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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 35  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0494
GLU 270.0230
PRO 280.0226
CYS 290.0193
VAL 300.0188
GLU 310.0184
VAL 320.0156
VAL 330.0160
PRO 340.0191
ASN 350.0186
ILE 360.0149
THR 370.0129
TYR 380.0141
GLN 390.0139
CYS 400.0152
MET 410.0148
GLU 420.0174
LEU 430.0192
ASN 440.0191
PHE 450.0172
TYR 460.0166
LYS 470.0151
ILE 480.0136
PRO 490.0165
ASP 500.0181
ASN 510.0208
LEU 520.0186
PRO 530.0191
PHE 540.0177
SER 550.0168
THR 560.0140
LYS 570.0106
ASN 580.0086
LEU 590.0093
ASP 600.0092
LEU 610.0105
SER 620.0101
PHE 630.0131
ASN 640.0140
PRO 650.0146
LEU 660.0120
ARG 670.0111
HIS 680.0091
LEU 690.0071
GLY 700.0070
SER 710.0064
TYR 720.0085
SER 730.0091
PHE 740.0095
PHE 750.0119
SER 760.0144
PHE 770.0125
PRO 780.0129
GLU 790.0124
LEU 800.0090
GLN 810.0064
VAL 820.0035
LEU 830.0038
ASP 840.0046
LEU 850.0059
SER 860.0074
ARG 870.0094
CYS 880.0093
GLU 890.0108
ILE 900.0082
GLN 910.0090
THR 920.0064
ILE 930.0039
GLU 940.0028
ASP 950.0017
GLY 960.0040
ALA 970.0042
TYR 980.0043
GLN 990.0064
SER 1000.0089
LEU 1010.0072
SER 1020.0086
HIS 1030.0081
LEU 1040.0044
SER 1050.0038
THR 1060.0014
LEU 1070.0013
ILE 1080.0031
LEU 1090.0043
THR 1100.0062
GLY 1110.0080
ASN 1120.0075
PRO 1130.0091
ILE 1140.0072
GLN 1150.0081
SER 1160.0059
LEU 1170.0045
ALA 1180.0031
LEU 1190.0041
GLY 1200.0028
ALA 1210.0012
PHE 1220.0023
SER 1230.0041
GLY 1240.0055
LEU 1250.0042
SER 1260.0068
SER 1270.0060
LEU 1280.0046
GLN 1290.0058
LYS 1300.0054
LEU 1310.0050
VAL 1320.0053
ALA 1330.0057
VAL 1340.0068
GLU 1350.0074
THR 1360.0064
ASN 1370.0075
LEU 1380.0074
ALA 1390.0086
SER 1400.0088
LEU 1410.0083
GLU 1420.0085
ASN 1430.0076
PHE 1440.0069
PRO 1450.0063
ILE 1460.0062
GLY 1470.0061
HIS 1480.0057
LEU 1490.0057
LYS 1500.0065
THR 1510.0064
LEU 1520.0070
LYS 1530.0077
GLU 1540.0077
LEU 1550.0074
ASN 1560.0076
VAL 1570.0079
ALA 1580.0082
HIS 1590.0082
ASN 1600.0080
LEU 1610.0081
ILE 1620.0085
GLN 1630.0085
SER 1640.0081
PHE 1650.0074
LYS 1660.0079
LEU 1670.0077
PRO 1680.0079
GLU 1690.0079
TYR 1700.0077
PHE 1710.0075
SER 1720.0075
ASN 1730.0071
LEU 1740.0071
THR 1750.0074
ASN 1760.0072
LEU 1770.0084
GLU 1780.0085
HIS 1790.0085
LEU 1800.0084
ASP 1810.0084
LEU 1820.0089
SER 1830.0088
SER 1840.0090
ASN 1850.0090
LYS 1860.0086
ILE 1870.0073
GLN 1880.0065
SER 1890.0052
ILE 1900.0048
TYR 1910.0045
CYS 1920.0047
THR 1930.0058
ASP 1940.0060
LEU 1950.0056
ARG 1960.0063
VAL 1970.0063
LEU 1980.0058
