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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 37  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.1268
GLU 270.0013
PRO 280.0009
CYS 290.0011
VAL 300.0016
GLU 310.0021
VAL 320.0025
VAL 330.0028
PRO 340.0028
ASN 350.0026
ILE 360.0024
THR 370.0020
TYR 380.0015
GLN 390.0014
CYS 400.0008
MET 410.0012
GLU 420.0014
LEU 430.0011
ASN 440.0014
PHE 450.0012
TYR 460.0017
LYS 470.0015
ILE 480.0011
PRO 490.0011
ASP 500.0016
ASN 510.0017
LEU 520.0016
PRO 530.0021
PHE 540.0022
SER 550.0023
THR 560.0018
LYS 570.0017
ASN 580.0015
LEU 590.0010
ASP 600.0010
LEU 610.0008
SER 620.0013
PHE 630.0016
ASN 640.0014
PRO 650.0018
LEU 660.0015
ARG 670.0019
HIS 680.0019
LEU 690.0016
GLY 700.0019
SER 710.0019
TYR 720.0018
SER 730.0015
PHE 740.0012
PHE 750.0017
SER 760.0016
PHE 770.0014
PRO 780.0016
GLU 790.0016
LEU 800.0012
GLN 810.0012
VAL 820.0010
LEU 830.0008
ASP 840.0009
LEU 850.0010
SER 860.0013
ARG 870.0017
CYS 880.0014
GLU 890.0019
ILE 900.0016
GLN 910.0021
THR 920.0020
ILE 930.0017
GLU 940.0019
ASP 950.0018
GLY 960.0016
ALA 970.0014
TYR 980.0011
GLN 990.0013
SER 1000.0014
LEU 1010.0010
SER 1020.0010
HIS 1030.0010
LEU 1040.0007
SER 1050.0008
THR 1060.0009
LEU 1070.0008
ILE 1080.0010
LEU 1090.0012
THR 1100.0014
GLY 1110.0017
ASN 1120.0017
PRO 1130.0021
ILE 1140.0019
GLN 1150.0023
SER 1160.0022
LEU 1170.0018
ALA 1180.0018
LEU 1190.0017
GLY 1200.0015
ALA 1210.0014
PHE 1220.0011
SER 1230.0012
GLY 1240.0010
LEU 1250.0008
SER 1260.0008
SER 1270.0007
LEU 1280.0007
GLN 1290.0008
LYS 1300.0009
LEU 1310.0010
VAL 1320.0010
ALA 1330.0012
VAL 1340.0015
GLU 1350.0017
THR 1360.0016
ASN 1370.0019
LEU 1380.0016
ALA 1390.0016
SER 1400.0014
LEU 1410.0012
GLU 1420.0013
ASN 1430.0014
PHE 1440.0013
PRO 1450.0013
ILE 1460.0011
GLY 1470.0010
HIS 1480.0010
LEU 1490.0009
LYS 1500.0009
THR 1510.0008
LEU 1520.0009
LYS 1530.0010
GLU 1540.0010
LEU 1550.0010
ASN 1560.0011
VAL 1570.0013
ALA 1580.0014
HIS 1590.0016
ASN 1600.0016
LEU 1610.0016
ILE 1620.0012
GLN 1630.0010
SER 1640.0009
PHE 1650.0009
LYS 1660.0009
LEU 1670.0010
PRO 1680.0010
GLU 1690.0010
TYR 1700.0011
PHE 1710.0010
SER 1720.0010
ASN 1730.0010
LEU 1740.0010
THR 1750.0010
ASN 1760.0010
LEU 1770.0010
GLU 1780.0010
HIS 1790.0010
LEU 1800.0010
ASP 1810.0011
LEU 1820.0011
SER 1830.0012
SER 1840.0013
ASN 1850.0012
LYS 1860.0011
ILE 1870.0009
GLN 1880.0008
SER 1890.0007
ILE 1900.0007
TYR 1910.0007
CYS 1920.0008
THR 1930.0008
ASP 1940.0008
LEU 1950.0008
ARG 1960.0009
VAL 1970.0010
LEU 1980.0009
