100.0039
VAL 4110.0041
ILE 4120.0036
THR 4130.0040
MET 4140.0037
SER 4150.0041
SER 4160.0038
ASN 4170.0033
PHE 4180.0034
LEU 4190.0042
GLY 4200.0051
LEU 4210.0047
GLU 4220.0040
GLN 4230.0051
LEU 4240.0046
GLU 4250.0055
HIS 4260.0054
LEU 4270.0042
ASP 4280.0045
PHE 4290.0042
GLN 4300.0052
HIS 4310.0054
SER 4320.0045
ASN 4330.0047
LEU 4340.0044
LYS 4350.0047
GLN 4360.0048
MET 4370.0044
SER 4380.0049
GLU 4390.0047
PHE 4400.0041
SER 4410.0038
VAL 4420.0036
PHE 4430.0036
LEU 4440.0033
SER 4450.0031
LEU 4460.0037
ARG 4470.0036
ASN 4480.0045
LEU 4490.0046
ILE 4500.0057
TYR 4510.0059
LEU 4520.0051
ASP 4530.0054
ILE 4540.0054
SER 4550.0061
HIS 4560.0063
THR 4570.0057
HIS 4580.0061
THR 4590.0058
ARG 4600.0060
VAL 4610.0056
ALA 4620.0053
PHE 4630.0051
ASN 4640.0053
GLY 4650.0049
ILE 4660.0048
PHE 4670.0052
ASN 4680.0048
GLY 4690.0045
LEU 4700.0051
SER 4710.0055
SER 4720.0058
LEU 4730.0059
GLU 4740.0066
VAL 4750.0067
LEU 4760.0064
LYS 4770.0062
MET 4780.0062
ALA 4790.0064
GLY 4800.0065
ASN 4810.0063
SER 4820.0060
PHE 4830.0059
GLN 4840.0060
GLU 4850.0059
ASN 4860.0057
PHE 4870.0057
LEU 4880.0060
PRO 4890.0063
ASP 4900.0067
ILE 4910.0068
PHE 4920.0068
THR 4930.0070
GLU 4940.0069
LEU 4950.0069
ARG 4960.0074
ASN 4970.0073
LEU 4980.0072
THR 4990.0073
PHE 5000.0071
LEU 5010.0070
ASP 5020.0065
LEU 5030.0064
SER 5040.0062
GLN 5050.0062
CYS 5060.0063
GLN 5070.0058
LEU 5080.0058
GLU 5090.0054
GLN 5100.0056
LEU 5110.0059
SER 5120.0065
PRO 5130.0064
THR 5140.0071
ALA 5150.0070
PHE 5160.0070
ASN 5170.0074
SER 5180.0079
LEU 5190.0077
SER 5200.0080
SER 5210.0081
LEU 5220.0077
GLN 5230.0075
VAL 5240.0071
LEU 5250.0068
ASN 5260.0065
MET 5270.0059
SER 5280.0054
HIS 5290.0053
ASN 5300.0054
ASN 5310.0050
PHE 5320.0045
PHE 5330.0037
SER 5340.0035
LEU 5350.0033
ASP 5360.0042
THR 5370.0044
PHE 5380.0053
PRO 5390.0063
TYR 5400.0061
LYS 5410.0061
CYS 5420.0072
LEU 5430.0072
ASN 5440.0076
SER 5450.0078
LEU 5460.0071
GLN 5470.0069
VAL 5480.0065
LEU 5490.0057
ASP 5500.0054
TYR 5510.0044
SER 5520.0042
LEU 5530.0037
ASN 5540.0036
HIS 5550.0031
ILE 5560.0028
MET 5570.0034
THR 5580.0037
SER 5590.0034
LYS 5600.0048
LYS 5610.0046
GLN 5620.0039
GLU 5630.0037
LEU 5640.0026
GLN 5650.0027
HIS 5660.0041
PHE 5670.0044
PRO 5680.0054
SER 5690.0055
SER 5700.0065
LEU 5710.0058
ALA 5720.0063
PHE 5730.0060
LEU 5740.0045
ASN 5750.0047
LEU 5760.0033
THR 5770.0039
GLN 5780.0030