HIS 1990.0055
GLN 2000.0062
MET 2010.0063
PRO 2020.0067
LEU 2030.0073
LEU 2040.0074
ASN 2050.0073
LEU 2060.0071
SER 2070.0080
LEU 2080.0079
ASP 2090.0082
LEU 2100.0078
SER 2110.0083
LEU 2120.0094
ASN 2130.0084
PRO 2140.0082
MET 2150.0056
ASN 2160.0052
PHE 2170.0037
ILE 2180.0022
GLN 2190.0006
PRO 2200.0013
GLY 2210.0025
ALA 2220.0023
PHE 2230.0026
LYS 2240.0035
GLU 2250.0051
ILE 2260.0048
ARG 2270.0059
LEU 2280.0058
HIS 2290.0066
LYS 2300.0059
LEU 2310.0052
THR 2320.0068
LEU 2330.0062
ARG 2340.0098
ASN 2350.0119
ASN 2360.0090
PHE 2370.0116
ASP 2380.0150
SER 2390.0157
LEU 2400.0150
ASN 2410.0143
VAL 2420.0107
MET 2430.0098
LYS 2440.0100
THR 2450.0080
CYS 2460.0052
ILE 2470.0056
GLN 2480.0060
GLY 2490.0032
LEU 2500.0019
ALA 2510.0046
GLY 2520.0049
LEU 2530.0032
GLU 2540.0046
VAL 2550.0033
HIS 2560.0045
ARG 2570.0036
LEU 2580.0027
VAL 2590.0059
LEU 2600.0076
GLY 2610.0110
GLU 2620.0148
PHE 2630.0187
ARG 2640.0230
ASN 2650.0250
GLU 2660.0217
GLY 2670.0219
ASN 2680.0204
LEU 2690.0190
GLU 2700.0225
LYS 2710.0214
PHE 2720.0191
ASP 2730.0201
LYS 2740.0190
SER 2750.0177
ALA 2760.0150
LEU 2770.0116
GLU 2780.0130
GLY 2790.0101
LEU 2800.0078
CYS 2810.0104
ASN 2820.0082
LEU 2830.0054
THR 2840.0057
ILE 2850.0029
GLU 2860.0034
GLU 2870.0012
PHE 2880.0027
ARG 2890.0063
LEU 2900.0097
ALA 2910.0125
TYR 2920.0165
LEU 2930.0179
ASP 2940.0222
TYR 2950.0228
TYR 2960.0241
LEU 2970.0223
ASP 2980.0249
GLY 2990.0219
ILE 3000.0183
ILE 3010.0206
ASP 3020.0186
LEU 3030.0164
PHE 3040.0127
ASN 3050.0145
CYS 3060.0122
LEU 3070.0087
THR 3080.0106
ASN 3090.0095
VAL 3100.0055
SER 3110.0046
SER 3120.0007
PHE 3130.0034
SER 3140.0064
LEU 3150.0103
VAL 3160.0133
SER 3170.0175
VAL 3180.0175
THR 3190.0206
ILE 3200.0200
GLU 3210.0232
ARG 3220.0220
VAL 3230.0178
LYS 3240.0190
ASP 3250.0182
PHE 3260.0139
SER 3270.0156
TYR 3280.0162
ASN 3290.0144
PHE 3300.0115
GLY 3310.0103
TRP 3320.0058
GLN 3330.0048
HIS 3340.0011
LEU 3350.0031
GLU 3360.0060
LEU 3370.0096
VAL 3380.0128
ASN 3390.0169
CYS 3400.0167
LYS 3410.0197
PHE 3420.0185
GLY 3430.0215
GLN 3440.0185
PHE 3450.0140
PRO 3460.0129
THR 3470.0130
LEU 3480.0102
LYS 3490.0112
LEU 3500.0096
LYS 3510.0112
SER 3520.0090
LEU 3530.0052
LYS 3540.0051
ARG 3550.0029
LEU 3560.0021
THR 3570.0056
PHE 3580.0082
THR 3590.0115
SER 3600.0152
ASN 3610.0150
LYS 3620.0189
GLY 3630.0195
GLY 3640.0183
ASN 3650.0143
ALA 3660.0130
PHE 3670.0095
SER 3680.0099
GLU 3690.0086
VAL 3700.0074
ASP 3710.0082
LEU 3720.0065
PRO 3730.0088
SER 3740.0081
LEU 3750.0049
GLU 3760.0063
PHE 3770.0051
LEU 3780.0035