HIS 1990.0010
GLN 2000.0011
MET 2010.0011
PRO 2020.0011
LEU 2030.0012
LEU 2040.0011
ASN 2050.0011
LEU 2060.0010
SER 2070.0010
LEU 2080.0009
ASP 2090.0010
LEU 2100.0009
SER 2110.0011
LEU 2120.0013
ASN 2130.0011
PRO 2140.0011
MET 2150.0009
ASN 2160.0010
PHE 2170.0010
ILE 2180.0008
GLN 2190.0009
PRO 2200.0009
GLY 2210.0009
ALA 2220.0008
PHE 2230.0007
LYS 2240.0008
GLU 2250.0009
ILE 2260.0008
ARG 2270.0008
LEU 2280.0008
HIS 2290.0009
LYS 2300.0009
LEU 2310.0007
THR 2320.0011
LEU 2330.0011
ARG 2340.0015
ASN 2350.0018
ASN 2360.0014
PHE 2370.0018
ASP 2380.0021
SER 2390.0023
LEU 2400.0022
ASN 2410.0021
VAL 2420.0018
MET 2430.0016
LYS 2440.0016
THR 2450.0015
CYS 2460.0012
ILE 2470.0011
GLN 2480.0012
GLY 2490.0010
LEU 2500.0007
ALA 2510.0008
GLY 2520.0008
LEU 2530.0005
GLU 2540.0006
VAL 2550.0006
HIS 2560.0008
ARG 2570.0009
LEU 2580.0009
VAL 2590.0012
LEU 2600.0014
GLY 2610.0018
GLU 2620.0022
PHE 2630.0026
ARG 2640.0032
ASN 2650.0033
GLU 2660.0029
GLY 2670.0029
ASN 2680.0028
LEU 2690.0026
GLU 2700.0030
LYS 2710.0028
PHE 2720.0024
ASP 2730.0023
LYS 2740.0020
SER 2750.0019
ALA 2760.0019
LEU 2770.0015
GLU 2780.0014
GLY 2790.0012
LEU 2800.0009
CYS 2810.0009
ASN 2820.0009
LEU 2830.0005
THR 2840.0004
ILE 2850.0005
GLU 2860.0007
GLU 2870.0009
PHE 2880.0011
ARG 2890.0015
LEU 2900.0017
ALA 2910.0021
TYR 2920.0025
LEU 2930.0025
ASP 2940.0030
TYR 2950.0029
TYR 2960.0029
LEU 2970.0025
ASP 2980.0025
GLY 2990.0021
ILE 3000.0018
ILE 3010.0017
ASP 3020.0016
LEU 3030.0017
PHE 3040.0013
ASN 3050.0011
CYS 3060.0010
LEU 3070.0008
THR 3080.0006
ASN 3090.0004
VAL 3100.0007
SER 3110.0009
SER 3120.0012
PHE 3130.0013
SER 3140.0017
LEU 3150.0019
VAL 3160.0023
SER 3170.0026
VAL 3180.0025
THR 3190.0026
ILE 3200.0023
GLU 3210.0024
ARG 3220.0020
VAL 3230.0016
LYS 3240.0014
ASP 3250.0013
PHE 3260.0010
SER 3270.0008
TYR 3280.0008
ASN 3290.0005
PHE 3300.0006
GLY 3310.0005
TRP 3320.0009
GLN 3330.0011
HIS 3340.0014
LEU 3350.0014
GLU 3360.0017
LEU 3370.0019
VAL 3380.0024
ASN 3390.0027
CYS 3400.0025
LYS 3410.0026
PHE 3420.0022
GLY 3430.0022
GLN 3440.0018
PHE 3450.0015
PRO 3460.0013
THR 3470.0009
LEU 3480.0009
LYS 3490.0006
LEU 3500.0007
LYS 3510.0006
SER 3520.0009
LEU 3530.0011
LYS 3540.0014
ARG 3550.0016
LEU 3560.0016
THR 3570.0019
PHE 3580.0019
THR 3590.0023
SER 3600.0026
ASN 3610.0023
LYS 3620.0026
GLY 3630.0023
GLY 3640.0019
ASN 3650.0016
ALA 3660.0012
PHE 3670.0010
SER 3680.0007
GLU 3690.0006
VAL 3700.0007
ASP 3710.0006
LEU 3720.0009
PRO 3730.0009
SER 3740.0012
LEU 3750.0014
GLU 3760.0018
PHE 3770.0020
LEU 3780.0018
