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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 36  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.1124
GLU 270.0067
PRO 280.0053
CYS 290.0059
VAL 300.0080
GLU 310.0097
VAL 320.0108
VAL 330.0118
PRO 340.0119
ASN 350.0109
ILE 360.0100
THR 370.0087
TYR 380.0071
GLN 390.0064
CYS 400.0041
MET 410.0048
GLU 420.0046
LEU 430.0030
ASN 440.0027
PHE 450.0014
TYR 460.0031
LYS 470.0031
ILE 480.0025
PRO 490.0037
ASP 500.0060
ASN 510.0070
LEU 520.0071
PRO 530.0088
PHE 540.0086
SER 550.0092
THR 560.0076
LYS 570.0070
ASN 580.0063
LEU 590.0046
ASP 600.0043
LEU 610.0026
SER 620.0039
PHE 630.0047
ASN 640.0033
PRO 650.0041
LEU 660.0032
ARG 670.0045
HIS 680.0046
LEU 690.0036
GLY 700.0048
SER 710.0052
TYR 720.0051
SER 730.0038
PHE 740.0035
PHE 750.0054
SER 760.0057
PHE 770.0054
PRO 780.0062
GLU 790.0065
LEU 800.0049
GLN 810.0049
VAL 820.0041
LEU 830.0027
ASP 840.0033
LEU 850.0028
SER 860.0045
ARG 870.0048
CYS 880.0038
GLU 890.0050
ILE 900.0043
GLN 910.0055
THR 920.0052
ILE 930.0040
GLU 940.0048
ASP 950.0049
GLY 960.0043
ALA 970.0034
TYR 980.0025
GLN 990.0038
SER 1000.0044
LEU 1010.0034
SER 1020.0035
HIS 1030.0039
LEU 1040.0026
SER 1050.0033
THR 1060.0033
LEU 1070.0024
ILE 1080.0033
LEU 1090.0035
THR 1100.0047
GLY 1110.0054
ASN 1120.0049
PRO 1130.0060
ILE 1140.0053
GLN 1150.0064
SER 1160.0058
LEU 1170.0046
ALA 1180.0047
LEU 1190.0041
GLY 1200.0038
ALA 1210.0031
PHE 1220.0021
SER 1230.0025
GLY 1240.0025
LEU 1250.0016
SER 1260.0022
SER 1270.0021
LEU 1280.0018
GLN 1290.0027
LYS 1300.0031
LEU 1310.0029
VAL 1320.0036
ALA 1330.0038
VAL 1340.0047
GLU 1350.0053
THR 1360.0048
ASN 1370.0054
LEU 1380.0046
ALA 1390.0045
SER 1400.0037
LEU 1410.0031
GLU 1420.0031
ASN 1430.0035
PHE 1440.0031
PRO 1450.0027
ILE 1460.0022
GLY 1470.0018
HIS 1480.0015
LEU 1490.0015
LYS 1500.0016
THR 1510.0019
LEU 1520.0022
LYS 1530.0027
GLU 1540.0031
LEU 1550.0031
ASN 1560.0037
VAL 1570.0039
ALA 1580.0044
HIS 1590.0050
ASN 1600.0047
LEU 1610.0048
ILE 1620.0036
GLN 1630.0033
SER 1640.0030
PHE 1650.0028
LYS 1660.0026
LEU 1670.0027
PRO 1680.0025
GLU 1690.0022
TYR 1700.0022
PHE 1710.0023
SER 1720.0021
ASN 1730.0019
LEU 1740.0021
THR 1750.0022
ASN 1760.0023
LEU 1770.0024
GLU 1780.0026
HIS 1790.0030
LEU 1800.0030
ASP 1810.0035
LEU 1820.0034
SER 1830.0036
SER 1840.0038
ASN 1850.0037
LYS 1860.0035
ILE 1870.0027
GLN 1880.0024
SER 1890.0023
ILE 1900.0024
TYR 1910.0025
CYS 1920.0025
THR 1930.0026
ASP 1940.0025
LEU 1950.0025
ARG 1960.0026
VAL 1970.0025
LEU 1980.0025