ASN 5790.0023
ASP 5800.0029
PHE 5810.0036
ALA 5820.0057
CYS 5830.0072
THR 5840.0091
CYS 5850.0104
GLU 5860.0098
HIS 5870.0070
GLN 5880.0075
SER 5890.0061
PHE 5900.0042
LEU 5910.0056
GLN 5920.0062
TRP 5930.0044
ILE 5940.0046
LYS 5950.0066
ASP 5960.0062
GLN 5970.0049
ARG 5980.0062
GLN 5990.0071
LEU 6000.0057
LEU 6010.0053
VAL 6020.0068
GLU 6030.0068
VAL 6040.0069
GLU 6050.0071
ARG 6060.0055
MET 6070.0047
GLU 6080.0049
CYS 6090.0054
ALA 6100.0048
THR 6110.0063
PRO 6120.0085
SER 6130.0084
ASP 6140.0099
LYS 6150.0088
GLN 6160.0065
GLY 6170.0064
MET 6180.0078
PRO 6190.0073
VAL 6200.0064
LEU 6210.0078
SER 6220.0100
LEU 6230.0096
ASN 6240.0116
ILE 6250.0110
THR 6260.0134
CYS 6270.0142
GLU 10.0169
ALA 20.0199
ALA 30.0313
ALA 40.0246
LYS 50.0138
MET 60.0221
GLN 70.0237
ARG 80.0175
LEU 90.0176
VAL 100.0195
LEU 110.0165
LEU 120.0176
LEU 130.0159
ALA 140.0133
ILE 150.0199
SER 160.0163
LEU 170.0128
LEU 180.0137
LEU 190.0170
TYR 200.0148
GLN 210.0117
ASP 220.0117
LEU 230.0119
PRO 240.0116
VAL 250.0117
ARG 260.0125
SER 270.0107
GLU 280.0116
PHE 290.0112
GLU 300.0091
LEU 310.0080
ASP 320.0094
ARG 330.0087
ILE 340.0075
CYS 350.0082
GLY 360.0070
TYR 370.0057
GLY 380.0057
THR 390.0065
ALA 400.0077
ARG 410.0074
CYS 420.0088
ARG 430.0087
LYS 440.0100
LYS 450.0097
CYS 460.0084
ARG 470.0070
SER 480.0086
GLN 490.0085
GLU 500.0085
TYR 510.0112
ARG 520.0120
ILE 530.0125
GLY 540.0133
ARG 550.0135
CYS 560.0120
PRO 570.0129
ASN 580.0133
THR 590.0144
TYR 600.0126
ALA 610.0116
CYS 620.0101
CYS 630.0089
LEU 640.0086
ARG 650.0081
LYS 660.0103
TRP 670.0111
ASP 680.0100
GLU 690.0104
SER 700.0102
LEU 710.0112
LEU 720.0114
ASN 730.0105
ARG 740.0116
THR 750.0130
LYS 760.0107
PRO 770.0109
GLU 780.0109
ALA 790.0104
ALA 800.0113
ALA 810.0087
LYS 820.0087
LYS 830.0099
GLU 840.0098
MET 850.0110
ASN 860.0103
LEU 870.0095
SER 880.0095
VAL 890.0091
GLY 900.0091
LEU 910.0099
GLY 920.0101
GLY 930.0129
GLY 940.0135
SER 950.0135
ASN 960.0114
LEU 970.0115
SER 980.0114
VAL 990.0114
GLY 1000.0117
LEU 1010.0094
GLY 1020.0090
GLU 1030.0092
ILE 1040.0091
GLY 1050.0094
GLY 1060.0085
GLY 1070.0073
SER 1080.0073
LYS 1090.0075
LEU 1100.0079
LEU 1110.0097
ASP 1120.0110
ILE 1130.0100
ASN 1140.0117
LEU 1150.0106
GLY 1160.0118
ARG 1170.0110
GLY 1180.0100
GLY 1190.0074
GLY 1200.0061
SER 1210.0067
MET 1220.0057
VAL 1230.0066
ASP 1240.0066
LEU 1250.0071
THR 1260.0086
PHE 1270.0096