ASP 3790.0020
LEU 3800.0018
SER 3810.0021
ARG 3820.0022
ASN 3830.0019
GLY 3840.0018
LEU 3850.0015
SER 3860.0012
PHE 3870.0007
LYS 3880.0004
GLY 3890.0006
CYS 3900.0009
CYS 3910.0012
SER 3920.0011
GLN 3930.0012
SER 3940.0008
ASP 3950.0007
PHE 3960.0010
GLY 3970.0008
THR 3980.0013
ILE 3990.0016
SER 4000.0019
LEU 4010.0019
LYS 4020.0024
TYR 4030.0024
LEU 4040.0020
ASP 4050.0020
LEU 4060.0017
SER 4070.0019
PHE 4080.0019
ASN 4090.0016
GLY 4100.0013
VAL 4110.0009
ILE 4120.0007
THR 4130.0005
MET 4140.0009
SER 4150.0010
SER 4160.0014
ASN 4170.0017
PHE 4180.0017
LEU 4190.0019
GLY 4200.0020
LEU 4210.0020
GLU 4220.0026
GLN 4230.0028
LEU 4240.0026
GLU 4250.0029
HIS 4260.0027
LEU 4270.0022
ASP 4280.0021
PHE 4290.0016
GLN 4300.0018
HIS 4310.0016
SER 4320.0013
ASN 4330.0009
LEU 4340.0007
LYS 4350.0004
GLN 4360.0009
MET 4370.0011
SER 4380.0014
GLU 4390.0016
PHE 4400.0019
SER 4410.0021
VAL 4420.0018
PHE 4430.0021
LEU 4440.0025
SER 4450.0026
LEU 4460.0027
ARG 4470.0032
ASN 4480.0033
LEU 4490.0030
ILE 4500.0032
TYR 4510.0029
LEU 4520.0024
ASP 4530.0021
ILE 4540.0016
SER 4550.0016
HIS 4560.0012
THR 4570.0013
HIS 4580.0007
THR 4590.0006
ARG 4600.0006
VAL 4610.0014
ALA 4620.0015
PHE 4630.0019
ASN 4640.0022
GLY 4650.0024
ILE 4660.0020
PHE 4670.0024
ASN 4680.0028
GLY 4690.0030
LEU 4700.0030
SER 4710.0035
SER 4720.0036
LEU 4730.0032
GLU 4740.0033
VAL 4750.0029
LEU 4760.0024
LYS 4770.0019
MET 4780.0015
ALA 4790.0013
GLY 4800.0009
ASN 4810.0007
SER 4820.0006
PHE 4830.0010
GLN 4840.0012
GLU 4850.0012
ASN 4860.0009
PHE 4870.0013
LEU 4880.0015
PRO 4890.0019
ASP 4900.0023
ILE 4910.0023
PHE 4920.0025
THR 4930.0030
GLU 4940.0033
LEU 4950.0031
ARG 4960.0034
ASN 4970.0035
LEU 4980.0030
THR 4990.0030
PHE 5000.0027
LEU 5010.0022
ASP 5020.0017
LEU 5030.0013
SER 5040.0011
GLN 5050.0008
CYS 5060.0008
GLN 5070.0004
LEU 5080.0007
GLU 5090.0007
GLN 5100.0010
LEU 5110.0013
SER 5120.0017
PRO 5130.0017
THR 5140.0021
ALA 5150.0020
PHE 5160.0022
ASN 5170.0025
SER 5180.0029
LEU 5190.0028
SER 5200.0030
SER 5210.0031
LEU 5220.0026
GLN 5230.0027
VAL 5240.0023
LEU 5250.0018
ASN 5260.0015
MET 5270.0010
SER 5280.0009
HIS 5290.0007
ASN 5300.0006
ASN 5310.0004
PHE 5320.0005
PHE 5330.0003
SER 5340.0003
LEU 5350.0006
ASP 5360.0007
THR 5370.0010
PHE 5380.0011
PRO 5390.0014
TYR 5400.0016
LYS 5410.0017
CYS 5420.0021
LEU 5430.0021
ASN 5440.0024
SER 5450.0026
LEU 5460.0023
GLN 5470.0023
VAL 5480.0020
LEU 5490.0016
ASP 5500.0013
TYR 5510.0009
SER 5520.0009
LEU 5530.0006
ASN 5540.0005
HIS 5550.0005
ILE 5560.0005
MET 5570.0008