HIS 1990.0027
GLN 2000.0027
MET 2010.0026
PRO 2020.0025
LEU 2030.0025
LEU 2040.0025
ASN 2050.0024
LEU 2060.0024
SER 2070.0026
LEU 2080.0026
ASP 2090.0026
LEU 2100.0026
SER 2110.0027
LEU 2120.0026
ASN 2130.0025
PRO 2140.0023
MET 2150.0023
ASN 2160.0023
PHE 2170.0023
ILE 2180.0023
GLN 2190.0025
PRO 2200.0025
GLY 2210.0025
ALA 2220.0024
PHE 2230.0023
LYS 2240.0025
GLU 2250.0025
ILE 2260.0024
ARG 2270.0021
LEU 2280.0021
HIS 2290.0021
LYS 2300.0020
LEU 2310.0019
THR 2320.0020
LEU 2330.0020
ARG 2340.0020
ASN 2350.0022
ASN 2360.0022
PHE 2370.0024
ASP 2380.0027
SER 2390.0030
LEU 2400.0031
ASN 2410.0032
VAL 2420.0027
MET 2430.0025
LYS 2440.0026
THR 2450.0027
CYS 2460.0024
ILE 2470.0022
GLN 2480.0024
GLY 2490.0024
LEU 2500.0021
ALA 2510.0023
GLY 2520.0022
LEU 2530.0020
GLU 2540.0019
VAL 2550.0017
HIS 2560.0018
ARG 2570.0017
LEU 2580.0017
VAL 2590.0019
LEU 2600.0020
GLY 2610.0023
GLU 2620.0024
PHE 2630.0027
ARG 2640.0035
ASN 2650.0034
GLU 2660.0029
GLY 2670.0032
ASN 2680.0032
LEU 2690.0032
GLU 2700.0037
LYS 2710.0036
PHE 2720.0032
ASP 2730.0033
LYS 2740.0030
SER 2750.0029
ALA 2760.0028
LEU 2770.0024
GLU 2780.0025
GLY 2790.0024
LEU 2800.0020
CYS 2810.0021
ASN 2820.0021
LEU 2830.0019
THR 2840.0017
ILE 2850.0017
GLU 2860.0017
GLU 2870.0017
PHE 2880.0018
ARG 2890.0021
LEU 2900.0023
ALA 2910.0025
TYR 2920.0030
LEU 2930.0031
ASP 2940.0036
TYR 2950.0036
TYR 2960.0038
LEU 2970.0034
ASP 2980.0035
GLY 2990.0031
ILE 3000.0028
ILE 3010.0027
ASP 3020.0026
LEU 3030.0026
PHE 3040.0024
ASN 3050.0022
CYS 3060.0021
LEU 3070.0020
THR 3080.0020
ASN 3090.0020
VAL 3100.0020
SER 3110.0020
SER 3120.0021
PHE 3130.0022
SER 3140.0024
LEU 3150.0027
VAL 3160.0029
SER 3170.0033
VAL 3180.0032
THR 3190.0034
ILE 3200.0032
GLU 3210.0034
ARG 3220.0030
VAL 3230.0028
LYS 3240.0025
ASP 3250.0024
PHE 3260.0023
SER 3270.0023
TYR 3280.0023
ASN 3290.0023
PHE 3300.0023
GLY 3310.0023
TRP 3320.0023
GLN 3330.0023
HIS 3340.0023
LEU 3350.0024
GLU 3360.0024
LEU 3370.0028
VAL 3380.0031
ASN 3390.0035
CYS 3400.0033
LYS 3410.0035
PHE 3420.0032
GLY 3430.0031
GLN 3440.0028
PHE 3450.0027
PRO 3460.0024
THR 3470.0024
LEU 3480.0025
LYS 3490.0025
LEU 3500.0025
LYS 3510.0025
SER 3520.0027
LEU 3530.0026
LYS 3540.0026
ARG 3550.0026
LEU 3560.0026
THR 3570.0029
PHE 3580.0029
THR 3590.0032
SER 3600.0035
ASN 3610.0032
LYS 3620.0036
GLY 3630.0032
GLY 3640.0027
ASN 3650.0027
ALA 3660.0024
PHE 3670.0023
SER 3680.0023
GLU 3690.0023
VAL 3700.0024
ASP 3710.0024
LEU 3720.0027
PRO 3730.0027
SER 3740.0027
LEU 3750.0027
GLU 3760.0028
PHE 3770.0033
LEU 3780.0031