ASP 3790.0060
LEU 3800.0066
SER 3810.0098
ARG 3820.0123
ASN 3830.0116
GLY 3840.0125
LEU 3850.0098
SER 3860.0093
PHE 3870.0058
LYS 3880.0052
GLY 3890.0030
CYS 3900.0025
CYS 3910.0018
SER 3920.0023
GLN 3930.0046
SER 3940.0059
ASP 3950.0043
PHE 3960.0035
GLY 3970.0066
THR 3980.0056
ILE 3990.0082
SER 4000.0082
LEU 4010.0057
LYS 4020.0072
TYR 4030.0067
LEU 4040.0054
ASP 4050.0068
LEU 4060.0067
SER 4070.0084
PHE 4080.0099
ASN 4090.0086
GLY 4100.0087
VAL 4110.0074
ILE 4120.0058
THR 4130.0048
MET 4140.0038
SER 4150.0022
SER 4160.0022
ASN 4170.0038
PHE 4180.0037
LEU 4190.0042
GLY 4200.0054
LEU 4210.0049
GLU 4220.0067
GLN 4230.0072
LEU 4240.0066
GLU 4250.0085
HIS 4260.0082
LEU 4270.0071
ASP 4280.0075
PHE 4290.0074
GLN 4300.0085
HIS 4310.0087
SER 4320.0075
ASN 4330.0075
LEU 4340.0067
LYS 4350.0061
GLN 4360.0054
MET 4370.0066
SER 4380.0071
GLU 4390.0060
PHE 4400.0059
SER 4410.0064
VAL 4420.0056
PHE 4430.0063
LEU 4440.0064
SER 4450.0061
LEU 4460.0068
ARG 4470.0079
ASN 4480.0082
LEU 4490.0080
ILE 4500.0093
TYR 4510.0092
LEU 4520.0083
ASP 4530.0084
ILE 4540.0082
SER 4550.0087
HIS 4560.0086
THR 4570.0075
HIS 4580.0079
THR 4590.0076
ARG 4600.0083
VAL 4610.0084
ALA 4620.0087
PHE 4630.0084
ASN 4640.0086
GLY 4650.0082
ILE 4660.0079
PHE 4670.0082
ASN 4680.0080
GLY 4690.0078
LEU 4700.0081
SER 4710.0085
SER 4720.0088
LEU 4730.0088
GLU 4740.0094
VAL 4750.0094
LEU 4760.0090
LYS 4770.0088
MET 4780.0088
ALA 4790.0089
GLY 4800.0089
ASN 4810.0088
SER 4820.0087
PHE 4830.0086
GLN 4840.0087
GLU 4850.0082
ASN 4860.0079
PHE 4870.0076
LEU 4880.0076
PRO 4890.0079
ASP 4900.0080
ILE 4910.0084
PHE 4920.0080
THR 4930.0080
GLU 4940.0082
LEU 4950.0081
ARG 4960.0079
ASN 4970.0086
LEU 4980.0085
THR 4990.0086
PHE 5000.0085
LEU 5010.0083
ASP 5020.0081
LEU 5030.0080
SER 5040.0079
GLN 5050.0081
CYS 5060.0083
GLN 5070.0074
LEU 5080.0067
GLU 5090.0059
GLN 5100.0056
LEU 5110.0057
SER 5120.0061
PRO 5130.0054
THR 5140.0065
ALA 5150.0069
PHE 5160.0066
ASN 5170.0063
SER 5180.0075
LEU 5190.0073
SER 5200.0070
SER 5210.0074
LEU 5220.0074
GLN 5230.0070
VAL 5240.0069
LEU 5250.0067
ASN 5260.0069
MET 5270.0060
SER 5280.0064
HIS 5290.0074
ASN 5300.0068
ASN 5310.0063
PHE 5320.0048
PHE 5330.0045
SER 5340.0027
LEU 5350.0015
ASP 5360.0006
THR 5370.0013
PHE 5380.0030
PRO 5390.0042
TYR 5400.0040
LYS 5410.0049
CYS 5420.0056
LEU 5430.0055
ASN 5440.0060
SER 5450.0062
LEU 5460.0051
GLN 5470.0049
VAL 5480.0047
LEU 5490.0041
ASP 5500.0049
TYR 5510.0045
SER 5520.0059
LEU 5530.0078
ASN 5540.0068
HIS 5550.0069
ILE 5560.0050
MET 5570.0070