THR 5580.0008
SER 5590.0007
LYS 5600.0007
LYS 5610.0005
GLN 5620.0006
GLU 5630.0007
LEU 5640.0010
GLN 5650.0013
HIS 5660.0013
PHE 5670.0014
PRO 5680.0017
SER 5690.0019
SER 5700.0022
LEU 5710.0020
ALA 5720.0025
PHE 5730.0021
LEU 5740.0016
ASN 5750.0014
LEU 5760.0010
THR 5770.0008
GLN 5780.0005
ASN 5790.0005
ASP 5800.0009
PHE 5810.0011
ALA 5820.0016
CYS 5830.0020
THR 5840.0025
CYS 5850.0030
GLU 5860.0027
HIS 5870.0021
GLN 5880.0024
SER 5890.0022
PHE 5900.0017
LEU 5910.0020
GLN 5920.0025
TRP 5930.0021
ILE 5940.0019
LYS 5950.0026
ASP 5960.0028
GLN 5970.0024
ARG 5980.0025
GLN 5990.0028
LEU 6000.0024
LEU 6010.0020
VAL 6020.0025
GLU 6030.0017
VAL 6040.0018
GLU 6050.0011
ARG 6060.0006
MET 6070.0010
GLU 6080.0011
CYS 6090.0014
ALA 6100.0014
THR 6110.0017
PRO 6120.0021
SER 6130.0024
ASP 6140.0027
LYS 6150.0023
GLN 6160.0019
GLY 6170.0015
MET 6180.0019
PRO 6190.0017
VAL 6200.0018
LEU 6210.0022
SER 6220.0026
LEU 6230.0027
ASN 6240.0034
ILE 6250.0035
THR 6260.0042
CYS 6270.0047
GLU 10.0021
ALA 20.0020
ALA 30.0023
ALA 40.0022
LYS 50.0018
MET 60.0020
GLN 70.0022
ARG 80.0019
LEU 90.0019
VAL 100.0022
LEU 110.0020
LEU 120.0019
LEU 130.0020
ALA 140.0021
ILE 150.0020
SER 160.0019
LEU 170.0018
LEU 180.0017
LEU 190.0018
TYR 200.0018
GLN 210.0014
ASP 220.0013
LEU 230.0015
PRO 240.0015
VAL 250.0016
ARG 260.0012
SER 270.0012
GLU 280.0014
PHE 290.0016
GLU 300.0014
LEU 310.0015
ASP 320.0016
ARG 330.0015
ILE 340.0016
CYS 350.0018
GLY 360.0022
TYR 370.0025
GLY 380.0018
THR 390.0015
ALA 400.0012
ARG 410.0013
CYS 420.0017
ARG 430.0016
LYS 440.0020
LYS 450.0018
CYS 460.0013
ARG 470.0012
SER 480.0011
GLN 490.0009
GLU 500.0010
TYR 510.0012
ARG 520.0016
ILE 530.0017
GLY 540.0023
ARG 550.0026
CYS 560.0024
PRO 570.0027
ASN 580.0026
THR 590.0029
TYR 600.0024
ALA 610.0019
CYS 620.0017
CYS 630.0014
LEU 640.0011
ARG 650.0009
LYS 660.0012
TRP 670.0013
ASP 680.0012
GLU 690.0011
SER 700.0012
LEU 710.0016
LEU 720.0017
ASN 730.0017
ARG 740.0018
THR 750.0020
LYS 760.0029
PRO 770.0030
GLU 780.0029
ALA 790.0033
ALA 800.0037
ALA 810.0129
LYS 820.0139
LYS 830.0156
GLU 840.0101
MET 850.0144
ASN 860.0085
LEU 870.0066
SER 880.0076
VAL 890.0067
GLY 900.0092
LEU 910.0092
GLY 920.0121
GLY 930.0146
GLY 940.0139
SER 950.0112
ASN 960.0093
LEU 970.0060
SER 980.0045
VAL 990.0023
GLY 1000.0048
LEU 1010.0098
GLY 1020.0328
GLU 1030.0543
ILE 1040.0775
GLY 1050.1023
GLY 1060.1268
GLY 1070.0957
SER 1080.0687
LYS 1090.0377
LEU 1100.0104
LEU 1110.0072
ASP 1120.0065
ILE 1130.0080
ASN 1140.0081
LEU 1150.0093
GLY 1160.0071
ARG 1170.0122