GLY 1280.0116
GLY 1290.0112
VAL 1300.0131
GLY 1310.0135
GLY 1320.0138
GLY 1330.0117
SER 1340.0123
THR 1350.0103
PHE 1360.0092
THR 1370.0088
PHE 1380.0072
PHE 1390.0075
PRO 1400.0062
LEU 1410.0084
VAL 1420.0084
ILE 1430.0087
GLY 1440.0092
GLY 1450.0087
GLY 1460.0086
SER 1470.0094
ASP 1480.0083
ALA 1490.0096
MET 1500.0084
TYR 1510.0085
LEU 1520.0086
GLY 1530.0099
PHE 1540.0100
ALA 1550.0111
ALA 1560.0136
GLY 1570.0133
GLY 1580.0143
GLY 1590.0118
SER 1600.0102
ALA 1610.0070
GLY 1620.0070
GLY 1630.0062
GLU 1640.0070
ASN 1650.0051
HIS 1660.0048
VAL 1670.0033
ALA 1680.0032
PHE 1690.0023
GLY 1700.0038
PRO 1710.0069
GLY 1720.0094
PRO 1730.0103
GLY 1740.0081
VAL 1750.0040
ASP 1760.0032
LEU 1770.0023
THR 1780.0022
PHE 1790.0023
GLY 1800.0029
GLY 1810.0045
VAL 1820.0042
GLN 1830.0051
PHE 1840.0059
ALA 1850.0079
MET 1860.0080
VAL 1870.0126
ASN 1880.0155
ASN 1890.0193
GLY 1900.0221
PRO 1910.0194
GLY 1920.0134
PRO 1930.0121
GLY 1940.0029
GLU 1950.0095
SER 1960.0156
PHE 1970.0242
THR 1980.0155
ALA 1990.0083
GLN 2000.0207
PRO 2010.0262
ALA 2020.0233
ASP 2030.0265
MET 2040.0372
GLN 2050.0297
ALA 2060.0461
GLY 2070.0250
ILE 2080.0217
LYS 2090.0431
GLY 2100.0343
PRO 2110.0136
GLY 2120.0090
PRO 2130.0115
GLY 2140.0175
GLY 2150.0213
SER 2160.0134
ILE 2170.0111
GLN 2180.0116
VAL 2190.0102
ILE 2200.0123
ASN 2210.0150
GLY 2220.0128
SER 2230.0172
THR 2240.0165
ILE 2250.0158
GLY 2260.0195
THR 2270.0154
GLY 2280.0116
SER 2290.0067
LYS 2300.0103
LYS 2310.0071
THR 2320.0103
ILE 2330.0073
LEU 2340.0107
ILE 2350.0082
TYR 2360.0090
SER 2370.0088
ILE 2380.0074
ILE 2390.0086
GLY 2400.0071
VAL 2410.0059
LYS 2420.0053
LYS 2430.0047
GLY 2440.0054
THR 2450.0061
LEU 2460.0073
ALA 2470.0097
TRP 2480.0114
ALA 2490.0134
ARG 2500.0150
THR 2510.0157
GLY 2520.0176
PHE 2530.0169
SER 2540.0193
PRO 2550.0185
ALA 2560.0198
LYS 2570.0206
LYS 2580.0205
LEU 2590.0207
ASN 2600.0215
ALA 2610.0194
GLY 2620.0164
VAL 2630.0155
VAL 2640.0103
ARG 2650.0102
VAL 2660.0049
PHE 2670.0054
PHE 2680.0048
LEU 2690.0062
ASN 2700.0051
GLN 2710.0069
LYS 2720.0072
LYS 2730.0067
ALA 2740.0063
LYS 2750.0067
ASP 2760.0098
VAL 2770.0084
LEU 2780.0059
ARG 2790.0074
LYS 2800.0104
THR 2810.0111
SER 2820.0199
ARG 2830.0286
PRO 2840.0392
MET 2850.0596
VAL 2860.0579
ASP 2870.0145
LEU 2880.0563
THR 2890.0182
PHE 2900.0225
GLY 2910.0830
GLY 2920.1003

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.