THR 5580.0058
SER 5590.0041
LYS 5600.0039
LYS 5610.0033
GLN 5620.0052
GLU 5630.0047
LEU 5640.0039
GLN 5650.0053
HIS 5660.0047
PHE 5670.0028
PRO 5680.0040
SER 5690.0042
SER 5700.0043
LEU 5710.0029
ALA 5720.0028
PHE 5730.0024
LEU 5740.0019
ASN 5750.0038
LEU 5760.0044
THR 5770.0066
GLN 5780.0091
ASN 5790.0081
ASP 5800.0101
PHE 5810.0095
ALA 5820.0121
CYS 5830.0138
THR 5840.0152
CYS 5850.0161
GLU 5860.0142
HIS 5870.0113
GLN 5880.0127
SER 5890.0109
PHE 5900.0080
LEU 5910.0099
GLN 5920.0109
TRP 5930.0082
ILE 5940.0071
LYS 5950.0091
ASP 5960.0088
GLN 5970.0054
ARG 5980.0053
GLN 5990.0032
LEU 6000.0013
LEU 6010.0029
VAL 6020.0033
GLU 6030.0057
VAL 6040.0067
GLU 6050.0092
ARG 6060.0095
MET 6070.0090
GLU 6080.0120
CYS 6090.0134
ALA 6100.0143
THR 6110.0152
PRO 6120.0170
SER 6130.0188
ASP 6140.0200
LYS 6150.0183
GLN 6160.0177
GLY 6170.0166
MET 6180.0159
PRO 6190.0129
VAL 6200.0115
LEU 6210.0110
SER 6220.0141
LEU 6230.0155
ASN 6240.0180
ILE 6250.0173
THR 6260.0206
CYS 6270.0251
GLU 10.0111
ALA 20.0375
ALA 30.0494
ALA 40.0306
LYS 50.0143
MET 60.0330
GLN 70.0353
ARG 80.0233
LEU 90.0190
VAL 100.0260
LEU 110.0282
LEU 120.0254
LEU 130.0124
ALA 140.0204
ILE 150.0356
SER 160.0233
LEU 170.0148
LEU 180.0217
LEU 190.0265
TYR 200.0191
GLN 210.0140
ASP 220.0155
LEU 230.0154
PRO 240.0125
VAL 250.0122
ARG 260.0148
SER 270.0117
GLU 280.0140
PHE 290.0139
GLU 300.0096
LEU 310.0086
ASP 320.0122
ARG 330.0116
ILE 340.0103
CYS 350.0135
GLY 360.0147
TYR 370.0129
GLY 380.0104
THR 390.0119
ALA 400.0128
ARG 410.0122
CYS 420.0150
ARG 430.0152
LYS 440.0180
LYS 450.0171
CYS 460.0138
ARG 470.0115
SER 480.0110
GLN 490.0105
GLU 500.0124
TYR 510.0150
ARG 520.0181
ILE 530.0198
GLY 540.0220
ARG 550.0227
CYS 560.0196
PRO 570.0207
ASN 580.0214
THR 590.0243
TYR 600.0214
ALA 610.0187
CYS 620.0168
CYS 630.0152
LEU 640.0142
ARG 650.0125
LYS 660.0103
TRP 670.0107
ASP 680.0094
GLU 690.0082
SER 700.0082
LEU 710.0097
LEU 720.0091
ASN 730.0077
ARG 740.0094
THR 750.0111
LYS 760.0103
PRO 770.0113
GLU 780.0113
ALA 790.0124
ALA 800.0131
ALA 810.0037
LYS 820.0034
LYS 830.0047
GLU 840.0052
MET 850.0073
ASN 860.0073
LEU 870.0070
SER 880.0069
VAL 890.0070
GLY 900.0069
LEU 910.0073
GLY 920.0073
GLY 930.0077
GLY 940.0073
SER 950.0077
ASN 960.0072
LEU 970.0073
SER 980.0074
VAL 990.0075
GLY 1000.0076
LEU 1010.0065
GLY 1020.0062
GLU 1030.0065
ILE 1040.0075
GLY 1050.0081
GLY 1060.0072
GLY 1070.0071
SER 1080.0072
LYS 1090.0074
LEU 1100.0073
LEU 1110.0081
ASP 1120.0086
ILE 1130.0081
ASN 1140.0090
LEU 1150.0086
GLY 1160.0098
ARG 1170.0103