ASP 3790.0033
LEU 3800.0031
SER 3810.0033
ARG 3820.0035
ASN 3830.0031
GLY 3840.0031
LEU 3850.0026
SER 3860.0023
PHE 3870.0019
LYS 3880.0016
GLY 3890.0018
CYS 3900.0021
CYS 3910.0025
SER 3920.0022
GLN 3930.0021
SER 3940.0020
ASP 3950.0021
PHE 3960.0024
GLY 3970.0024
THR 3980.0025
ILE 3990.0025
SER 4000.0028
LEU 4010.0031
LYS 4020.0040
TYR 4030.0040
LEU 4040.0035
ASP 4050.0036
LEU 4060.0031
SER 4070.0036
PHE 4080.0035
ASN 4090.0030
GLY 4100.0024
VAL 4110.0019
ILE 4120.0020
THR 4130.0017
MET 4140.0022
SER 4150.0022
SER 4160.0025
ASN 4170.0031
PHE 4180.0030
LEU 4190.0029
GLY 4200.0029
LEU 4210.0033
GLU 4220.0042
GLN 4230.0046
LEU 4240.0045
GLU 4250.0053
HIS 4260.0050
LEU 4270.0046
ASP 4280.0043
PHE 4290.0035
GLN 4300.0036
HIS 4310.0032
SER 4320.0028
ASN 4330.0021
LEU 4340.0021
LYS 4350.0016
GLN 4360.0021
MET 4370.0027
SER 4380.0032
GLU 4390.0033
PHE 4400.0038
SER 4410.0042
VAL 4420.0036
PHE 4430.0043
LEU 4440.0047
SER 4450.0048
LEU 4460.0050
ARG 4470.0062
ASN 4480.0064
LEU 4490.0058
ILE 4500.0066
TYR 4510.0060
LEU 4520.0052
ASP 4530.0046
ILE 4540.0036
SER 4550.0034
HIS 4560.0026
THR 4570.0027
HIS 4580.0014
THR 4590.0019
ARG 4600.0019
VAL 4610.0033
ALA 4620.0035
PHE 4630.0043
ASN 4640.0051
GLY 4650.0053
ILE 4660.0045
PHE 4670.0053
ASN 4680.0060
GLY 4690.0064
LEU 4700.0064
SER 4710.0076
SER 4720.0079
LEU 4730.0070
GLU 4740.0074
VAL 4750.0066
LEU 4760.0056
LYS 4770.0047
MET 4780.0037
ALA 4790.0033
GLY 4800.0023
ASN 4810.0020
SER 4820.0017
PHE 4830.0025
GLN 4840.0030
GLU 4850.0031
ASN 4860.0025
PHE 4870.0034
LEU 4880.0039
PRO 4890.0050
ASP 4900.0060
ILE 4910.0059
PHE 4920.0063
THR 4930.0074
GLU 4940.0078
LEU 4950.0074
ARG 4960.0084
ASN 4970.0085
LEU 4980.0074
THR 4990.0075
PHE 5000.0066
LEU 5010.0056
ASP 5020.0045
LEU 5030.0035
SER 5040.0029
GLN 5050.0019
CYS 5060.0019
GLN 5070.0012
LEU 5080.0021
GLU 5090.0021
GLN 5100.0031
LEU 5110.0039
SER 5120.0050
PRO 5130.0053
THR 5140.0063
ALA 5150.0058
PHE 5160.0060
ASN 5170.0070
SER 5180.0079
LEU 5190.0074
SER 5200.0081
SER 5210.0083
LEU 5220.0071
GLN 5230.0071
VAL 5240.0060
LEU 5250.0049
ASN 5260.0040
MET 5270.0030
SER 5280.0026
HIS 5290.0019
ASN 5300.0015
ASN 5310.0009
PHE 5320.0015
PHE 5330.0011
SER 5340.0011
LEU 5350.0015
ASP 5360.0024
THR 5370.0032
PHE 5380.0041
PRO 5390.0048
TYR 5400.0049
LYS 5410.0054
CYS 5420.0065
LEU 5430.0064
ASN 5440.0072
SER 5450.0074
LEU 5460.0063
GLN 5470.0061
VAL 5480.0052
LEU 5490.0042
ASP 5500.0035
TYR 5510.0023
SER 5520.0022
LEU 5530.0016
ASN 5540.0012
HIS 5550.0008
ILE 5560.0007
MET 5570.0016