GLY 1180.0074
GLY 1190.0102
GLY 1200.0113
SER 1210.0094
MET 1220.0099
VAL 1230.0088
ASP 1240.0091
LEU 1250.0083
THR 1260.0089
PHE 1270.0091
GLY 1280.0089
GLY 1290.0090
VAL 1300.0097
GLY 1310.0190
GLY 1320.0267
GLY 1330.0297
SER 1340.0291
THR 1350.0291
PHE 1360.0234
THR 1370.0229
PHE 1380.0176
PHE 1390.0174
PRO 1400.0124
LEU 1410.0150
VAL 1420.0124
ILE 1430.0161
GLY 1440.0184
GLY 1450.0211
GLY 1460.0222
SER 1470.0213
ASP 1480.0182
ALA 1490.0194
MET 1500.0174
TYR 1510.0192
LEU 1520.0190
GLY 1530.0221
PHE 1540.0237
ALA 1550.0275
ALA 1560.0355
GLY 1570.0386
GLY 1580.0421
GLY 1590.0398
SER 1600.0363
ALA 1610.0320
GLY 1620.0247
GLY 1630.0194
GLU 1640.0127
ASN 1650.0131
HIS 1660.0095
VAL 1670.0095
ALA 1680.0089
PHE 1690.0085
GLY 1700.0090
PRO 1710.0139
GLY 1720.0108
PRO 1730.0102
GLY 1740.0081
VAL 1750.0092
ASP 1760.0083
LEU 1770.0116
THR 1780.0136
PHE 1790.0174
GLY 1800.0200
GLY 1810.0199
VAL 1820.0180
GLN 1830.0129
PHE 1840.0106
ALA 1850.0061
MET 1860.0050
VAL 1870.0160
ASN 1880.0257
ASN 1890.0384
GLY 1900.0476
PRO 1910.0601
GLY 1920.0893
PRO 1930.0812
GLY 1940.0363
GLU 1950.0089
SER 1960.0714
PHE 1970.0627
THR 1980.0352
ALA 1990.0392
GLN 2000.0239
PRO 2010.0372
ALA 2020.0364
ASP 2030.0263
MET 2040.0177
GLN 2050.0325
ALA 2060.0271
GLY 2070.0369
ILE 2080.0226
LYS 2090.0253
GLY 2100.0263
PRO 2110.0135
GLY 2120.0361
PRO 2130.0508
GLY 2140.0315
GLY 2150.0168
SER 2160.0264
ILE 2170.0310
GLN 2180.0300
VAL 2190.0230
ILE 2200.0329
ASN 2210.0274
GLY 2220.0262
SER 2230.0288
THR 2240.0245
ILE 2250.0233
GLY 2260.0245
THR 2270.0213
GLY 2280.0172
SER 2290.0133
LYS 2300.0139
LYS 2310.0160
THR 2320.0182
ILE 2330.0160
LEU 2340.0182
ILE 2350.0170
TYR 2360.0133
SER 2370.0130
ILE 2380.0100
ILE 2390.0094
GLY 2400.0076
VAL 2410.0036
LYS 2420.0023
LYS 2430.0017
GLY 2440.0010
THR 2450.0018
LEU 2460.0049
ALA 2470.0084
TRP 2480.0124
ALA 2490.0154
ARG 2500.0194
THR 2510.0217
GLY 2520.0210
PHE 2530.0191
SER 2540.0189
PRO 2550.0166
ALA 2560.0175
LYS 2570.0147
LYS 2580.0105
LEU 2590.0140
ASN 2600.0144
ALA 2610.0165
GLY 2620.0115
VAL 2630.0147
VAL 2640.0089
ARG 2650.0140
VAL 2660.0071
PHE 2670.0066
PHE 2680.0043
LEU 2690.0037
ASN 2700.0057
GLN 2710.0020
LYS 2720.0012
LYS 2730.0024
ALA 2740.0021
LYS 2750.0013
ASP 2760.0028
VAL 2770.0042
LEU 2780.0038
ARG 2790.0038
LYS 2800.0057
THR 2810.0114
SER 2820.0171
ARG 2830.0168
PRO 2840.0229
MET 2850.0256
VAL 2860.0261
ASP 2870.0198
LEU 2880.0191
THR 2890.0133
PHE 2900.0144
GLY 2910.0098
GLY 2920.0186

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.