GLY 1180.0098
GLY 1190.0094
GLY 1200.0086
SER 1210.0077
MET 1220.0066
VAL 1230.0071
ASP 1240.0066
LEU 1250.0071
THR 1260.0080
PHE 1270.0086
GLY 1280.0096
GLY 1290.0096
VAL 1300.0107
GLY 1310.0115
GLY 1320.0123
GLY 1330.0109
SER 1340.0114
THR 1350.0099
PHE 1360.0088
THR 1370.0081
PHE 1380.0063
PHE 1390.0060
PRO 1400.0042
LEU 1410.0036
VAL 1420.0024
ILE 1430.0036
GLY 1440.0039
GLY 1450.0059
GLY 1460.0079
SER 1470.0085
ASP 1480.0083
ALA 1490.0078
MET 1500.0062
TYR 1510.0066
LEU 1520.0070
GLY 1530.0077
PHE 1540.0087
ALA 1550.0098
ALA 1560.0124
GLY 1570.0123
GLY 1580.0134
GLY 1590.0117
SER 1600.0106
ALA 1610.0082
GLY 1620.0076
GLY 1630.0064
GLU 1640.0068
ASN 1650.0059
HIS 1660.0055
VAL 1670.0048
ALA 1680.0043
PHE 1690.0042
GLY 1700.0038
PRO 1710.0035
GLY 1720.0035
PRO 1730.0036
GLY 1740.0027
VAL 1750.0013
ASP 1760.0011
LEU 1770.0025
THR 1780.0023
PHE 1790.0037
GLY 1800.0033
GLY 1810.0021
VAL 1820.0019
GLN 1830.0022
PHE 1840.0038
ALA 1850.0047
MET 1860.0060
VAL 1870.0121
ASN 1880.0143
ASN 1890.0206
GLY 1900.0224
PRO 1910.0179
GLY 1920.0177
PRO 1930.0175
GLY 1940.0064
GLU 1950.0064
SER 1960.0231
PHE 1970.0253
THR 1980.0100
ALA 1990.0045
GLN 2000.0121
PRO 2010.0140
ALA 2020.0174
ASP 2030.0164
MET 2040.0213
GLN 2050.0131
ALA 2060.0205
GLY 2070.0094
ILE 2080.0099
LYS 2090.0174
GLY 2100.0175
PRO 2110.0033
GLY 2120.0040
PRO 2130.0080
GLY 2140.0104
GLY 2150.0094
SER 2160.0068
ILE 2170.0035
GLN 2180.0049
VAL 2190.0061
ILE 2200.0102
ASN 2210.0036
GLY 2220.0039
SER 2230.0064
THR 2240.0082
ILE 2250.0119
GLY 2260.0171
THR 2270.0186
GLY 2280.0194
SER 2290.0181
LYS 2300.0161
LYS 2310.0116
THR 2320.0116
ILE 2330.0082
LEU 2340.0101
ILE 2350.0092
TYR 2360.0109
SER 2370.0115
ILE 2380.0109
ILE 2390.0111
GLY 2400.0110
VAL 2410.0117
LYS 2420.0101
LYS 2430.0094
GLY 2440.0089
THR 2450.0094
LEU 2460.0104
ALA 2470.0106
TRP 2480.0098
ALA 2490.0108
ARG 2500.0106
THR 2510.0112
GLY 2520.0119
PHE 2530.0114
SER 2540.0137
PRO 2550.0138
ALA 2560.0155
LYS 2570.0146
LYS 2580.0146
LEU 2590.0144
ASN 2600.0142
ALA 2610.0146
GLY 2620.0124
VAL 2630.0098
VAL 2640.0073
ARG 2650.0064
VAL 2660.0035
PHE 2670.0044
PHE 2680.0049
LEU 2690.0057
ASN 2700.0070
GLN 2710.0063
LYS 2720.0043
LYS 2730.0042
ALA 2740.0046
LYS 2750.0043
ASP 2760.0083
VAL 2770.0083
LEU 2780.0077
ARG 2790.0091
LYS 2800.0106
THR 2810.0126
SER 2820.0125
ARG 2830.0140
PRO 2840.0155
MET 2850.0191
VAL 2860.0247
ASP 2870.0204
LEU 2880.0131
THR 2890.0139
PHE 2900.0111
GLY 2910.0166
GLY 2920.0222

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.