THR 5580.0014
SER 5590.0009
LYS 5600.0019
LYS 5610.0020
GLN 5620.0012
GLU 5630.0021
LEU 5640.0018
GLN 5650.0027
HIS 5660.0037
PHE 5670.0039
PRO 5680.0049
SER 5690.0052
SER 5700.0059
LEU 5710.0052
ALA 5720.0056
PHE 5730.0049
LEU 5740.0036
ASN 5750.0032
LEU 5760.0021
THR 5770.0021
GLN 5780.0013
ASN 5790.0010
ASP 5800.0018
PHE 5810.0023
ALA 5820.0038
CYS 5830.0050
THR 5840.0062
CYS 5850.0070
GLU 5860.0061
HIS 5870.0043
GLN 5880.0049
SER 5890.0037
PHE 5900.0026
LEU 5910.0040
GLN 5920.0048
TRP 5930.0038
ILE 5940.0039
LYS 5950.0055
ASP 5960.0057
GLN 5970.0049
ARG 5980.0055
GLN 5990.0063
LEU 6000.0052
LEU 6010.0044
VAL 6020.0059
GLU 6030.0044
VAL 6040.0051
GLU 6050.0035
ARG 6060.0019
MET 6070.0031
GLU 6080.0034
CYS 6090.0040
ALA 6100.0039
THR 6110.0049
PRO 6120.0066
SER 6130.0079
ASP 6140.0087
LYS 6150.0072
GLN 6160.0064
GLY 6170.0051
MET 6180.0059
PRO 6190.0052
VAL 6200.0048
LEU 6210.0059
SER 6220.0073
LEU 6230.0071
ASN 6240.0086
ILE 6250.0080
THR 6260.0097
CYS 6270.0103
GLU 10.0061
ALA 20.0048
ALA 30.0078
ALA 40.0064
LYS 50.0027
MET 60.0040
GLN 70.0043
ARG 80.0041
LEU 90.0043
VAL 100.0032
LEU 110.0031
LEU 120.0054
LEU 130.0051
ALA 140.0029
ILE 150.0056
SER 160.0056
LEU 170.0048
LEU 180.0044
LEU 190.0051
TYR 200.0049
GLN 210.0041
ASP 220.0036
LEU 230.0035
PRO 240.0034
VAL 250.0037
ARG 260.0040
SER 270.0033
GLU 280.0034
PHE 290.0031
GLU 300.0025
LEU 310.0026
ASP 320.0029
ARG 330.0023
ILE 340.0019
CYS 350.0021
GLY 360.0013
TYR 370.0018
GLY 380.0012
THR 390.0018
ALA 400.0021
ARG 410.0022
CYS 420.0029
ARG 430.0033
LYS 440.0040
LYS 450.0042
CYS 460.0036
ARG 470.0034
SER 480.0041
GLN 490.0039
GLU 500.0038
TYR 510.0046
ARG 520.0046
ILE 530.0042
GLY 540.0044
ARG 550.0046
CYS 560.0039
PRO 570.0043
ASN 580.0046
THR 590.0050
TYR 600.0045
ALA 610.0043
CYS 620.0035
CYS 630.0034
LEU 640.0032
ARG 650.0034
LYS 660.0049
TRP 670.0054
ASP 680.0048
GLU 690.0048
SER 700.0048
LEU 710.0054
LEU 720.0057
ASN 730.0053
ARG 740.0058
THR 750.0066
LYS 760.0062
PRO 770.0062
GLU 780.0062
ALA 790.0058
ALA 800.0062
ALA 810.0034
LYS 820.0060
LYS 830.0092
GLU 840.0049
MET 850.0112
ASN 860.0064
LEU 870.0072
SER 880.0070
VAL 890.0074
GLY 900.0076
LEU 910.0071
GLY 920.0075
GLY 930.0067
GLY 940.0059
SER 950.0055
ASN 960.0049
LEU 970.0044
SER 980.0041
VAL 990.0053
GLY 1000.0052
LEU 1010.0117
GLY 1020.0270
GLU 1030.0420
ILE 1040.0585
GLY 1050.0758
GLY 1060.0924
GLY 1070.0686
SER 1080.0498
LYS 1090.0280
LEU 1100.0101
LEU 1110.0081
ASP 1120.0092
ILE 1130.0086
ASN 1140.0103
LEU 1150.0099
GLY 1160.0124
ARG 1170.0136
GLY 1180.0132
GLY 1190.0126
GLY 1200.0114
SER 1210.0095
MET 1220.0085
VAL 1230.0086
ASP 1240.0082
LEU 1250.0082
THR 1260.0102
PHE 1270.0113
GLY 1280.0135
GLY 1290.0134
VAL 1300.0153
GLY 1310.0140
GLY 1320.0153
GLY 1330.0128
SER 1340.0144
THR 1350.0119
PHE 1360.0102
THR 1370.0101
PHE 1380.0077
PHE 1390.0084
PRO 1400.0059
LEU 1410.0073
VAL 1420.0062
ILE 1430.0049
GLY 1440.0044
GLY 1450.0035
GLY 1460.0019
SER 1470.0047
ASP 1480.0058
ALA 1490.0066
MET 1500.0055
TYR 1510.0084
LEU 1520.0086
GLY 1530.0114
PHE 1540.0118
ALA 1550.0143
ALA 1560.0173
GLY 1570.0170
GLY 1580.0182
GLY 1590.0151
SER 1600.0125
ALA 1610.0098
GLY 1620.0077
GLY 1630.0060
GLU 1640.0077
ASN 1650.0063
HIS 1660.0063
VAL 1670.0055
ALA 1680.0058
PHE 1690.0057
GLY 1700.0063
PRO 1710.0088
GLY 1720.0090
PRO 1730.0084
GLY 1740.0070
VAL 1750.0048
ASP 1760.0051
LEU 1770.0043
THR 1780.0044
PHE 1790.0048
GLY 1800.0047
GLY 1810.0065
VAL 1820.0074
GLN 1830.0072
PHE 1840.0071
ALA 1850.0077
MET 1860.0084
VAL 1870.0111
ASN 1880.0109
ASN 1890.0121
GLY 1900.0130
PRO 1910.0140
GLY 1920.0121
PRO 1930.0134
GLY 1940.0127
GLU 1950.0071
SER 1960.0177
PHE 1970.0150
THR 1980.0141
ALA 1990.0124
GLN 2000.0112
PRO 2010.0069
ALA 2020.0057
ASP 2030.0059
MET 2040.0075
GLN 2050.0083
ALA 2060.0129
GLY 2070.0136
ILE 2080.0054
LYS 2090.0107
GLY 2100.0051
PRO 2110.0116
GLY 2120.0185
PRO 2130.0117
GLY 2140.0077
GLY 2150.0121
SER 2160.0226
ILE 2170.0189
GLN 2180.0122
VAL 2190.0134
ILE 2200.0121
ASN 2210.0123
GLY 2220.0133
SER 2230.0165
THR 2240.0155
ILE 2250.0215
GLY 2260.0214
THR 2270.0200
GLY 2280.0212
SER 2290.0217
LYS 2300.0234
LYS 2310.0238
THR 2320.0253
ILE 2330.0211
LEU 2340.0215
ILE 2350.0193
TYR 2360.0151
SER 2370.0147
ILE 2380.0109
ILE 2390.0106
GLY 2400.0083
VAL 2410.0041
LYS 2420.0029
LYS 2430.0027
GLY 2440.0022
THR 2450.0024
LEU 2460.0071
ALA 2470.0104
TRP 2480.0148
ALA 2490.0181
ARG 2500.0226
THR 2510.0242
GLY 2520.0267
PHE 2530.0270
SER 2540.0300
PRO 2550.0302
ALA 2560.0335
LYS 2570.0345
LYS 2580.0242
LEU 2590.0314
ASN 2600.0330
ALA 2610.0536
GLY 2620.0330
VAL 2630.0337
VAL 2640.0202
ARG 2650.0158
VAL 2660.0163
PHE 2670.0123
PHE 2680.0112
LEU 2690.0081
ASN 2700.0065
GLN 2710.0056
LYS 2720.0056
LYS 2730.0053
ALA 2740.0045
LYS 2750.0034
ASP 2760.0017
VAL 2770.0057
LEU 2780.0083
ARG 2790.0072
LYS 2800.0114
THR 2810.0310
SER 2820.0583
ARG 2830.0608
PRO 2840.0904
MET 2850.1073
VAL 2860.1124
ASP 2870.0809
LEU 2880.0710
THR 2890.0402
PHE 2900.0432
GLY 2910.0238
GLY 2920.0736

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.